Wall clock time and date at job start Tue Mar 31 2020 15:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99946 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00329 * 3 2 1 5 5 H 1.48504 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47232 * 119.99994 * 3 2 1 7 7 C 1.37871 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00246 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49785 * 300.06263 * 9 7 2 11 11 C 1.53048 * 109.49545 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53525 * 178.68117 * 11 9 7 13 13 C 1.53196 * 109.31120 * 61.36810 * 12 11 9 14 14 N 1.46924 * 108.77420 * 305.36220 * 13 12 11 15 15 C 1.34777 * 120.63257 * 233.58351 * 14 13 12 16 16 O 1.21562 * 120.00517 * 184.19045 * 15 14 13 17 17 C 1.47771 * 119.99774 * 4.19807 * 15 14 13 18 18 C 1.39635 * 120.15010 * 305.40188 * 17 15 14 19 19 C 1.37892 * 119.89629 * 180.30084 * 18 17 15 20 20 C 1.38415 * 120.19539 * 359.70039 * 19 18 17 21 21 C 1.38374 * 120.29756 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.94156 * 179.97438 * 21 20 19 23 23 C 1.38272 * 120.10733 * 359.97438 * 21 20 19 24 24 Cl 1.73596 * 120.09676 * 179.97438 * 23 21 20 25 25 C 1.46935 * 118.74052 * 53.86037 * 14 13 12 26 26 H 0.97003 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45891 * 58.66486 * 11 9 7 28 28 H 1.08992 * 109.44655 * 298.69470 * 11 9 7 29 29 H 1.09001 * 109.50110 * 301.41863 * 12 11 9 30 30 H 1.09004 * 109.49679 * 181.31621 * 12 11 9 31 31 H 1.09001 * 109.58702 * 185.57829 * 13 12 11 32 32 H 1.09002 * 109.70622 * 65.21752 * 13 12 11 33 33 H 1.08005 * 120.05250 * 359.97438 * 18 17 15 34 34 H 1.08001 * 119.91019 * 179.67969 * 19 18 17 35 35 H 1.07995 * 119.84855 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.58128 * 65.92657 * 25 14 13 37 37 H 1.08999 * 109.58661 * 186.34966 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8890 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9885 0.0327 13 6 0.6057 -5.1003 -1.2197 14 7 -0.2528 -3.9110 -1.3042 15 6 -1.5892 -4.0360 -1.4268 16 8 -2.2814 -3.0474 -1.5723 17 6 -2.2129 -5.3749 -1.3841 18 6 -1.7819 -6.3776 -2.2551 19 6 -2.3719 -7.6233 -2.2150 20 6 -3.3858 -7.8845 -1.3096 21 6 -3.8153 -6.8986 -0.4389 22 17 -5.0881 -7.2362 0.6924 23 6 -3.2324 -5.6451 -0.4684 24 17 -3.7719 -4.4082 0.6237 25 6 0.3737 -2.5827 -1.2588 26 1 -0.4850 0.8401 -0.0004 27 1 2.8873 -3.5918 0.8773 28 1 2.8559 -3.6183 -0.9021 29 1 0.8507 -5.0231 0.9213 30 1 2.1897 -5.8164 0.0562 31 1 -0.0142 -5.9944 -1.1536 32 1 1.2377 -5.1584 -2.1058 33 1 -0.9913 -6.1761 -2.9628 34 1 -2.0422 -8.3973 -2.8921 35 1 -3.8436 -8.8622 -1.2828 36 1 0.9890 -2.4384 -2.1469 37 1 -0.3993 -1.8153 -1.2186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397676952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:04 Heat of formation + Delta-G solvation = -24.524050 kcal Electronic energy + Delta-G solvation = -23513.583376 eV Core-core repulsion = 19921.295677 eV Total energy + Delta-G solvation = -3592.287699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30778 -38.59734 -36.79156 -36.58526 -36.36367 -33.47511 -31.96596 -31.21232 -30.86562 -29.66150 -25.43030 -25.07247 -23.17731 -22.95380 -21.81609 -20.15302 -18.76234 -17.42514 -16.77720 -16.21745 -16.16275 -15.55645 -14.96476 -14.63932 -14.43341 -14.18422 -13.91111 -13.71506 -13.42869 -12.86044 -12.63331 -12.30086 -12.25449 -11.95003 -11.89979 -11.83369 -11.53633 -11.26239 -10.99568 -10.90008 -10.75083 -10.54281 -10.42170 -10.25014 -9.92309 -9.47899 -9.18326 -9.02601 -8.93977 -8.85304 -8.44238 -7.81031 -6.00250 -4.09302 0.65186 0.75186 1.71444 2.16199 2.94420 3.28470 3.33631 3.38200 3.39175 3.64741 4.40641 4.44495 4.58538 4.76516 4.87028 5.07037 5.24347 5.28719 5.31032 5.45623 5.61397 5.66989 5.80782 5.92723 5.95214 6.14008 6.26168 6.28108 6.57173 6.63629 6.81798 6.94400 7.10060 7.20287 7.60640 7.84423 7.96614 8.15805 8.36396 8.71818 8.94533 9.56486 11.05101 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.003892 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.898260 B = 7191.622559 C = 7933.353013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.100 3.900 14 N -0.594 5.594 15 C 0.547 3.453 16 O -0.512 6.512 17 C -0.093 4.093 18 C -0.079 4.079 19 C -0.110 4.110 20 C -0.090 4.090 21 C -0.037 4.037 22 Cl -0.049 7.049 23 C 0.004 3.996 24 Cl -0.020 7.020 25 C 0.114 3.886 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.045 0.955 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 -18.858 -3.389 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.023 4.023 14 N -0.327 5.327 15 C 0.332 3.668 16 O -0.387 6.387 17 C -0.098 4.098 18 C -0.098 4.098 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.065 4.065 22 Cl -0.020 7.020 23 C -0.025 4.025 24 Cl 0.010 6.990 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.063 0.937 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.757 -18.067 -3.259 19.240 hybrid contribution 0.360 0.859 0.224 0.958 sum -5.397 -17.208 -3.035 18.289 Atomic orbital electron populations 1.69877 1.05728 1.27013 1.49061 1.25046 0.94870 0.99231 0.94780 0.86658 0.79581 0.83196 0.78571 1.20244 1.21253 1.20285 1.21028 0.92863 0.90093 1.52141 0.92396 1.19042 0.92609 0.92308 0.93870 0.95195 1.21633 0.98555 0.94018 1.00629 1.21944 0.98599 0.99180 0.97456 1.21883 0.93582 0.88102 0.98760 1.48457 1.04686 1.09355 1.70164 1.17949 0.82895 0.87279 0.78718 1.90849 1.61630 1.37862 1.48387 1.20125 0.96528 0.96344 0.96765 1.21433 0.98942 0.91834 0.97576 1.21125 0.95871 0.97164 0.98674 1.21137 0.97064 0.98541 0.94156 1.20677 0.95244 0.93731 0.96856 1.98389 1.49001 1.95046 1.59571 1.20817 0.96460 0.90008 0.95217 1.98451 1.88507 1.51553 1.60517 1.22459 0.98665 0.80729 0.98719 0.92545 0.92949 0.93132 0.92108 0.92147 0.90774 0.91704 0.83879 0.83935 0.83878 0.93677 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 11.41 55.43 0.63 -24.88 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.98 8.56 -34.44 -0.29 -14.27 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.99 2.26 -91.43 -0.21 0.79 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.14 5.10 -26.68 -0.14 -2.28 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.10 1.50 5.54 -3.71 -0.02 1.48 16 14 N -0.59 -11.63 2.97 -173.64 -0.52 -12.15 16 15 C 0.55 10.94 6.60 -12.36 -0.08 10.86 16 16 O -0.51 -12.40 15.63 5.31 0.08 -12.32 16 17 C -0.09 -1.46 4.87 -104.94 -0.51 -1.97 16 18 C -0.08 -0.89 7.43 -39.19 -0.29 -1.18 16 19 C -0.11 -0.94 10.03 -39.64 -0.40 -1.34 16 20 C -0.09 -0.83 9.82 -39.47 -0.39 -1.22 16 21 C -0.04 -0.46 6.32 -39.52 -0.25 -0.71 16 22 Cl -0.05 -0.57 27.95 -51.86 -1.45 -2.02 16 23 C 0.00 0.06 6.35 -39.04 -0.25 -0.19 16 24 Cl -0.02 -0.35 26.40 -51.86 -1.37 -1.72 16 25 C 0.11 2.70 5.42 -3.48 -0.02 2.68 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.93 4.75 -51.93 -0.25 0.68 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.14 1.38 7.40 -52.48 -0.39 0.99 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.12 3.44 5.17 -51.93 -0.27 3.17 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -31.17 331.40 -10.00 -41.16 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.25 Total: -1.22 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.10 Total: -7.97 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.12 Total: -37.03 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -2.82 Total: -3.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.17 -10.00 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397676952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.636 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds