Wall clock time and date at job start Tue Mar 31 2020 15:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99800 * 2 1 4 4 H 1.48502 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47123 * 299.99812 * 3 2 1 6 6 H 1.48500 * 109.47419 * 59.99856 * 3 2 1 7 7 C 1.37872 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99806 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50181 * 59.93542 * 9 7 2 11 11 C 1.53050 * 109.49452 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53543 * 181.34761 * 11 9 7 13 13 C 1.53193 * 109.31295 * 298.63599 * 12 11 9 14 14 N 1.46927 * 108.77823 * 54.63362 * 13 12 11 15 15 C 1.34775 * 120.62696 * 126.40927 * 14 13 12 16 16 O 1.21557 * 119.99466 * 176.18767 * 15 14 13 17 17 C 1.47850 * 120.00352 * 356.19222 * 15 14 13 18 18 C 1.39562 * 120.13053 * 230.49013 * 17 15 14 19 19 C 1.38083 * 119.86628 * 179.76726 * 18 17 15 20 20 Cl 1.73603 * 119.93856 * 180.23334 * 19 18 17 21 21 C 1.38454 * 120.12994 * 0.53251 * 19 18 17 22 22 C 1.38448 * 120.26788 * 359.69876 * 21 19 18 23 23 Cl 1.73595 * 119.93704 * 180.02562 * 22 21 19 24 24 C 1.38093 * 120.13113 * 0.04636 * 22 21 19 25 25 C 1.46924 * 118.73812 * 306.39493 * 14 13 12 26 26 H 0.96995 * 120.00113 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.45755 * 61.32611 * 11 9 7 28 28 H 1.09001 * 109.44951 * 301.36117 * 11 9 7 29 29 H 1.09006 * 109.49601 * 58.58736 * 12 11 9 30 30 H 1.08995 * 109.49486 * 178.68333 * 12 11 9 31 31 H 1.09005 * 109.58443 * 174.42640 * 13 12 11 32 32 H 1.09004 * 109.58579 * 294.85020 * 13 12 11 33 33 H 1.07999 * 120.06805 * 0.02562 * 18 17 15 34 34 H 1.08003 * 119.86731 * 179.72133 * 21 19 18 35 35 H 1.07996 * 120.06308 * 179.97438 * 24 22 21 36 36 H 1.08999 * 109.58726 * 293.81634 * 25 14 13 37 37 H 1.09002 * 109.70169 * 173.46058 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5570 -0.8889 11 6 2.2451 -3.6628 0.0005 12 6 1.4811 -4.9885 -0.0334 13 6 0.6053 -5.1007 1.2185 14 7 -0.2533 -3.9114 1.3031 15 6 -1.5897 -4.0366 1.4249 16 8 -2.2826 -3.0476 1.5637 17 6 -2.2129 -5.3769 1.3899 18 6 -3.2911 -5.6261 0.5395 19 6 -3.8659 -6.8812 0.5076 20 17 -5.2032 -7.1950 -0.5539 21 6 -3.3818 -7.8883 1.3252 22 6 -2.3156 -7.6458 2.1744 23 17 -1.7152 -8.9149 3.1954 24 6 -1.7291 -6.3961 2.2113 25 6 0.3727 -2.5832 1.2528 26 1 -0.4850 0.8400 -0.0004 27 1 2.8559 -3.6186 0.9022 28 1 2.8876 -3.5914 -0.8771 29 1 0.8512 -5.0227 -0.9224 30 1 2.1898 -5.8163 -0.0570 31 1 -0.0145 -5.9949 1.1518 32 1 1.2388 -5.1577 2.1037 33 1 -3.6724 -4.8401 -0.0955 34 1 -3.8376 -8.8672 1.3001 35 1 -0.8978 -6.2080 2.8745 36 1 0.9872 -2.4349 2.1408 37 1 -0.3991 -1.8146 1.2100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397701454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:13 Heat of formation + Delta-G solvation = -43.255271 kcal Electronic energy + Delta-G solvation = -23150.745873 eV Core-core repulsion = 19557.645927 eV Total energy + Delta-G solvation = -3593.099945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68665 -39.92529 -38.39362 -37.85825 -37.31165 -35.37039 -33.63642 -32.47980 -31.95327 -31.32991 -27.23772 -26.72716 -24.46057 -24.08668 -23.36476 -21.67919 -20.28785 -18.89468 -18.17359 -17.84809 -17.29208 -16.88428 -16.54337 -16.27880 -15.85622 -15.47099 -15.26365 -14.97261 -14.90309 -14.53412 -14.32949 -13.84548 -13.55735 -13.42043 -13.35995 -13.01918 -12.91153 -12.70774 -12.32732 -12.30345 -12.25041 -12.16331 -12.02886 -11.79727 -11.65728 -11.22865 -10.97620 -10.78091 -10.53772 -10.14334 -9.89812 -9.50088 -8.12033 -6.28587 -0.41864 -0.24305 0.64474 1.06887 1.39847 1.42217 1.53650 1.57177 1.98845 2.31112 2.42276 3.16102 3.25779 3.70937 3.73361 3.82692 4.01717 4.07223 4.13203 4.15474 4.34013 4.56499 4.71679 4.73306 4.77426 4.80504 4.83785 4.92990 5.08563 5.17273 5.23076 5.26030 5.34718 5.50726 5.60357 5.88469 5.97709 6.31455 6.51496 6.84176 7.11950 7.42047 8.91870 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.003428 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.014456 B = 8165.096554 C = 9090.485796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.013 1.013 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.093 3.907 14 N -0.596 5.596 15 C 0.543 3.457 16 O -0.581 6.581 17 C -0.100 4.100 18 C -0.070 4.070 19 C -0.025 4.025 20 Cl -0.044 7.044 21 C -0.073 4.073 22 C -0.023 4.023 23 Cl -0.034 7.034 24 C -0.073 4.073 25 C 0.125 3.875 26 H 0.260 0.740 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.043 0.957 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 -21.946 3.879 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.005 0.995 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.028 4.028 14 N -0.326 5.326 15 C 0.331 3.669 16 O -0.462 6.462 17 C -0.103 4.103 18 C -0.090 4.090 19 C -0.052 4.052 20 Cl -0.015 7.015 21 C -0.092 4.092 22 C -0.050 4.050 23 Cl -0.005 7.005 24 C -0.092 4.092 25 C 0.003 3.997 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.193 0.807 35 H 0.178 0.822 36 H 0.062 0.938 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.492 -21.452 3.950 22.270 hybrid contribution 0.046 1.592 -0.254 1.613 sum -4.445 -19.860 3.696 20.684 Atomic orbital electron populations 1.70079 1.07427 1.27232 1.50766 1.25873 0.95521 1.02884 0.94581 0.85522 0.79340 0.79529 0.77387 1.18378 1.20967 1.20904 1.21542 0.93346 0.91388 1.50922 0.91859 1.18922 0.93131 0.93936 0.92177 0.99466 1.21524 0.97650 0.93950 1.01165 1.21920 0.98983 0.98436 0.97149 1.22335 0.93693 0.87072 0.99742 1.48469 1.05471 1.09337 1.69334 1.18722 0.82537 0.88687 0.76940 1.90801 1.62996 1.40702 1.51727 1.19583 0.97732 0.93049 0.99986 1.21118 0.93720 0.96423 0.97747 1.20542 0.93683 0.94016 0.96975 1.98401 1.43746 1.95574 1.63730 1.21292 0.94613 1.00364 0.92968 1.20547 0.97248 0.90354 0.96878 1.98409 1.86948 1.49232 1.65900 1.21385 0.99718 0.90093 0.97995 1.21798 0.97299 0.82194 0.98399 0.93125 0.92103 0.92895 0.93246 0.87610 0.87654 0.89101 0.85009 0.80702 0.82222 0.93829 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.22 11.40 21.45 0.24 -54.98 16 2 C 0.01 0.60 5.31 84.65 0.45 1.05 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.53 -28.89 8.56 25.60 0.22 -28.67 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.85 2.25 -11.46 -0.03 1.83 16 10 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 11 C -0.11 -3.91 5.11 30.63 0.16 -3.76 16 12 C -0.13 -3.61 6.08 30.67 0.19 -3.42 16 13 C 0.09 2.53 5.38 86.36 0.46 3.00 16 14 N -0.60 -23.17 2.97 -822.29 -2.44 -25.62 16 15 C 0.54 21.83 7.24 86.79 0.63 22.46 16 16 O -0.58 -29.59 16.47 -3.89 -0.06 -29.66 16 17 C -0.10 -2.91 5.00 -20.10 -0.10 -3.01 16 18 C -0.07 -1.91 9.52 22.55 0.21 -1.69 16 19 C -0.03 -0.52 6.31 22.28 0.14 -0.38 16 20 Cl -0.04 -0.83 28.95 -2.72 -0.08 -0.91 16 21 C -0.07 -1.21 9.60 22.37 0.21 -0.99 16 22 C -0.02 -0.40 6.31 22.29 0.14 -0.26 16 23 Cl -0.03 -0.49 28.95 -2.72 -0.08 -0.57 16 24 C -0.07 -1.57 7.14 22.55 0.16 -1.41 16 25 C 0.12 6.09 5.39 86.36 0.47 6.55 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.30 4.56 -2.38 -0.01 2.29 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.16 3.01 7.07 -2.91 -0.02 2.99 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 4.57 5.16 -2.39 -0.01 4.56 16 Total: -1.00 -69.17 334.75 4.02 -65.15 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.10 Total: 9.41 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 3.31 Total: -8.71 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -2.20 Total: -80.60 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.16 Total: -1.48 kcal Total: -69.17 4.02 -65.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397701454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.893 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds