Wall clock time and date at job start Tue Mar 31 2020 15:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48500 * 109.46896 * 274.99641 * 3 2 1 5 5 H 1.48495 * 109.47258 * 34.99255 * 3 2 1 6 6 H 1.48500 * 109.46752 * 154.99739 * 3 2 1 7 7 C 1.37870 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00117 * 176.06664 * 7 2 1 9 9 C 1.50707 * 120.00226 * 356.06624 * 7 2 1 10 10 H 1.09000 * 109.49394 * 305.75048 * 9 7 2 11 11 C 1.53047 * 109.49833 * 185.68697 * 9 7 2 12 12 C 1.53040 * 109.53504 * 178.65112 * 11 9 7 13 13 C 1.53188 * 109.31370 * 61.36707 * 12 11 9 14 14 N 1.46921 * 108.77410 * 305.36150 * 13 12 11 15 15 C 1.34784 * 120.63161 * 233.58548 * 14 13 12 16 16 O 1.21570 * 119.99984 * 184.02752 * 15 14 13 17 17 C 1.47701 * 119.99740 * 3.74681 * 15 14 13 18 18 C 1.39661 * 120.14708 * 306.40267 * 17 15 14 19 19 C 1.37837 * 119.88080 * 179.97438 * 18 17 15 20 20 C 1.38577 * 120.17123 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 119.85659 * 179.97438 * 20 19 18 22 22 C 1.38416 * 120.28419 * 0.02562 * 20 19 18 23 23 C 1.38092 * 120.11874 * 359.67759 * 22 20 19 24 24 Cl 1.73602 * 120.08552 * 180.29899 * 23 22 20 25 25 C 1.46933 * 118.74103 * 53.86357 * 14 13 12 26 26 H 0.97005 * 119.99571 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.45690 * 58.63189 * 11 9 7 28 28 H 1.08998 * 109.45824 * 298.67350 * 11 9 7 29 29 H 1.08999 * 109.49764 * 301.40973 * 12 11 9 30 30 H 1.09001 * 109.49462 * 181.31940 * 12 11 9 31 31 H 1.08998 * 109.58632 * 185.57226 * 13 12 11 32 32 H 1.09002 * 109.58428 * 65.14823 * 13 12 11 33 33 H 1.08004 * 120.06038 * 359.97438 * 18 17 15 34 34 H 1.08004 * 119.91500 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.93726 * 179.97438 * 22 20 19 36 36 H 1.08999 * 109.58236 * 65.92008 * 25 14 13 37 37 H 1.08996 * 109.58879 * 186.35210 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5035 2.6199 0.8029 6 1 3.5956 1.4118 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0826 -1.1952 -0.0647 9 6 1.2535 -2.4977 0.0884 10 1 0.6026 -2.4836 0.9626 11 6 2.2493 -3.6534 0.2116 12 6 1.4870 -4.9746 0.3358 13 6 0.6450 -5.1942 -0.9249 14 7 -0.2131 -4.0196 -1.1310 15 6 -1.5457 -4.1598 -1.2772 16 8 -2.2360 -3.1890 -1.5200 17 6 -2.1664 -5.4938 -1.1486 18 6 -1.6967 -6.5628 -1.9149 19 6 -2.2796 -7.8056 -1.7901 20 6 -3.3303 -7.9965 -0.9070 21 17 -4.0589 -9.5650 -0.7569 22 6 -3.8021 -6.9417 -0.1449 23 6 -3.2228 -5.6931 -0.2560 24 17 -3.8100 -4.3726 0.7060 25 6 0.4096 -2.6897 -1.1808 26 1 -0.4850 0.8401 0.0004 27 1 2.8682 -3.5066 1.0968 28 1 2.8837 -3.6820 -0.6742 29 1 0.8338 -4.9372 1.2076 30 1 2.1963 -5.7947 0.4471 31 1 0.0253 -6.0822 -0.8004 32 1 1.3019 -5.3223 -1.7853 33 1 -0.8781 -6.4159 -2.6041 34 1 -1.9171 -8.6325 -2.3828 35 1 -4.6215 -7.0967 0.5413 36 1 1.0477 -2.6178 -2.0615 37 1 -0.3655 -1.9247 -1.2250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397707707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:18 Heat of formation + Delta-G solvation = -26.162076 kcal Electronic energy + Delta-G solvation = -23365.415464 eV Core-core repulsion = 19773.056735 eV Total energy + Delta-G solvation = -3592.358729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33778 -38.62877 -36.98309 -36.57232 -36.32717 -33.47243 -31.96872 -31.27095 -30.95290 -29.68727 -25.35013 -25.08159 -23.25536 -22.98109 -21.83112 -20.14125 -18.75602 -17.45972 -17.00580 -16.22199 -16.16631 -15.49129 -14.90542 -14.64645 -14.27217 -14.15985 -13.89130 -13.68266 -13.61180 -12.93899 -12.67168 -12.46090 -12.42430 -12.24884 -11.92514 -11.88199 -11.31759 -11.26994 -11.02962 -10.90067 -10.85082 -10.55918 -10.41452 -10.28211 -9.91733 -9.48210 -9.20888 -9.10492 -8.92421 -8.84494 -8.49200 -7.81815 -6.02048 -4.10125 0.53806 0.81406 1.61056 2.17026 2.89077 3.26384 3.31396 3.37828 3.40238 3.64008 4.41239 4.41730 4.58798 4.67180 4.91184 5.01644 5.24435 5.28942 5.37450 5.45016 5.56705 5.65402 5.76089 5.87251 5.93479 6.13276 6.19659 6.27548 6.56971 6.61562 6.80584 6.93227 7.08631 7.17741 7.59569 7.81828 7.95284 8.12891 8.35289 8.70447 8.94737 9.55799 11.04080 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.003514 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.684448 B = 7966.033918 C = 8683.322711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.100 3.900 14 N -0.595 5.595 15 C 0.546 3.454 16 O -0.513 6.513 17 C -0.100 4.100 18 C -0.070 4.070 19 C -0.112 4.112 20 C -0.015 4.015 21 Cl -0.060 7.060 22 C -0.109 4.109 23 C 0.011 3.989 24 Cl -0.027 7.027 25 C 0.116 3.884 26 H 0.263 0.737 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.045 0.955 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 -18.865 -2.037 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.024 4.024 14 N -0.327 5.327 15 C 0.331 3.669 16 O -0.388 6.388 17 C -0.104 4.104 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.042 4.042 21 Cl -0.031 7.031 22 C -0.128 4.128 23 C -0.017 4.017 24 Cl 0.002 6.998 25 C -0.004 4.004 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.064 0.936 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.582 -18.197 -2.062 19.145 hybrid contribution 0.363 0.764 0.140 0.857 sum -5.219 -17.433 -1.922 18.299 Atomic orbital electron populations 1.69925 1.05754 1.26866 1.48994 1.25053 0.94861 0.99253 0.94777 0.86594 0.79904 0.83611 0.77991 1.20723 1.21176 1.19884 1.21060 0.93055 0.90089 1.51853 0.92368 1.19058 0.92755 0.92187 0.93837 0.94912 1.21637 0.98567 0.94044 1.00596 1.21946 0.98789 0.99168 0.97294 1.21893 0.93662 0.88332 0.98465 1.48471 1.05091 1.09853 1.69282 1.17976 0.82851 0.87172 0.78937 1.90850 1.61551 1.38953 1.47485 1.20271 0.96536 0.96032 0.97561 1.21283 0.98941 0.90601 0.98049 1.21051 0.95386 0.98190 0.98496 1.20872 0.96957 0.86995 0.99386 1.98385 1.82307 1.25263 1.97161 1.20850 1.01303 0.89867 1.00772 1.20811 0.95461 0.90054 0.95355 1.98451 1.87071 1.45459 1.68821 1.22450 0.98364 0.80427 0.99134 0.92670 0.92894 0.93193 0.92105 0.92143 0.90727 0.91679 0.83461 0.83811 0.83456 0.93632 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 11.69 55.43 0.65 -24.70 16 2 C 0.06 1.75 5.36 -17.82 -0.10 1.65 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.87 8.49 -34.44 -0.29 -14.17 16 8 H 0.06 1.52 7.75 -52.48 -0.41 1.11 16 9 C 0.04 0.98 2.19 -91.42 -0.20 0.78 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.13 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 13 C 0.10 1.47 5.50 -3.72 -0.02 1.45 16 14 N -0.59 -11.45 2.97 -173.67 -0.52 -11.97 16 15 C 0.55 10.71 6.62 -12.39 -0.08 10.62 16 16 O -0.51 -12.21 15.58 5.30 0.08 -12.13 16 17 C -0.10 -1.52 4.90 -104.94 -0.51 -2.03 16 18 C -0.07 -0.79 7.42 -39.20 -0.29 -1.08 16 19 C -0.11 -1.06 9.81 -39.60 -0.39 -1.44 16 20 C -0.01 -0.15 6.33 -39.39 -0.25 -0.40 16 21 Cl -0.06 -0.53 28.95 -51.86 -1.50 -2.03 16 22 C -0.11 -1.24 9.60 -39.57 -0.38 -1.62 16 23 C 0.01 0.16 6.34 -39.08 -0.25 -0.08 16 24 Cl -0.03 -0.45 27.37 -51.86 -1.42 -1.87 16 25 C 0.12 2.71 5.49 -3.48 -0.02 2.69 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.92 4.73 -51.93 -0.25 0.68 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.15 1.41 7.34 -52.48 -0.39 1.03 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.12 3.24 5.46 -51.93 -0.28 2.96 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -30.44 333.32 -10.04 -40.48 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.26 Total: -0.69 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.08 Total: -8.14 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.13 Total: -36.67 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -2.92 Total: -3.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.44 -10.04 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397707707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.315 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds