Wall clock time and date at job start Tue Mar 31 2020 15:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00533 * 2 1 4 4 H 1.48502 * 109.47224 * 239.99885 * 3 2 1 5 5 H 1.48508 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47178 * 119.99467 * 3 2 1 7 7 C 1.37879 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00384 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52537 * 174.99705 * 10 9 7 12 12 C 1.53032 * 109.28143 * 177.56255 * 11 10 9 13 13 N 1.46849 * 109.51979 * 300.81927 * 12 11 10 14 14 C 1.46903 * 110.99732 * 185.83699 * 13 12 11 15 15 C 1.50712 * 109.46962 * 170.00139 * 14 13 12 16 16 C 1.34500 * 125.77654 * 90.28152 * 15 14 13 17 17 C 1.41395 * 106.84702 * 180.14064 * 16 15 14 18 18 C 1.34626 * 106.83185 * 359.60034 * 17 16 15 19 19 Br 1.89098 * 125.79674 * 180.21941 * 18 17 16 20 20 O 1.34309 * 108.40372 * 0.24634 * 18 17 16 21 21 C 1.46854 * 111.19623 * 61.74612 * 13 12 11 22 22 C 1.53031 * 109.52201 * 298.25095 * 21 13 12 23 23 H 0.97000 * 119.99329 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47065 * 59.99627 * 9 7 2 25 25 H 1.09003 * 109.46723 * 299.99941 * 9 7 2 26 26 H 1.09010 * 109.52401 * 54.87368 * 10 9 7 27 27 H 1.08999 * 109.49735 * 57.61812 * 11 10 9 28 28 H 1.09000 * 109.53708 * 297.52535 * 11 10 9 29 29 H 1.09004 * 109.46187 * 180.81011 * 12 11 10 30 30 H 1.08991 * 109.45565 * 60.83174 * 12 11 10 31 31 H 1.09002 * 109.47184 * 50.00472 * 14 13 12 32 32 H 1.09002 * 109.47686 * 290.00308 * 14 13 12 33 33 H 1.07997 * 126.57807 * 0.02562 * 16 15 14 34 34 H 1.08002 * 126.58661 * 179.87383 * 17 16 15 35 35 H 1.09001 * 109.46122 * 58.27239 * 21 13 12 36 36 H 1.09003 * 109.46136 * 178.23719 * 21 13 12 37 37 H 1.09000 * 109.50618 * 299.24192 * 22 21 13 38 38 H 1.08998 * 109.50354 * 179.12077 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4848 -4.9853 0.1264 12 6 2.4789 -6.1472 0.0647 13 7 3.2093 -6.1008 -1.2085 14 6 4.0733 -7.2789 -1.3628 15 6 4.6138 -7.3247 -2.7689 16 6 5.7606 -6.7616 -3.1892 17 6 5.8751 -7.0462 -4.5695 18 6 4.7947 -7.7744 -4.9083 19 35 4.4121 -8.4491 -6.6329 20 8 4.0344 -7.9397 -3.8135 21 6 3.9848 -4.8598 -1.3308 22 6 3.0356 -3.6596 -1.3108 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.9311 -3.5550 0.8408 27 1 0.7703 -5.0737 -0.6921 28 1 0.9533 -5.0113 1.0777 29 1 1.9392 -7.0913 0.1396 30 1 3.1844 -6.0655 0.8914 31 1 3.4951 -8.1818 -1.1662 32 1 4.9016 -7.2170 -0.6570 33 1 6.4591 -6.1984 -2.5882 34 1 6.6776 -6.7419 -5.2251 35 1 4.6834 -4.7845 -0.4975 36 1 4.5390 -4.8689 -2.2694 37 1 2.3456 -3.7272 -2.1518 38 1 3.6127 -2.7380 -1.3859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399265832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:09 Heat of formation + Delta-G solvation = -7.477260 kcal Electronic energy + Delta-G solvation = -19798.452775 eV Core-core repulsion = 16687.600525 eV Total energy + Delta-G solvation = -3110.852250 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.67801 -40.05743 -36.40996 -34.52477 -34.16416 -33.02041 -31.72786 -31.06834 -29.15971 -26.61907 -24.90323 -23.95460 -22.91679 -22.26729 -21.37266 -20.43376 -18.42786 -18.17304 -17.60048 -16.68449 -16.38566 -16.10863 -15.63444 -15.12049 -15.03381 -14.59864 -14.27935 -14.00701 -13.96413 -13.85140 -13.42861 -13.15348 -13.05160 -12.79711 -12.60122 -12.33313 -12.27485 -12.15231 -12.00150 -11.70153 -11.64014 -11.25509 -10.99628 -10.82437 -10.70767 -10.50505 -9.52522 -9.22309 -8.16366 -6.26118 -0.13163 0.42159 1.40019 1.42945 1.44811 1.50484 2.25303 2.42524 3.02851 3.16865 3.74795 3.93107 4.01477 4.03304 4.11419 4.25141 4.39980 4.45863 4.54202 4.61737 4.66946 4.78137 4.81347 4.82844 4.85597 4.96571 5.08633 5.16049 5.37500 5.39709 5.42797 5.46253 5.58556 5.81743 5.87864 5.91156 6.12182 6.14023 6.30924 6.90370 7.42308 8.95497 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.002654 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.597938 B =10547.906358 C =11200.863511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.074 4.074 11 C -0.109 4.109 12 C 0.069 3.931 13 N -0.552 5.552 14 C 0.131 3.869 15 C 0.018 3.982 16 C -0.207 4.207 17 C -0.151 4.151 18 C -0.057 4.057 19 Br 0.055 6.945 20 O -0.174 6.174 21 C 0.063 3.937 22 C -0.094 4.094 23 H 0.261 0.739 24 H -0.017 1.017 25 H -0.014 1.014 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.235 -21.030 -9.526 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.057 4.057 13 N -0.278 5.278 14 C 0.004 3.996 15 C -0.034 4.034 16 C -0.228 4.228 17 C -0.173 4.173 18 C -0.185 4.185 19 Br 0.139 6.861 20 O -0.071 6.071 21 C -0.065 4.065 22 C -0.132 4.132 23 H 0.070 0.930 24 H 0.001 0.999 25 H 0.005 0.995 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.192 0.808 34 H 0.196 0.804 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.316 -21.349 -10.520 27.272 hybrid contribution 0.459 1.461 0.750 1.705 sum 13.775 -19.888 -9.771 26.092 Atomic orbital electron populations 1.70108 1.07862 1.27594 1.52195 1.25978 0.95692 1.03298 0.95105 0.85569 0.78309 0.78404 0.79196 1.19216 1.21147 1.19050 1.21643 0.93441 0.92100 1.49603 0.91981 1.19006 0.94055 0.93213 0.94097 1.21090 0.96926 0.94264 0.96982 1.21613 0.97895 0.93968 1.01202 1.22041 0.95886 0.99067 0.88742 1.61797 1.28547 1.01733 1.35722 1.20636 0.97481 0.95057 0.86447 1.22834 0.93535 0.97480 0.89589 1.21956 0.99662 1.05834 0.95316 1.22051 0.98747 0.99749 0.96708 1.24164 0.96396 1.09916 0.88019 1.96821 1.96058 1.86235 1.06986 1.84059 1.45794 1.60928 1.16349 1.22129 0.94535 0.88510 1.01280 1.21403 0.97804 0.96947 0.97040 0.92987 0.99867 0.99524 0.92718 0.93254 0.91539 0.88847 0.93391 0.87565 0.88778 0.80751 0.80361 0.93624 0.90330 0.94222 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.07 8.45 25.60 0.22 -29.85 16 8 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 9 C 0.03 1.78 4.45 29.85 0.13 1.91 16 10 C -0.07 -3.00 2.20 -10.71 -0.02 -3.02 16 11 C -0.11 -3.65 5.38 30.65 0.16 -3.49 16 12 C 0.07 1.73 5.46 86.32 0.47 2.20 16 13 N -0.55 -14.26 4.65 -900.89 -4.19 -18.45 16 14 C 0.13 2.51 5.50 85.56 0.47 2.98 16 15 C 0.02 0.41 6.22 24.83 0.15 0.56 16 16 C -0.21 -4.06 9.27 22.19 0.21 -3.85 16 17 C -0.15 -2.96 10.86 22.22 0.24 -2.72 16 18 C -0.06 -1.30 7.80 66.99 0.52 -0.78 16 19 Br 0.06 1.03 34.09 -20.37 -0.69 0.34 16 20 O -0.17 -4.51 10.65 -3.01 -0.03 -4.54 16 21 C 0.06 1.76 5.26 86.32 0.45 2.22 16 22 C -0.09 -3.53 5.15 30.65 0.16 -3.37 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H 0.05 2.18 8.14 -2.38 -0.02 2.17 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 1.91 8.02 -2.38 -0.02 1.89 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 1.76 7.99 -2.39 -0.02 1.74 16 32 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 33 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.08 2.09 5.99 -2.39 -0.01 2.08 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 2.30 7.05 -2.39 -0.02 2.28 16 Total: -1.00 -67.09 328.80 2.07 -65.02 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.63 Total: -36.97 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -3.90 Total: -76.24 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.03 Total: -4.54 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 35 Polarization: 1.03 SS G_CDS: -0.69 Total: 0.34 kcal Total: -67.09 2.07 -65.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399265832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.547 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds