Wall clock time and date at job start Tue Mar 31 2020 15:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00378 * 2 1 4 4 H 1.48496 * 109.47365 * 264.90924 * 3 2 1 5 5 H 1.48498 * 109.47215 * 24.90740 * 3 2 1 6 6 H 1.48503 * 109.47231 * 144.90832 * 3 2 1 7 7 C 1.37883 * 119.99332 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00373 * 0.47282 * 7 2 1 9 9 C 1.50704 * 119.99600 * 180.46415 * 7 2 1 10 10 C 1.52998 * 115.54708 * 86.37752 * 9 7 2 11 11 N 1.46500 * 109.47330 * 64.86804 * 10 9 7 12 12 C 1.34776 * 120.00452 * 184.97357 * 11 10 9 13 13 O 1.21278 * 119.99841 * 355.11733 * 12 11 10 14 14 C 1.50696 * 120.00118 * 175.11169 * 12 11 10 15 15 C 1.50705 * 109.47043 * 179.57796 * 14 12 11 16 16 C 1.38259 * 119.98577 * 269.72814 * 15 14 12 17 17 C 1.38201 * 120.03904 * 179.76839 * 16 15 14 18 18 C 1.38342 * 120.00105 * 0.50608 * 17 16 15 19 19 Cl 1.73602 * 120.01906 * 179.72710 * 18 17 16 20 20 C 1.38437 * 119.96079 * 359.74530 * 18 17 16 21 21 Cl 1.73602 * 120.01889 * 180.02562 * 20 18 17 22 22 C 1.38207 * 119.97619 * 90.00397 * 15 14 12 23 23 C 1.52997 * 117.50089 * 232.04781 * 9 7 2 24 24 C 1.52995 * 117.50136 * 300.70909 * 9 7 2 25 25 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47216 * 304.87126 * 10 9 7 27 27 H 1.08994 * 109.47061 * 184.86847 * 10 9 7 28 28 H 0.97006 * 119.99886 * 5.24960 * 11 10 9 29 29 H 1.09001 * 109.47590 * 299.58025 * 14 12 11 30 30 H 1.08998 * 109.46978 * 59.58149 * 14 12 11 31 31 H 1.08006 * 119.97674 * 359.97438 * 16 15 14 32 32 H 1.08004 * 119.99655 * 180.25569 * 17 16 15 33 33 H 1.07994 * 120.00295 * 359.95395 * 22 15 14 34 34 H 1.09001 * 117.49838 * 215.01110 * 23 9 7 35 35 H 1.09002 * 117.49827 * 0.02562 * 23 9 7 36 36 H 1.08997 * 117.49931 * 359.97216 * 24 9 7 37 37 H 1.08997 * 117.49991 * 144.97555 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6043 1.9842 -1.3945 5 1 1.3971 2.6813 0.5896 6 1 3.4888 1.4734 0.8049 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 -0.0068 9 6 3.5114 -1.1943 0.0111 10 6 4.1615 -1.1121 1.3936 11 7 3.8375 -2.3189 2.1583 12 6 4.2205 -2.4239 3.4462 13 8 4.9089 -1.5598 3.9464 14 6 3.7932 -3.6149 4.2647 15 6 4.3582 -3.4965 5.6568 16 6 5.5963 -4.0385 5.9484 17 6 6.1176 -3.9264 7.2234 18 6 5.3960 -3.2807 8.2115 19 17 6.0473 -3.1458 9.8150 20 6 4.1541 -2.7426 7.9208 21 17 3.2476 -1.9315 9.1594 22 6 3.6359 -2.8512 6.6426 23 6 4.2254 -2.0251 -1.0570 24 6 4.2261 -0.4971 -1.1482 25 1 -0.4850 0.8401 -0.0004 26 1 3.7845 -0.2358 1.9210 27 1 5.2428 -1.0318 1.2825 28 1 3.3507 -3.0442 1.7364 29 1 2.7049 -3.6491 4.3160 30 1 4.1638 -4.5279 3.7986 31 1 6.1578 -4.5468 5.1785 32 1 7.0866 -4.3464 7.4494 33 1 2.6673 -2.4313 6.4151 34 1 5.1582 -2.5132 -0.7747 35 1 3.6051 -2.5713 -1.7677 36 1 3.6063 -0.0387 -1.9188 37 1 5.1593 0.0204 -0.9259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404182313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:15 Heat of formation + Delta-G solvation = -8.238553 kcal Electronic energy + Delta-G solvation = -22219.514966 eV Core-core repulsion = 18627.933459 eV Total energy + Delta-G solvation = -3591.581506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.09262 -38.90092 -37.16694 -36.70126 -36.65182 -33.51564 -32.75785 -32.18455 -31.10417 -28.33413 -26.34580 -25.03303 -23.19377 -22.11425 -21.75708 -19.95383 -19.23831 -17.53440 -16.88878 -16.40497 -16.33139 -15.88407 -15.18706 -15.06351 -14.60668 -14.24422 -14.09247 -13.87050 -13.68132 -13.13002 -12.91494 -12.67857 -12.36913 -12.08805 -12.05498 -12.01033 -11.59000 -11.43659 -11.22033 -11.17035 -11.02886 -10.81781 -10.54540 -10.25489 -9.81063 -9.56088 -9.25093 -9.12045 -8.79900 -8.71044 -8.61098 -8.38657 -6.21394 -4.26461 0.75290 0.92636 1.66230 2.03065 2.97742 3.17489 3.24961 3.35368 3.39179 3.75961 4.34887 4.40135 4.43598 4.81037 4.86565 4.91287 5.02936 5.06734 5.23490 5.29789 5.47944 5.56724 5.62725 5.73938 5.82299 5.94618 6.00288 6.16267 6.20274 6.35677 6.38328 6.45709 6.64123 6.92605 7.00566 7.04564 7.61764 8.04967 8.34806 8.65099 8.78269 9.41671 10.89848 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.002805 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.705160 B = 9978.223155 C =10710.279174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.259 1.259 7 C -0.492 4.492 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.156 3.844 11 N -0.701 5.701 12 C 0.508 3.492 13 O -0.549 6.549 14 C -0.108 4.108 15 C -0.038 4.038 16 C -0.090 4.090 17 C -0.098 4.098 18 C -0.035 4.035 19 Cl -0.057 7.057 20 C -0.028 4.028 21 Cl -0.053 7.053 22 C -0.084 4.084 23 C -0.178 4.178 24 C -0.195 4.195 25 H 0.266 0.734 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.404 0.596 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.981 -10.221 13.637 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.122 4.122 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.097 0.903 9 C -0.017 4.017 10 C 0.032 3.968 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.427 6.427 14 C -0.147 4.147 15 C -0.039 4.039 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.062 4.062 19 Cl -0.028 7.028 20 C -0.055 4.055 21 Cl -0.024 7.024 22 C -0.103 4.103 23 C -0.215 4.215 24 C -0.232 4.232 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.239 0.761 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.248 -9.369 14.243 19.891 hybrid contribution 0.062 0.828 -0.082 0.835 sum 10.310 -8.541 14.161 19.488 Atomic orbital electron populations 1.69875 1.06368 1.27363 1.49472 1.24961 0.94584 0.99132 0.93573 0.86881 0.80403 0.83242 0.78802 1.20173 1.22065 1.18382 1.20176 0.86000 0.94511 1.52209 0.90342 1.19627 0.95260 1.00783 0.86060 1.21167 0.96713 0.86682 0.92218 1.45826 1.57151 1.21103 1.10942 1.20274 0.80587 0.87480 0.82396 1.90703 1.38308 1.42342 1.71367 1.20747 1.03488 0.98919 0.91590 1.19387 0.94251 0.96090 0.94192 1.21068 0.94736 0.99021 0.96015 1.20959 1.00024 0.98914 0.91808 1.20731 0.94042 1.03419 0.88054 1.98377 1.85661 1.96844 1.21935 1.20688 0.92767 1.00686 0.91364 1.98387 1.73652 1.77597 1.52741 1.20939 1.01146 0.98250 0.89961 1.22840 1.01088 0.92993 1.04619 1.22973 1.01487 0.95071 1.03707 0.92403 0.91552 0.93928 0.76134 0.87164 0.87531 0.84477 0.84093 0.83919 0.90885 0.89366 0.89064 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.05 24.81 -169.99 -4.22 16.84 16 4 H -0.28 -6.44 7.04 56.52 0.40 -6.04 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.02 5.90 56.52 0.33 -5.68 16 7 C -0.49 -12.45 9.30 -34.44 -0.32 -12.77 16 8 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 9 C -0.02 -0.34 0.84 -155.66 -0.13 -0.47 16 10 C 0.16 3.12 5.20 -4.04 -0.02 3.09 16 11 N -0.70 -11.81 5.45 -60.30 -0.33 -12.14 16 12 C 0.51 8.12 7.82 -10.99 -0.09 8.04 16 13 O -0.55 -10.92 16.04 5.56 0.09 -10.83 16 14 C -0.11 -1.18 5.83 -29.03 -0.17 -1.35 16 15 C -0.04 -0.45 4.37 -104.62 -0.46 -0.90 16 16 C -0.09 -0.93 9.70 -39.59 -0.38 -1.31 16 17 C -0.10 -0.99 9.83 -39.56 -0.39 -1.38 16 18 C -0.03 -0.40 6.32 -39.47 -0.25 -0.65 16 19 Cl -0.06 -0.61 27.96 -51.86 -1.45 -2.06 16 20 C -0.03 -0.34 6.32 -39.47 -0.25 -0.59 16 21 Cl -0.05 -0.63 27.96 -51.86 -1.45 -2.08 16 22 C -0.08 -1.03 9.48 -39.55 -0.38 -1.41 16 23 C -0.18 -3.23 9.96 -26.70 -0.27 -3.49 16 24 C -0.19 -3.85 7.62 -26.70 -0.20 -4.06 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.07 1.51 6.66 -51.93 -0.35 1.16 16 27 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.40 6.08 8.46 -40.82 -0.35 5.74 16 29 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.09 1.91 7.17 -51.93 -0.37 1.54 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -30.55 345.80 -9.26 -39.81 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.49 Total: 5.51 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -3.40 Total: -15.17 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.44 Total: -37.23 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.22 Total: 16.84 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -2.90 Total: -4.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.55 -9.26 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404182313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.573 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds