Wall clock time and date at job start Tue Mar 31 2020 15:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00533 * 2 1 4 4 H 1.48502 * 109.47224 * 239.99885 * 3 2 1 5 5 H 1.48508 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47178 * 119.99467 * 3 2 1 7 7 C 1.37879 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52537 * 174.99705 * 10 9 7 12 12 C 1.53032 * 109.28143 * 177.56255 * 11 10 9 13 13 N 1.46849 * 109.51979 * 300.81927 * 12 11 10 14 14 C 1.46903 * 110.99732 * 185.83699 * 13 12 11 15 15 C 1.50712 * 109.46962 * 170.00139 * 14 13 12 16 16 C 1.34500 * 125.77654 * 90.28152 * 15 14 13 17 17 C 1.41395 * 106.84702 * 180.14064 * 16 15 14 18 18 C 1.34626 * 106.83185 * 359.60034 * 17 16 15 19 19 Br 1.89098 * 125.79674 * 180.21941 * 18 17 16 20 20 O 1.34309 * 108.40372 * 0.24634 * 18 17 16 21 21 C 1.46854 * 111.19623 * 61.74612 * 13 12 11 22 22 C 1.53031 * 109.52201 * 298.25095 * 21 13 12 23 23 H 0.97000 * 119.99329 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47065 * 59.99627 * 9 7 2 25 25 H 1.09003 * 109.46723 * 299.99941 * 9 7 2 26 26 H 1.09010 * 109.52401 * 54.87368 * 10 9 7 27 27 H 1.08999 * 109.49735 * 57.61812 * 11 10 9 28 28 H 1.09000 * 109.53708 * 297.52535 * 11 10 9 29 29 H 1.09004 * 109.46187 * 180.81011 * 12 11 10 30 30 H 1.08991 * 109.45565 * 60.83174 * 12 11 10 31 31 H 1.09002 * 109.47184 * 50.00472 * 14 13 12 32 32 H 1.09002 * 109.47686 * 290.00308 * 14 13 12 33 33 H 1.07997 * 126.57807 * 0.02562 * 16 15 14 34 34 H 1.08002 * 126.58661 * 179.87383 * 17 16 15 35 35 H 1.09001 * 109.46122 * 58.27239 * 21 13 12 36 36 H 1.09003 * 109.46136 * 178.23719 * 21 13 12 37 37 H 1.09000 * 109.50618 * 299.24192 * 22 21 13 38 38 H 1.08998 * 109.50354 * 179.12077 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4848 -4.9853 0.1264 12 6 2.4789 -6.1472 0.0647 13 7 3.2093 -6.1008 -1.2085 14 6 4.0733 -7.2789 -1.3628 15 6 4.6138 -7.3247 -2.7689 16 6 5.7606 -6.7616 -3.1892 17 6 5.8751 -7.0462 -4.5695 18 6 4.7947 -7.7744 -4.9083 19 35 4.4121 -8.4491 -6.6329 20 8 4.0344 -7.9397 -3.8135 21 6 3.9848 -4.8598 -1.3308 22 6 3.0356 -3.6596 -1.3108 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.9311 -3.5550 0.8408 27 1 0.7703 -5.0737 -0.6921 28 1 0.9533 -5.0113 1.0777 29 1 1.9392 -7.0913 0.1396 30 1 3.1844 -6.0655 0.8914 31 1 3.4951 -8.1818 -1.1662 32 1 4.9016 -7.2170 -0.6570 33 1 6.4591 -6.1984 -2.5882 34 1 6.6776 -6.7419 -5.2251 35 1 4.6834 -4.7845 -0.4975 36 1 4.5390 -4.8689 -2.2694 37 1 2.3456 -3.7272 -2.1518 38 1 3.6127 -2.7380 -1.3859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399265832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:10 Heat of formation + Delta-G solvation = 9.934779 kcal Electronic energy + Delta-G solvation = -19797.697732 eV Core-core repulsion = 16687.600525 eV Total energy + Delta-G solvation = -3110.097208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.81512 -38.80020 -34.89547 -33.37404 -32.65729 -31.95747 -30.46159 -29.83634 -27.63030 -25.25662 -23.33189 -22.66192 -22.02757 -20.77006 -20.46296 -18.93929 -17.30000 -16.67595 -16.21949 -15.48391 -15.10578 -14.61373 -14.47612 -13.97839 -13.54873 -13.21449 -13.16239 -13.03687 -12.82762 -12.33062 -11.95249 -11.87400 -11.59795 -11.51167 -11.10012 -10.87657 -10.83742 -10.67519 -10.59358 -10.28210 -10.13281 -9.95543 -9.53296 -9.05813 -8.88953 -8.64373 -8.31225 -8.20653 -5.96158 -3.97730 0.67988 1.29297 2.27607 3.08918 3.34442 3.39216 3.41131 4.05744 4.48303 4.60101 4.71673 4.98078 5.15483 5.28101 5.34966 5.38752 5.42063 5.54003 5.57954 5.64521 5.69029 5.83146 5.94136 6.10329 6.16512 6.21158 6.40775 6.53880 6.64469 6.76069 6.96324 7.06611 7.18692 7.21820 7.29489 7.71344 7.88175 8.04504 8.47305 9.08628 9.65617 11.15196 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002654 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.597938 B =10547.906358 C =11200.863511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.127 3.873 15 C 0.036 3.964 16 C -0.209 4.209 17 C -0.151 4.151 18 C -0.036 4.036 19 Br 0.044 6.956 20 O -0.152 6.152 21 C 0.050 3.950 22 C -0.099 4.099 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 -20.264 -9.762 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.066 4.066 13 N -0.259 5.259 14 C 0.000 4.000 15 C -0.017 4.017 16 C -0.229 4.229 17 C -0.173 4.173 18 C -0.165 4.165 19 Br 0.128 6.872 20 O -0.048 6.048 21 C -0.078 4.078 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.923 -20.564 -10.757 25.650 hybrid contribution 1.244 1.243 0.870 1.962 sum 12.167 -19.321 -9.887 24.881 Atomic orbital electron populations 1.69957 1.06028 1.26573 1.51000 1.25017 0.94802 0.99124 0.95531 0.86715 0.79625 0.83445 0.78541 1.20278 1.21360 1.20351 1.21215 0.92864 0.91052 1.50244 0.92777 1.19106 0.93609 0.91011 0.97130 1.21247 0.97923 0.94778 0.96086 1.21700 0.97498 0.94103 1.01698 1.22131 0.96304 0.99876 0.88284 1.61918 1.27512 1.01150 1.35354 1.20540 0.96880 0.96153 0.86470 1.22522 0.92951 0.96892 0.89322 1.21642 0.99778 1.06422 0.95077 1.21691 0.98664 1.00586 0.96310 1.23762 0.95896 1.09145 0.87671 1.96826 1.96044 1.86329 1.08044 1.84084 1.44904 1.60215 1.15620 1.22351 0.95533 0.89687 1.00196 1.21537 0.97838 0.95370 0.98902 0.93035 0.96520 0.96755 0.92975 0.91497 0.91869 0.91317 0.94966 0.88926 0.91306 0.82669 0.82462 0.95160 0.91112 0.91876 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.34 8.45 -34.44 -0.29 -14.63 16 8 H 0.05 1.45 7.08 -52.49 -0.37 1.08 16 9 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.64 2.20 -90.50 -0.20 -1.84 16 11 C -0.11 -1.90 5.38 -26.65 -0.14 -2.04 16 12 C 0.06 0.84 5.46 -3.84 -0.02 0.82 16 13 N -0.53 -7.54 4.65 -236.10 -1.10 -8.64 16 14 C 0.13 1.43 5.50 -4.97 -0.03 1.41 16 15 C 0.04 0.45 6.22 -35.62 -0.22 0.22 16 16 C -0.21 -2.32 9.27 -39.70 -0.37 -2.69 16 17 C -0.15 -1.64 10.86 -39.66 -0.43 -2.07 16 18 C -0.04 -0.44 7.80 29.45 0.23 -0.21 16 19 Br 0.04 0.43 34.09 -68.01 -2.32 -1.89 16 20 O -0.15 -2.07 10.65 5.56 0.06 -2.01 16 21 C 0.05 0.75 5.26 -3.83 -0.02 0.73 16 22 C -0.10 -1.85 5.15 -26.65 -0.14 -1.99 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.93 7.99 -51.93 -0.41 0.51 16 32 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.02 5.99 -51.93 -0.31 0.71 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.47 7.05 -51.93 -0.37 1.11 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -30.29 328.80 -10.20 -40.50 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.66 Total: -3.09 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -1.85 Total: -20.17 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.36 Total: -34.91 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: 0.06 Total: -2.01 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -2.32 Total: -1.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.29 -10.20 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399265832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.431 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds