Wall clock time and date at job start Tue Mar 31 2020 15:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48500 * 109.46896 * 274.99641 * 3 2 1 5 5 H 1.48495 * 109.47258 * 34.99255 * 3 2 1 6 6 H 1.48500 * 109.46752 * 154.99739 * 3 2 1 7 7 C 1.37870 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00117 * 176.06664 * 7 2 1 9 9 C 1.50707 * 120.00226 * 356.06624 * 7 2 1 10 10 H 1.09000 * 109.49394 * 305.75048 * 9 7 2 11 11 C 1.53047 * 109.49833 * 185.68697 * 9 7 2 12 12 C 1.53040 * 109.53504 * 178.65112 * 11 9 7 13 13 C 1.53188 * 109.31370 * 61.36707 * 12 11 9 14 14 N 1.46921 * 108.77410 * 305.36150 * 13 12 11 15 15 C 1.34784 * 120.63161 * 233.58548 * 14 13 12 16 16 O 1.21570 * 119.99984 * 184.02752 * 15 14 13 17 17 C 1.47701 * 119.99740 * 3.74681 * 15 14 13 18 18 C 1.39661 * 120.14708 * 306.40267 * 17 15 14 19 19 C 1.37837 * 119.88080 * 179.97438 * 18 17 15 20 20 C 1.38577 * 120.17123 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 119.85659 * 179.97438 * 20 19 18 22 22 C 1.38416 * 120.28419 * 0.02562 * 20 19 18 23 23 C 1.38092 * 120.11874 * 359.67759 * 22 20 19 24 24 Cl 1.73602 * 120.08552 * 180.29899 * 23 22 20 25 25 C 1.46933 * 118.74103 * 53.86357 * 14 13 12 26 26 H 0.97005 * 119.99571 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.45690 * 58.63189 * 11 9 7 28 28 H 1.08998 * 109.45824 * 298.67350 * 11 9 7 29 29 H 1.08999 * 109.49764 * 301.40973 * 12 11 9 30 30 H 1.09001 * 109.49462 * 181.31940 * 12 11 9 31 31 H 1.08998 * 109.58632 * 185.57226 * 13 12 11 32 32 H 1.09002 * 109.58428 * 65.14823 * 13 12 11 33 33 H 1.08004 * 120.06038 * 359.97438 * 18 17 15 34 34 H 1.08004 * 119.91500 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.93726 * 179.97438 * 22 20 19 36 36 H 1.08999 * 109.58236 * 65.92008 * 25 14 13 37 37 H 1.08996 * 109.58879 * 186.35210 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5035 2.6199 0.8029 6 1 3.5956 1.4118 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0826 -1.1952 -0.0647 9 6 1.2535 -2.4977 0.0884 10 1 0.6026 -2.4836 0.9626 11 6 2.2493 -3.6534 0.2116 12 6 1.4870 -4.9746 0.3358 13 6 0.6450 -5.1942 -0.9249 14 7 -0.2131 -4.0196 -1.1310 15 6 -1.5457 -4.1598 -1.2772 16 8 -2.2360 -3.1890 -1.5200 17 6 -2.1664 -5.4938 -1.1486 18 6 -1.6967 -6.5628 -1.9149 19 6 -2.2796 -7.8056 -1.7901 20 6 -3.3303 -7.9965 -0.9070 21 17 -4.0589 -9.5650 -0.7569 22 6 -3.8021 -6.9417 -0.1449 23 6 -3.2228 -5.6931 -0.2560 24 17 -3.8100 -4.3726 0.7060 25 6 0.4096 -2.6897 -1.1808 26 1 -0.4850 0.8401 0.0004 27 1 2.8682 -3.5066 1.0968 28 1 2.8837 -3.6820 -0.6742 29 1 0.8338 -4.9372 1.2076 30 1 2.1963 -5.7947 0.4471 31 1 0.0253 -6.0822 -0.8004 32 1 1.3019 -5.3223 -1.7853 33 1 -0.8781 -6.4159 -2.6041 34 1 -1.9171 -8.6325 -2.3828 35 1 -4.6215 -7.0967 0.5413 36 1 1.0477 -2.6178 -2.0615 37 1 -0.3655 -1.9247 -1.2250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397707707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:17 Heat of formation + Delta-G solvation = -43.189811 kcal Electronic energy + Delta-G solvation = -23366.153842 eV Core-core repulsion = 19773.056735 eV Total energy + Delta-G solvation = -3593.097107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59465 -39.84112 -38.31924 -37.76210 -37.34617 -35.30807 -33.58222 -32.39698 -31.97233 -31.30810 -27.14880 -26.60283 -24.33107 -24.11378 -23.35636 -21.61696 -20.21197 -18.81934 -18.23709 -17.95904 -17.33982 -16.87382 -16.53911 -15.91947 -15.66480 -15.30222 -15.16406 -14.91276 -14.84928 -14.52903 -14.33750 -13.80856 -13.64507 -13.43048 -13.37820 -12.94105 -12.90340 -12.74230 -12.34331 -12.29402 -12.12869 -12.10377 -12.00712 -11.75935 -11.60695 -11.14005 -10.93638 -10.75014 -10.54098 -10.08802 -9.86564 -9.42805 -8.11571 -6.27370 -0.45209 -0.08109 0.71680 1.16460 1.40114 1.41221 1.52242 1.60063 2.05410 2.36339 2.42730 3.17849 3.39099 3.54853 3.86282 3.97821 4.05427 4.06018 4.17658 4.32867 4.53265 4.59143 4.65033 4.76734 4.79276 4.86655 4.90585 4.98037 5.09860 5.23825 5.27297 5.33609 5.36533 5.54749 5.61854 5.89896 5.97509 6.32899 6.57428 6.86233 7.20851 7.42943 8.92834 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022065 B = 0.003514 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.684448 B = 7966.033918 C = 8683.322711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.095 3.905 14 N -0.598 5.598 15 C 0.541 3.459 16 O -0.571 6.571 17 C -0.123 4.123 18 C -0.061 4.061 19 C -0.091 4.091 20 C -0.009 4.009 21 Cl -0.040 7.040 22 C -0.104 4.104 23 C -0.006 4.006 24 Cl -0.063 7.063 25 C 0.130 3.870 26 H 0.258 0.742 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.162 0.838 36 H 0.046 0.954 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -22.727 -3.036 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.165 4.165 13 C -0.026 4.026 14 N -0.329 5.329 15 C 0.329 3.671 16 O -0.450 6.450 17 C -0.127 4.127 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.036 4.036 21 Cl -0.010 7.010 22 C -0.123 4.123 23 C -0.034 4.034 24 Cl -0.033 7.033 25 C 0.008 3.992 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.202 0.798 35 H 0.180 0.820 36 H 0.064 0.936 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.024 -22.114 -3.053 22.684 hybrid contribution -0.143 1.807 0.442 1.865 sum -4.167 -20.307 -2.612 20.894 Atomic orbital electron populations 1.70127 1.07466 1.27175 1.50556 1.25891 0.95504 1.02910 0.94661 0.85574 0.78930 0.79310 0.78049 1.20177 1.21504 1.18549 1.21513 0.93462 0.91456 1.50817 0.91874 1.18978 0.93125 0.93728 0.92146 0.99599 1.21522 0.97639 0.94066 1.01031 1.21918 0.99124 0.98395 0.97110 1.22275 0.93796 0.87367 0.99164 1.48456 1.05810 1.09667 1.68990 1.18666 0.82544 0.88516 0.77404 1.90807 1.62777 1.41530 1.49930 1.19975 0.97836 0.94644 1.00252 1.21512 0.99329 0.89925 0.97154 1.21442 0.93846 0.98246 0.97373 1.21025 0.96709 0.87351 0.98514 1.98406 1.82016 1.23592 1.97029 1.20965 1.01334 0.88927 1.01113 1.20928 0.96279 0.90224 0.95925 1.98436 1.87533 1.47516 1.69854 1.21818 0.96765 0.81957 0.98613 0.93268 0.93128 0.91943 0.93780 0.87550 0.87585 0.88775 0.81158 0.79809 0.82044 0.93614 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.07 11.69 21.45 0.25 -55.82 16 2 C 0.01 0.56 5.36 84.65 0.45 1.01 16 3 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.53 -29.20 8.49 25.60 0.22 -28.99 16 8 H 0.06 3.31 7.75 -2.91 -0.02 3.28 16 9 C 0.04 1.97 2.19 -11.31 -0.02 1.95 16 10 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 11 C -0.10 -3.93 5.11 30.62 0.16 -3.78 16 12 C -0.13 -3.65 6.08 30.67 0.19 -3.47 16 13 C 0.10 2.54 5.50 86.36 0.47 3.01 16 14 N -0.60 -23.27 2.97 -821.64 -2.44 -25.70 16 15 C 0.54 21.90 6.62 86.74 0.57 22.47 16 16 O -0.57 -29.16 15.58 -3.94 -0.06 -29.22 16 17 C -0.12 -3.63 4.90 -20.07 -0.10 -3.73 16 18 C -0.06 -1.15 7.42 22.52 0.17 -0.98 16 19 C -0.09 -1.25 9.81 22.26 0.22 -1.03 16 20 C -0.01 -0.14 6.33 22.39 0.14 0.00 16 21 Cl -0.04 -0.54 28.95 -2.72 -0.08 -0.62 16 22 C -0.10 -2.18 9.60 22.28 0.21 -1.97 16 23 C -0.01 -0.16 6.34 22.60 0.14 -0.02 16 24 Cl -0.06 -2.19 27.37 -2.72 -0.07 -2.26 16 25 C 0.13 6.38 5.49 86.51 0.48 6.85 16 26 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.19 4.73 -2.39 -0.01 2.18 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.17 2.44 7.34 -2.91 -0.02 2.42 16 34 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.07 4.04 5.46 -2.39 -0.01 4.03 16 Total: -1.00 -73.95 333.32 4.02 -69.93 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.10 Total: 5.93 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 3.30 Total: -8.66 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.19 Total: -81.53 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.15 Total: -2.88 kcal Total: -73.95 4.02 -69.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397707707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.736 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds