Wall clock time and date at job start Tue Mar 31 2020 15:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99667 * 2 1 4 4 H 1.48500 * 109.47014 * 269.99757 * 3 2 1 5 5 H 1.48494 * 109.47223 * 29.99633 * 3 2 1 6 6 H 1.48500 * 109.46841 * 149.99956 * 3 2 1 7 7 C 1.37872 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00279 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.52077 * 60.07913 * 9 7 2 11 11 C 1.53044 * 109.49764 * 180.16116 * 9 7 2 12 12 C 1.53042 * 109.53303 * 181.31561 * 11 9 7 13 13 C 1.53622 * 109.24364 * 298.50830 * 12 11 9 14 14 N 1.46925 * 108.54229 * 54.85792 * 13 12 11 15 15 C 1.34781 * 120.62902 * 126.36594 * 14 13 12 16 16 O 1.21566 * 119.99867 * 179.72284 * 15 14 13 17 17 C 1.47692 * 119.99913 * 359.72415 * 15 14 13 18 18 C 1.39738 * 120.16526 * 269.99741 * 17 15 14 19 19 Cl 1.73604 * 120.08960 * 0.04599 * 18 17 15 20 20 C 1.38103 * 119.82874 * 180.02562 * 18 17 15 21 21 C 1.38327 * 120.16719 * 0.27766 * 20 18 17 22 22 C 1.38337 * 120.33621 * 359.44640 * 21 20 18 23 23 C 1.38091 * 120.17032 * 0.55148 * 22 21 20 24 24 Cl 1.73596 * 120.08610 * 179.70453 * 23 22 21 25 25 C 1.46923 * 118.74124 * 306.09549 * 14 13 12 26 26 H 0.97003 * 120.00090 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.45837 * 301.33345 * 11 9 7 28 28 H 1.09000 * 109.45865 * 61.29470 * 11 9 7 29 29 H 1.09003 * 109.50003 * 58.58775 * 12 11 9 30 30 H 1.09000 * 109.48994 * 178.64864 * 12 11 9 31 31 H 1.09000 * 109.73903 * 295.12584 * 13 12 11 32 32 H 1.08999 * 109.66460 * 174.55409 * 13 12 11 33 33 H 1.08002 * 119.91402 * 179.97438 * 20 18 17 34 34 H 1.07994 * 119.83239 * 179.69948 * 21 20 18 35 35 H 1.08003 * 119.91090 * 180.25822 * 22 21 20 36 36 H 1.08997 * 109.58978 * 173.64791 * 25 14 13 37 37 H 1.09001 * 109.58711 * 294.07091 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8755 -0.6813 0.8915 11 6 4.0224 -2.6366 -0.0024 12 6 5.5525 -2.6378 0.0313 13 6 6.0871 -1.9329 -1.2246 14 7 5.4866 -0.5941 -1.3003 15 6 6.2632 0.5011 -1.4197 16 8 5.7540 1.6029 -1.4864 17 6 7.7327 0.3624 -1.4694 18 6 8.4812 0.3924 -0.2898 19 17 7.6861 0.5918 1.2406 20 6 9.8550 0.2627 -0.3444 21 6 10.4908 0.1091 -1.5632 22 6 9.7562 0.0728 -2.7348 23 6 8.3818 0.2012 -2.6964 24 17 7.4627 0.1629 -4.1687 25 6 4.0234 -0.4722 -1.2495 26 1 -0.4850 0.8401 -0.0004 27 1 3.6395 -3.1595 0.8739 28 1 3.6787 -3.1413 -0.9053 29 1 5.8972 -2.1115 0.9215 30 1 5.9150 -3.6655 0.0530 31 1 5.8162 -2.5055 -2.1116 32 1 7.1717 -1.8439 -1.1617 33 1 10.4349 0.2861 0.5665 34 1 11.5659 0.0130 -1.6001 35 1 10.2593 -0.0516 -3.6824 36 1 3.7457 0.5808 -1.2030 37 1 3.5876 -0.9281 -2.1385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397654432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:30 Heat of formation + Delta-G solvation = -41.797205 kcal Electronic energy + Delta-G solvation = -24033.793484 eV Core-core repulsion = 20440.756765 eV Total energy + Delta-G solvation = -3593.036719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72133 -39.96308 -38.48877 -37.92848 -37.41196 -35.38924 -33.79728 -32.62134 -31.95219 -31.81863 -27.21273 -26.82382 -24.46458 -23.92694 -23.62074 -21.63775 -20.36373 -19.08102 -18.78453 -18.03918 -17.38193 -17.35094 -16.47832 -15.97015 -15.64694 -15.54952 -15.46463 -15.16183 -14.94852 -14.87049 -14.49719 -14.04319 -13.79296 -13.51398 -13.46049 -13.23691 -12.98928 -12.79345 -12.38155 -12.28608 -12.25496 -12.16193 -12.11207 -11.86323 -11.63810 -11.38090 -11.09228 -10.99649 -10.83644 -10.09912 -9.91255 -9.69463 -8.42471 -6.43224 -0.31930 -0.16458 0.66662 1.08838 1.17541 1.24335 1.32175 1.37871 1.86998 2.17073 2.27524 2.94734 3.18549 3.66991 3.83681 3.88357 4.03153 4.06999 4.08863 4.23845 4.26936 4.37995 4.45466 4.56266 4.65253 4.80453 4.84132 4.93666 4.97496 5.08147 5.08872 5.17540 5.32083 5.47126 5.49248 5.59297 5.65424 6.23275 6.29778 6.65430 6.93451 7.22353 8.73580 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015663 B = 0.005194 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.185728 B = 5389.839826 C = 5678.146056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.034 3.966 3 Si 0.928 3.072 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.007 3.993 10 H 0.013 0.987 11 C -0.096 4.096 12 C -0.125 4.125 13 C 0.107 3.893 14 N -0.592 5.592 15 C 0.554 3.446 16 O -0.580 6.580 17 C -0.126 4.126 18 C -0.018 4.018 19 Cl -0.064 7.064 20 C -0.096 4.096 21 C -0.058 4.058 22 C -0.094 4.094 23 C -0.015 4.015 24 Cl -0.060 7.060 25 C 0.110 3.890 26 H 0.267 0.733 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.175 0.825 34 H 0.197 0.803 35 H 0.178 0.822 36 H 0.048 0.952 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.111 -4.896 -4.282 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.164 4.164 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.073 0.927 9 C -0.013 4.013 10 H 0.031 0.969 11 C -0.134 4.134 12 C -0.163 4.163 13 C -0.014 4.014 14 N -0.322 5.322 15 C 0.342 3.658 16 O -0.461 6.461 17 C -0.130 4.130 18 C -0.045 4.045 19 Cl -0.035 7.035 20 C -0.114 4.114 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.042 4.042 24 Cl -0.031 7.031 25 C -0.012 4.012 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.193 0.807 34 H 0.214 0.786 35 H 0.195 0.805 36 H 0.066 0.934 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.502 -4.230 -4.307 29.134 hybrid contribution -1.136 1.375 0.058 1.785 sum 27.366 -2.854 -4.249 27.840 Atomic orbital electron populations 1.69969 1.07319 1.27771 1.52435 1.25522 0.95080 1.01213 0.94628 0.86223 0.78417 0.81382 0.78193 1.21043 1.21971 1.19433 1.21300 0.90714 0.93265 1.49329 0.92664 1.19400 0.93945 0.95523 0.92385 0.96928 1.21369 0.94946 0.95179 1.01873 1.21999 0.95293 1.01991 0.96970 1.22091 0.98329 0.81179 0.99849 1.48334 1.06746 1.07415 1.69751 1.18567 0.87152 0.84117 0.75995 1.90772 1.75559 1.27448 1.52295 1.19544 0.92498 1.07371 0.93620 1.21089 0.94169 1.04033 0.85231 1.98436 1.80813 1.95546 1.28743 1.21571 0.89856 0.98063 1.01903 1.21797 1.02758 0.94050 0.88978 1.21580 0.89213 0.98087 1.02393 1.21039 0.93701 1.03979 0.85501 1.98418 1.74584 1.96640 1.33440 1.22183 0.78010 1.00344 1.00671 0.92347 0.92194 0.91898 0.92447 0.87256 0.89456 0.88658 0.80747 0.78561 0.80498 0.93429 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.57 13.96 21.45 0.30 -59.28 16 2 C 0.03 2.09 5.45 84.65 0.46 2.55 16 3 Si 0.93 51.52 24.32 68.60 1.67 53.19 16 4 H -0.28 -16.07 6.92 99.48 0.69 -15.38 16 5 H -0.29 -15.84 7.11 99.48 0.71 -15.13 16 6 H -0.27 -15.07 6.53 99.48 0.65 -14.42 16 7 C -0.51 -29.11 9.15 25.60 0.23 -28.88 16 8 H 0.06 3.37 7.99 -2.91 -0.02 3.35 16 9 C 0.01 0.34 1.84 -11.46 -0.02 0.32 16 10 H 0.01 0.65 7.21 -2.39 -0.02 0.63 16 11 C -0.10 -3.51 5.10 30.62 0.16 -3.35 16 12 C -0.12 -3.42 6.10 30.82 0.19 -3.23 16 13 C 0.11 2.94 6.37 86.51 0.55 3.49 16 14 N -0.59 -22.57 2.97 -821.66 -2.44 -25.01 16 15 C 0.55 21.81 5.25 86.74 0.46 22.26 16 16 O -0.58 -28.72 16.52 -3.92 -0.06 -28.79 16 17 C -0.13 -3.62 3.63 -20.05 -0.07 -3.69 16 18 C -0.02 -0.42 6.22 22.60 0.14 -0.28 16 19 Cl -0.06 -1.86 28.04 -2.72 -0.08 -1.93 16 20 C -0.10 -1.26 9.82 22.26 0.22 -1.04 16 21 C -0.06 -0.45 10.04 22.31 0.22 -0.23 16 22 C -0.09 -1.16 9.82 22.26 0.22 -0.94 16 23 C -0.01 -0.33 6.35 22.60 0.14 -0.19 16 24 Cl -0.06 -1.53 28.04 -2.72 -0.08 -1.61 16 25 C 0.11 5.13 5.10 86.36 0.44 5.57 16 26 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.17 6.23 -2.39 -0.01 2.16 16 33 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.20 -0.31 8.06 -2.91 -0.02 -0.33 16 35 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.05 2.55 2.32 -2.39 -0.01 2.54 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -80.30 329.69 3.68 -76.62 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: 1.03 Total: -5.56 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 3.34 Total: -7.63 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.14 Total: -84.29 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.06 Total: -28.79 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 1.67 Total: 53.19 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.15 Total: -3.54 kcal Total: -80.30 3.68 -76.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397654432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.821 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds