Wall clock time and date at job start Tue Mar 31 2020 15:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99946 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00329 * 3 2 1 5 5 H 1.48504 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47232 * 119.99994 * 3 2 1 7 7 C 1.37871 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00246 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49785 * 300.06263 * 9 7 2 11 11 C 1.53048 * 109.49545 * 180.02562 * 9 7 2 12 12 C 1.53041 * 109.53525 * 178.68117 * 11 9 7 13 13 C 1.53196 * 109.31120 * 61.36810 * 12 11 9 14 14 N 1.46924 * 108.77420 * 305.36220 * 13 12 11 15 15 C 1.34777 * 120.63257 * 233.58351 * 14 13 12 16 16 O 1.21562 * 120.00517 * 184.19045 * 15 14 13 17 17 C 1.47771 * 119.99774 * 4.19807 * 15 14 13 18 18 C 1.39635 * 120.15010 * 305.40188 * 17 15 14 19 19 C 1.37892 * 119.89629 * 180.30084 * 18 17 15 20 20 C 1.38415 * 120.19539 * 359.70039 * 19 18 17 21 21 C 1.38374 * 120.29756 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.94156 * 179.97438 * 21 20 19 23 23 C 1.38272 * 120.10733 * 359.97438 * 21 20 19 24 24 Cl 1.73596 * 120.09676 * 179.97438 * 23 21 20 25 25 C 1.46935 * 118.74052 * 53.86037 * 14 13 12 26 26 H 0.97003 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45891 * 58.66486 * 11 9 7 28 28 H 1.08992 * 109.44655 * 298.69470 * 11 9 7 29 29 H 1.09001 * 109.50110 * 301.41863 * 12 11 9 30 30 H 1.09004 * 109.49679 * 181.31621 * 12 11 9 31 31 H 1.09001 * 109.58702 * 185.57829 * 13 12 11 32 32 H 1.09002 * 109.70622 * 65.21752 * 13 12 11 33 33 H 1.08005 * 120.05250 * 359.97438 * 18 17 15 34 34 H 1.08001 * 119.91019 * 179.67969 * 19 18 17 35 35 H 1.07995 * 119.84855 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.58128 * 65.92657 * 25 14 13 37 37 H 1.08999 * 109.58661 * 186.34966 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8890 11 6 2.2450 -3.6629 -0.0005 12 6 1.4810 -4.9885 0.0327 13 6 0.6057 -5.1003 -1.2197 14 7 -0.2528 -3.9110 -1.3042 15 6 -1.5892 -4.0360 -1.4268 16 8 -2.2814 -3.0474 -1.5723 17 6 -2.2129 -5.3749 -1.3841 18 6 -1.7819 -6.3776 -2.2551 19 6 -2.3719 -7.6233 -2.2150 20 6 -3.3858 -7.8845 -1.3096 21 6 -3.8153 -6.8986 -0.4389 22 17 -5.0881 -7.2362 0.6924 23 6 -3.2324 -5.6451 -0.4684 24 17 -3.7719 -4.4082 0.6237 25 6 0.3737 -2.5827 -1.2588 26 1 -0.4850 0.8401 -0.0004 27 1 2.8873 -3.5918 0.8773 28 1 2.8559 -3.6183 -0.9021 29 1 0.8507 -5.0231 0.9213 30 1 2.1897 -5.8164 0.0562 31 1 -0.0142 -5.9944 -1.1536 32 1 1.2377 -5.1584 -2.1058 33 1 -0.9913 -6.1761 -2.9628 34 1 -2.0422 -8.3973 -2.8921 35 1 -3.8436 -8.8622 -1.2828 36 1 0.9890 -2.4384 -2.1469 37 1 -0.3993 -1.8153 -1.2186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397676952.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:03 Heat of formation + Delta-G solvation = -42.811076 kcal Electronic energy + Delta-G solvation = -23514.376361 eV Core-core repulsion = 19921.295677 eV Total energy + Delta-G solvation = -3593.080684 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57348 -39.81299 -38.30473 -37.59209 -37.55215 -35.32769 -33.59298 -32.38477 -31.80400 -31.29836 -27.18861 -26.64249 -24.38621 -23.96037 -23.33597 -21.63702 -20.22913 -18.84506 -18.14962 -17.78267 -17.32805 -16.88708 -16.54072 -16.10108 -15.67749 -15.33895 -15.14752 -14.99205 -14.90188 -14.52252 -14.30056 -13.80340 -13.50887 -13.22900 -12.96877 -12.92962 -12.85191 -12.77822 -12.46755 -12.29789 -12.24350 -12.22219 -11.90384 -11.79637 -11.63331 -11.17190 -10.96008 -10.73433 -10.52199 -10.03887 -9.82212 -9.43854 -8.11008 -6.28402 -0.30444 -0.15091 0.72312 1.12816 1.40571 1.41833 1.50319 1.64615 2.08809 2.40420 2.43022 3.16868 3.32851 3.76923 3.81233 4.04515 4.08652 4.17154 4.20019 4.27787 4.43504 4.58769 4.73470 4.78081 4.82378 4.87270 5.01670 5.08838 5.12545 5.24559 5.26514 5.35169 5.51697 5.53890 5.62017 5.89381 5.98667 6.31862 6.57629 6.84385 7.20622 7.42164 8.92175 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.003892 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.898260 B = 7191.622559 C = 7933.353013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.039 3.961 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.096 3.904 14 N -0.598 5.598 15 C 0.541 3.459 16 O -0.572 6.572 17 C -0.119 4.119 18 C -0.074 4.074 19 C -0.081 4.081 20 C -0.072 4.072 21 C -0.045 4.045 22 Cl -0.048 7.048 23 C -0.021 4.021 24 Cl -0.062 7.062 25 C 0.128 3.872 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.197 0.803 35 H 0.183 0.817 36 H 0.044 0.956 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -23.111 -5.125 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.020 3.980 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.026 4.026 14 N -0.329 5.329 15 C 0.329 3.671 16 O -0.452 6.452 17 C -0.123 4.123 18 C -0.092 4.092 19 C -0.099 4.099 20 C -0.090 4.090 21 C -0.073 4.073 22 Cl -0.019 7.019 23 C -0.049 4.049 24 Cl -0.033 7.033 25 C 0.006 3.994 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.183 0.817 34 H 0.214 0.786 35 H 0.200 0.800 36 H 0.062 0.938 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.079 -22.375 -4.990 23.285 hybrid contribution -0.164 2.046 0.737 2.181 sum -4.243 -20.329 -4.254 21.198 Atomic orbital electron populations 1.70098 1.07494 1.27270 1.50566 1.25893 0.95487 1.02929 0.94579 0.85632 0.78264 0.78762 0.79158 1.18942 1.21694 1.19369 1.21494 0.93330 0.91430 1.51203 0.91802 1.18971 0.93079 0.93943 0.92037 1.00019 1.21518 0.97601 0.93988 1.01127 1.21918 0.98970 0.98435 0.97202 1.22266 0.93638 0.87128 0.99520 1.48449 1.05414 1.09255 1.69809 1.18679 0.82607 0.88725 0.77092 1.90802 1.62905 1.40561 1.50907 1.19806 0.97942 0.95003 0.99583 1.21754 0.99378 0.91691 0.96386 1.21695 0.93720 0.96693 0.97801 1.21708 0.96202 0.98979 0.92116 1.20885 0.95381 0.93255 0.97759 1.98391 1.48926 1.94832 1.59788 1.20988 0.97841 0.90394 0.95692 1.98429 1.89050 1.53732 1.62081 1.21828 0.97090 0.82333 0.98168 0.93231 0.93116 0.91868 0.93922 0.87431 0.87547 0.88784 0.81721 0.78624 0.79990 0.93784 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.66 11.41 21.45 0.24 -56.42 16 2 C 0.01 0.60 5.30 84.65 0.45 1.05 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.61 8.56 25.60 0.22 -29.39 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 1.97 2.26 -11.32 -0.03 1.95 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.10 -3.98 5.10 30.62 0.16 -3.82 16 12 C -0.13 -3.71 6.08 30.67 0.19 -3.52 16 13 C 0.10 2.60 5.54 86.36 0.48 3.07 16 14 N -0.60 -23.79 2.97 -821.54 -2.44 -26.23 16 15 C 0.54 22.49 6.60 86.76 0.57 23.07 16 16 O -0.57 -29.97 15.63 -3.91 -0.06 -30.04 16 17 C -0.12 -3.62 4.87 -20.07 -0.10 -3.72 16 18 C -0.07 -1.35 7.43 22.53 0.17 -1.18 16 19 C -0.08 -0.86 10.03 22.23 0.22 -0.64 16 20 C -0.07 -0.95 9.82 22.34 0.22 -0.73 16 21 C -0.05 -1.02 6.32 22.31 0.14 -0.88 16 22 Cl -0.05 -1.06 27.95 -2.72 -0.08 -1.14 16 23 C -0.02 -0.64 6.35 22.62 0.14 -0.49 16 24 Cl -0.06 -2.34 26.40 -2.72 -0.07 -2.41 16 25 C 0.13 6.36 5.42 86.50 0.47 6.83 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 2.23 4.75 -2.39 -0.01 2.22 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.17 2.31 7.40 -2.91 -0.02 2.28 16 34 H 0.20 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 4.51 5.17 -2.39 -0.01 4.49 16 Total: -1.00 -78.32 331.40 4.03 -74.29 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.10 Total: 3.68 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 3.30 Total: -8.39 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.19 Total: -82.64 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.06 Total: -30.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.15 Total: -3.55 kcal Total: -78.32 4.03 -74.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397676952.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.477 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds