Wall clock time and date at job start Tue Mar 31 2020 14:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48493 * 109.47312 * 269.99387 * 3 2 1 5 5 H 1.48508 * 109.47266 * 29.99284 * 3 2 1 6 6 H 1.48505 * 109.47500 * 149.99298 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00544 * 197.70790 * 7 2 1 9 9 C 1.41403 * 119.99783 * 17.70402 * 7 2 1 10 10 C 1.40711 * 120.24688 * 204.27324 * 9 7 2 11 11 C 1.37611 * 119.74733 * 179.69822 * 10 9 7 12 12 C 1.38638 * 120.24993 * 0.28368 * 11 10 9 13 13 S 1.76195 * 119.75107 * 179.97438 * 12 11 10 14 14 O 1.42099 * 106.40177 * 203.53719 * 13 12 11 15 15 O 1.42094 * 106.40335 * 336.45842 * 13 12 11 16 16 N 1.65606 * 107.21599 * 89.99770 * 13 12 11 17 17 C 1.47343 * 121.36691 * 90.00143 * 16 13 12 18 18 C 1.53106 * 107.88808 * 118.16936 * 17 16 13 19 19 C 1.49971 * 110.40722 * 45.48043 * 18 17 16 20 20 C 1.29623 * 124.58634 * 341.00233 * 19 18 17 21 21 Cl 1.73597 * 118.18529 * 180.88050 * 20 19 18 22 22 C 1.47001 * 121.37263 * 269.71902 * 16 13 12 23 23 C 1.38637 * 120.49824 * 359.97438 * 12 11 10 24 24 C 1.37617 * 120.24838 * 0.02562 * 23 12 11 25 25 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.12533 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.87917 * 180.25117 * 11 10 9 28 28 H 1.08999 * 109.77251 * 237.76179 * 17 16 13 29 29 H 1.08995 * 109.77939 * 358.56735 * 17 16 13 30 30 H 1.09004 * 109.31236 * 165.76640 * 18 17 16 31 31 H 1.09002 * 109.30960 * 285.37874 * 18 17 16 32 32 H 1.07991 * 117.70728 * 161.02807 * 19 18 17 33 33 H 1.09005 * 109.51993 * 342.88007 * 22 16 13 34 34 H 1.08997 * 109.52670 * 103.06937 * 22 16 13 35 35 H 1.07997 * 119.87894 * 180.02562 * 23 12 11 36 36 H 1.07999 * 120.12966 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2340 0.2850 9 6 1.3512 -2.4077 -0.3713 10 6 1.8273 -3.6499 0.0871 11 6 1.1766 -4.8068 -0.2761 12 6 0.0594 -4.7520 -1.0952 13 16 -0.7634 -6.2414 -1.5526 14 8 -1.4576 -5.9616 -2.7605 15 8 0.1953 -7.2831 -1.4305 16 7 -1.9209 -6.5343 -0.4050 17 6 -3.2889 -6.0048 -0.5430 18 6 -4.2490 -7.1953 -0.6144 19 6 -3.9092 -8.2052 0.4410 20 6 -2.7678 -8.2759 1.0513 21 17 -2.5457 -9.5291 2.2319 22 6 -1.6274 -7.3383 0.7901 23 6 -0.4154 -3.5341 -1.5571 24 6 0.2196 -2.3645 -1.2066 25 1 -0.4850 0.8400 -0.0004 26 1 2.6976 -3.6950 0.7252 27 1 1.5378 -5.7611 0.0778 28 1 -3.5333 -5.3852 0.3199 29 1 -3.3655 -5.4140 -1.4557 30 1 -5.2699 -6.8447 -0.4625 31 1 -4.1707 -7.6631 -1.5958 32 1 -4.6684 -8.9240 0.7111 33 1 -0.7148 -7.9119 0.6282 34 1 -1.4975 -6.6801 1.6491 35 1 -1.2868 -3.5030 -2.1943 36 1 -0.1516 -1.4168 -1.5679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404516092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:56 Heat of formation + Delta-G solvation = -53.328473 kcal Electronic energy + Delta-G solvation = -23141.244576 eV Core-core repulsion = 19549.751530 eV Total energy + Delta-G solvation = -3591.493046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.63540 -37.61223 -36.66415 -36.40934 -35.21468 -34.08130 -32.45549 -30.96690 -30.29704 -29.50785 -25.86472 -25.04969 -23.58762 -21.53155 -21.17215 -19.39157 -17.83536 -17.67650 -17.42432 -16.57430 -15.88083 -15.63870 -15.43727 -14.74733 -14.45806 -14.16484 -13.88969 -13.44279 -13.26657 -12.91696 -12.70929 -12.44313 -12.24369 -12.14364 -11.88245 -11.77244 -11.66629 -11.50916 -11.35968 -11.30592 -11.24669 -10.95254 -10.92948 -10.74847 -10.43607 -9.80878 -9.66630 -9.55454 -8.99066 -8.83215 -7.99890 -7.74802 -7.18567 -4.84190 1.04486 1.79747 2.12388 2.21064 2.85475 2.87544 2.90468 2.90736 3.50501 3.63508 4.19263 4.46298 4.48018 4.88380 4.90394 5.04128 5.21397 5.33085 5.36021 5.41984 5.58092 5.67110 5.84607 6.01248 6.04313 6.06415 6.21082 6.42196 6.55131 6.64362 6.71609 6.92408 7.00787 7.29820 7.38386 7.58923 7.73212 7.92693 8.27779 8.47249 8.60840 9.72813 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.003309 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.418171 B = 8459.629976 C = 8619.553709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.237 4.237 11 C 0.001 3.999 12 C -0.787 4.787 13 S 2.693 3.307 14 O -0.977 6.977 15 O -0.980 6.980 16 N -1.005 6.005 17 C 0.118 3.882 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.077 4.077 21 Cl -0.090 7.090 22 C 0.161 3.839 23 C -0.016 4.016 24 C -0.182 4.182 25 H 0.289 0.711 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -7.775 2.665 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.258 4.258 11 C -0.019 4.019 12 C -0.883 4.883 13 S 2.794 3.206 14 O -0.968 6.968 15 O -0.971 6.971 16 N -0.840 5.840 17 C -0.007 4.007 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.105 4.105 21 Cl -0.062 7.062 22 C 0.035 3.965 23 C -0.036 4.036 24 C -0.202 4.202 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.636 -8.305 2.045 11.466 hybrid contribution 0.347 1.203 0.739 1.454 sum -7.289 -7.101 2.785 10.550 Atomic orbital electron populations 1.69810 1.07930 1.30416 1.30564 1.26140 0.94909 1.02168 0.91789 0.86130 0.80515 0.79406 0.79831 1.18755 1.19842 1.18160 1.19979 0.98479 0.91149 1.36487 0.89359 1.17863 0.90072 0.92146 0.86364 1.21053 1.04302 0.92690 1.07769 1.20163 0.92189 0.97293 0.92265 1.29160 1.16182 1.15804 1.27170 1.01337 0.72160 0.74534 0.72532 1.93477 1.74283 1.86567 1.42456 1.93471 1.60622 1.56493 1.86468 1.58247 1.23612 1.64701 1.37410 1.21472 0.80304 0.95215 1.03728 1.20822 1.00072 0.95048 0.97853 1.22073 0.96004 1.00036 0.97213 1.22555 0.98259 0.93895 0.95779 1.98367 1.97601 1.52080 1.58116 1.20087 0.95827 0.91740 0.88859 1.20237 0.96746 0.91656 0.94959 1.21336 0.99996 0.96842 1.02075 0.89943 0.88125 0.87781 0.90615 0.88198 0.89195 0.89542 0.86509 0.87247 0.89441 0.87934 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.73 10.95 55.55 0.61 -17.12 16 2 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 3 Si 0.92 16.70 29.59 -169.99 -5.03 11.67 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.43 -10.45 9.06 -37.74 -0.34 -10.79 16 8 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.14 3.47 5.57 -106.82 -0.60 2.87 16 10 C -0.24 -5.51 9.80 -38.88 -0.38 -5.90 16 11 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 12 C -0.79 -16.98 6.00 -39.29 -0.24 -17.22 16 13 S 2.69 51.32 5.75 -107.50 -0.62 50.70 16 14 O -0.98 -20.15 16.00 -57.17 -0.91 -21.07 16 15 O -0.98 -20.35 15.91 -57.17 -0.91 -21.26 16 16 N -1.00 -15.41 3.30 -115.00 -0.38 -15.79 16 17 C 0.12 1.51 6.49 -3.53 -0.02 1.49 16 18 C -0.10 -1.03 6.28 -28.18 -0.18 -1.21 16 19 C -0.13 -1.47 9.48 -35.99 -0.34 -1.81 16 20 C -0.08 -0.95 6.33 -36.01 -0.23 -1.18 16 21 Cl -0.09 -1.04 28.76 -51.86 -1.49 -2.53 16 22 C 0.16 2.23 6.50 -5.29 -0.03 2.19 16 23 C -0.02 -0.35 9.49 -39.66 -0.38 -0.73 16 24 C -0.18 -4.46 8.70 -38.87 -0.34 -4.80 16 25 H 0.29 6.00 8.30 -40.82 -0.34 5.66 16 26 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 27 H 0.10 2.04 7.60 -52.48 -0.40 1.64 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.29 7.12 -51.93 -0.37 0.92 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 1.08 7.95 -52.49 -0.42 0.67 16 33 H 0.11 1.57 6.97 -51.93 -0.36 1.21 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 36 H 0.12 3.03 6.16 -52.49 -0.32 2.70 16 LS Contribution 330.14 15.07 4.98 4.98 Total: -1.00 -28.40 330.14 -11.23 -39.63 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.93 Total: 6.71 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: -3.54 Total: -35.89 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.23 Total: -32.92 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.82 Total: -42.33 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 51.32 SS G_CDS: -0.62 Total: 50.70 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.49 Total: -2.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.40 -11.23 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404516092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.703 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds