Wall clock time and date at job start Tue Mar 31 2020 15:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86790 * 120.00378 * 2 1 4 4 H 1.48496 * 109.47365 * 264.90924 * 3 2 1 5 5 H 1.48498 * 109.47215 * 24.90740 * 3 2 1 6 6 H 1.48503 * 109.47231 * 144.90832 * 3 2 1 7 7 C 1.37883 * 119.99332 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00373 * 0.47282 * 7 2 1 9 9 C 1.50704 * 119.99600 * 180.46415 * 7 2 1 10 10 C 1.52998 * 115.54708 * 86.37752 * 9 7 2 11 11 N 1.46500 * 109.47330 * 64.86804 * 10 9 7 12 12 C 1.34776 * 120.00452 * 184.97357 * 11 10 9 13 13 O 1.21278 * 119.99841 * 355.11733 * 12 11 10 14 14 C 1.50696 * 120.00118 * 175.11169 * 12 11 10 15 15 C 1.50705 * 109.47043 * 179.57796 * 14 12 11 16 16 C 1.38259 * 119.98577 * 269.72814 * 15 14 12 17 17 C 1.38201 * 120.03904 * 179.76839 * 16 15 14 18 18 C 1.38342 * 120.00105 * 0.50608 * 17 16 15 19 19 Cl 1.73602 * 120.01906 * 179.72710 * 18 17 16 20 20 C 1.38437 * 119.96079 * 359.74530 * 18 17 16 21 21 Cl 1.73602 * 120.01889 * 180.02562 * 20 18 17 22 22 C 1.38207 * 119.97619 * 90.00397 * 15 14 12 23 23 C 1.52997 * 117.50089 * 232.04781 * 9 7 2 24 24 C 1.52995 * 117.50136 * 300.70909 * 9 7 2 25 25 H 0.96998 * 119.99719 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47216 * 304.87126 * 10 9 7 27 27 H 1.08994 * 109.47061 * 184.86847 * 10 9 7 28 28 H 0.97006 * 119.99886 * 5.24960 * 11 10 9 29 29 H 1.09001 * 109.47590 * 299.58025 * 14 12 11 30 30 H 1.08998 * 109.46978 * 59.58149 * 14 12 11 31 31 H 1.08006 * 119.97674 * 359.97438 * 16 15 14 32 32 H 1.08004 * 119.99655 * 180.25569 * 17 16 15 33 33 H 1.07994 * 120.00295 * 359.95395 * 22 15 14 34 34 H 1.09001 * 117.49838 * 215.01110 * 23 9 7 35 35 H 1.09002 * 117.49827 * 0.02562 * 23 9 7 36 36 H 1.08997 * 117.49931 * 359.97216 * 24 9 7 37 37 H 1.08997 * 117.49991 * 144.97555 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6043 1.9842 -1.3945 5 1 1.3971 2.6813 0.5896 6 1 3.4888 1.4734 0.8049 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 -0.0068 9 6 3.5114 -1.1943 0.0111 10 6 4.1615 -1.1121 1.3936 11 7 3.8375 -2.3189 2.1583 12 6 4.2205 -2.4239 3.4462 13 8 4.9089 -1.5598 3.9464 14 6 3.7932 -3.6149 4.2647 15 6 4.3582 -3.4965 5.6568 16 6 5.5963 -4.0385 5.9484 17 6 6.1176 -3.9264 7.2234 18 6 5.3960 -3.2807 8.2115 19 17 6.0473 -3.1458 9.8150 20 6 4.1541 -2.7426 7.9208 21 17 3.2476 -1.9315 9.1594 22 6 3.6359 -2.8512 6.6426 23 6 4.2254 -2.0251 -1.0570 24 6 4.2261 -0.4971 -1.1482 25 1 -0.4850 0.8401 -0.0004 26 1 3.7845 -0.2358 1.9210 27 1 5.2428 -1.0318 1.2825 28 1 3.3507 -3.0442 1.7364 29 1 2.7049 -3.6491 4.3160 30 1 4.1638 -4.5279 3.7986 31 1 6.1578 -4.5468 5.1785 32 1 7.0866 -4.3464 7.4494 33 1 2.6673 -2.4313 6.4151 34 1 5.1582 -2.5132 -0.7747 35 1 3.6051 -2.5713 -1.7677 36 1 3.6063 -0.0387 -1.9188 37 1 5.1593 0.0204 -0.9259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404182313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:15 Heat of formation + Delta-G solvation = -26.133888 kcal Electronic energy + Delta-G solvation = -22220.290965 eV Core-core repulsion = 18627.933459 eV Total energy + Delta-G solvation = -3592.357506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12442 -40.05241 -38.68426 -37.58309 -37.56090 -34.94658 -34.20703 -33.66527 -31.93426 -29.45829 -27.98545 -26.64346 -24.02150 -23.37749 -22.96568 -21.28638 -20.86813 -18.67521 -18.23215 -17.81472 -17.24572 -17.02162 -16.81685 -16.30426 -15.98561 -15.42763 -15.05012 -14.93399 -14.78951 -14.64007 -14.50057 -14.20482 -13.83845 -13.20249 -13.10299 -12.93380 -12.88330 -12.64071 -12.46923 -12.30924 -12.17191 -12.01844 -11.98982 -11.89610 -11.59201 -11.00621 -10.94381 -10.64690 -10.32379 -9.96832 -9.84379 -9.63352 -8.29774 -6.35239 -0.10728 0.09002 0.79268 1.17017 1.33291 1.39509 1.47407 1.74675 2.20869 2.35868 2.61519 3.06245 3.28391 3.54374 3.62575 4.03190 4.07596 4.08863 4.14010 4.23882 4.38357 4.43376 4.50871 4.56316 4.65690 4.77702 4.85601 4.88971 4.92424 5.03194 5.12133 5.32947 5.37113 5.51281 5.59887 5.62739 5.71334 6.29606 6.72299 6.78614 7.35225 7.39662 8.84682 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.002805 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.705160 B = 9978.223155 C =10710.279174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.028 3.972 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.305 1.305 6 H -0.247 1.247 7 C -0.476 4.476 8 H 0.050 0.950 9 C -0.039 4.039 10 C 0.165 3.835 11 N -0.701 5.701 12 C 0.506 3.494 13 O -0.590 6.590 14 C -0.097 4.097 15 C -0.051 4.051 16 C -0.087 4.087 17 C -0.096 4.096 18 C -0.045 4.045 19 Cl -0.054 7.054 20 C -0.044 4.044 21 Cl -0.059 7.059 22 C -0.100 4.100 23 C -0.147 4.147 24 C -0.199 4.199 25 H 0.263 0.737 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.413 0.587 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -11.714 13.353 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.189 1.189 5 H -0.233 1.233 6 H -0.171 1.171 7 C -0.514 4.514 8 H 0.068 0.932 9 C -0.040 4.040 10 C 0.041 3.959 11 N -0.351 5.351 12 C 0.294 3.706 13 O -0.471 6.471 14 C -0.136 4.136 15 C -0.052 4.052 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.073 4.073 19 Cl -0.025 7.025 20 C -0.071 4.071 21 Cl -0.030 7.030 22 C -0.119 4.119 23 C -0.184 4.184 24 C -0.237 4.237 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.249 0.751 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.157 0.843 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.776 -10.895 13.949 21.829 hybrid contribution -0.703 1.205 0.021 1.395 sum 12.073 -9.690 13.970 20.852 Atomic orbital electron populations 1.70002 1.07964 1.27789 1.52555 1.25651 0.95028 1.02221 0.94127 0.86118 0.79563 0.79766 0.79382 1.18900 1.23294 1.17106 1.20391 0.88556 0.92931 1.49498 0.93183 1.19459 0.92846 1.04222 0.87492 1.20833 0.97007 0.86836 0.91243 1.45804 1.57438 1.20420 1.11451 1.21078 0.79330 0.88239 0.81945 1.90685 1.40192 1.44237 1.71965 1.20768 1.04348 0.97944 0.90546 1.19551 0.94969 0.96483 0.94182 1.21429 0.94154 0.98235 0.96696 1.21308 1.00775 0.98024 0.91377 1.20943 0.94009 1.03649 0.88672 1.98375 1.85499 1.96851 1.21789 1.20828 0.93374 1.01469 0.91427 1.98377 1.73879 1.77805 1.52951 1.21060 1.01482 0.98898 0.90446 1.22878 1.01540 0.92093 1.01935 1.23034 1.01839 0.96646 1.02178 0.92753 0.94977 0.92642 0.75068 0.85885 0.83551 0.81702 0.81546 0.84274 0.87565 0.89501 0.90534 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.17 13.96 21.45 0.30 -55.87 16 2 C 0.03 1.53 5.47 84.66 0.46 1.99 16 3 Si 0.93 43.53 24.81 68.60 1.70 45.23 16 4 H -0.26 -11.79 7.04 99.48 0.70 -11.09 16 5 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 6 H -0.25 -11.06 5.90 99.48 0.59 -10.47 16 7 C -0.48 -24.15 9.30 25.60 0.24 -23.91 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C -0.04 -1.57 0.84 -52.93 -0.04 -1.61 16 10 C 0.17 6.33 5.20 86.38 0.45 6.78 16 11 N -0.70 -22.29 5.45 -463.08 -2.52 -24.81 16 12 C 0.51 15.23 7.82 87.66 0.69 15.92 16 13 O -0.59 -22.78 16.04 -3.02 -0.05 -22.82 16 14 C -0.10 -1.86 5.83 29.10 0.17 -1.69 16 15 C -0.05 -1.08 4.37 -19.87 -0.09 -1.17 16 16 C -0.09 -1.53 9.70 22.27 0.22 -1.31 16 17 C -0.10 -1.70 9.83 22.29 0.22 -1.48 16 18 C -0.05 -0.98 6.32 22.34 0.14 -0.84 16 19 Cl -0.05 -1.09 27.96 -2.72 -0.08 -1.17 16 20 C -0.04 -1.05 6.32 22.34 0.14 -0.91 16 21 Cl -0.06 -1.41 27.96 -2.72 -0.08 -1.49 16 22 C -0.10 -2.39 9.48 22.29 0.21 -2.18 16 23 C -0.15 -4.84 9.96 30.62 0.30 -4.53 16 24 C -0.20 -7.33 7.62 30.62 0.23 -7.10 16 25 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 26 H 0.03 1.44 6.66 -2.39 -0.02 1.42 16 27 H 0.06 1.98 8.09 -2.39 -0.02 1.97 16 28 H 0.41 11.54 8.46 -92.70 -0.78 10.75 16 29 H 0.12 2.09 8.08 -2.39 -0.02 2.07 16 30 H 0.15 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.08 3.05 7.17 -2.39 -0.02 3.03 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -67.67 345.80 2.81 -64.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.20 Total: 18.12 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.34 Total: -22.04 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.22 Total: -80.68 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.70 Total: 45.23 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.15 Total: -2.66 kcal Total: -67.67 2.81 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404182313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.719 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds