Wall clock time and date at job start Tue Mar 31 2020 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48493 * 109.47312 * 269.99387 * 3 2 1 5 5 H 1.48508 * 109.47266 * 29.99284 * 3 2 1 6 6 H 1.48505 * 109.47500 * 149.99298 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00544 * 197.70790 * 7 2 1 9 9 C 1.41403 * 119.99783 * 17.70402 * 7 2 1 10 10 C 1.40711 * 120.24688 * 204.27324 * 9 7 2 11 11 C 1.37611 * 119.74733 * 179.69822 * 10 9 7 12 12 C 1.38638 * 120.24993 * 0.28368 * 11 10 9 13 13 S 1.76195 * 119.75107 * 179.97438 * 12 11 10 14 14 O 1.42099 * 106.40177 * 203.53719 * 13 12 11 15 15 O 1.42094 * 106.40335 * 336.45842 * 13 12 11 16 16 N 1.65606 * 107.21599 * 89.99770 * 13 12 11 17 17 C 1.47343 * 121.36691 * 90.00143 * 16 13 12 18 18 C 1.53106 * 107.88808 * 118.16936 * 17 16 13 19 19 C 1.49971 * 110.40722 * 45.48043 * 18 17 16 20 20 C 1.29623 * 124.58634 * 341.00233 * 19 18 17 21 21 Cl 1.73597 * 118.18529 * 180.88050 * 20 19 18 22 22 C 1.47001 * 121.37263 * 269.71902 * 16 13 12 23 23 C 1.38637 * 120.49824 * 359.97438 * 12 11 10 24 24 C 1.37617 * 120.24838 * 0.02562 * 23 12 11 25 25 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.12533 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.87917 * 180.25117 * 11 10 9 28 28 H 1.08999 * 109.77251 * 237.76179 * 17 16 13 29 29 H 1.08995 * 109.77939 * 358.56735 * 17 16 13 30 30 H 1.09004 * 109.31236 * 165.76640 * 18 17 16 31 31 H 1.09002 * 109.30960 * 285.37874 * 18 17 16 32 32 H 1.07991 * 117.70728 * 161.02807 * 19 18 17 33 33 H 1.09005 * 109.51993 * 342.88007 * 22 16 13 34 34 H 1.08997 * 109.52670 * 103.06937 * 22 16 13 35 35 H 1.07997 * 119.87894 * 180.02562 * 23 12 11 36 36 H 1.07999 * 120.12966 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0463 -1.4000 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4402 0.7002 7 6 2.0080 -1.2119 0.0005 8 1 3.0496 -1.2340 0.2850 9 6 1.3512 -2.4077 -0.3713 10 6 1.8273 -3.6499 0.0871 11 6 1.1766 -4.8068 -0.2761 12 6 0.0594 -4.7520 -1.0952 13 16 -0.7634 -6.2414 -1.5526 14 8 -1.4576 -5.9616 -2.7605 15 8 0.1953 -7.2831 -1.4305 16 7 -1.9209 -6.5343 -0.4050 17 6 -3.2889 -6.0048 -0.5430 18 6 -4.2490 -7.1953 -0.6144 19 6 -3.9092 -8.2052 0.4410 20 6 -2.7678 -8.2759 1.0513 21 17 -2.5457 -9.5291 2.2319 22 6 -1.6274 -7.3383 0.7901 23 6 -0.4154 -3.5341 -1.5571 24 6 0.2196 -2.3645 -1.2066 25 1 -0.4850 0.8400 -0.0004 26 1 2.6976 -3.6950 0.7252 27 1 1.5378 -5.7611 0.0778 28 1 -3.5333 -5.3852 0.3199 29 1 -3.3655 -5.4140 -1.4557 30 1 -5.2699 -6.8447 -0.4625 31 1 -4.1707 -7.6631 -1.5958 32 1 -4.6684 -8.9240 0.7111 33 1 -0.7148 -7.9119 0.6282 34 1 -1.4975 -6.6801 1.6491 35 1 -1.2868 -3.5030 -2.1943 36 1 -0.1516 -1.4168 -1.5679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404516092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:55 Heat of formation + Delta-G solvation = -69.210598 kcal Electronic energy + Delta-G solvation = -23141.933277 eV Core-core repulsion = 19549.751530 eV Total energy + Delta-G solvation = -3592.181746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.64012 -39.38534 -38.26445 -37.34917 -36.83804 -35.81000 -33.50047 -32.07130 -31.93593 -31.29672 -27.62787 -26.12427 -24.57396 -23.28735 -22.94813 -20.64324 -19.43816 -19.22985 -18.61935 -18.10785 -17.25962 -17.07868 -16.60886 -15.92942 -15.84558 -15.68581 -15.18107 -14.97481 -14.83235 -14.13741 -13.99076 -13.88478 -13.70352 -13.57655 -13.33789 -13.14685 -13.04586 -12.92214 -12.89777 -12.85661 -12.60670 -12.44025 -11.98693 -11.86536 -11.79109 -11.55901 -11.34808 -11.23729 -10.11041 -9.83720 -9.78223 -9.56007 -8.87904 -6.65529 -0.45872 0.47197 0.91148 1.05314 1.19865 1.36315 1.43766 1.50970 2.10832 2.12589 2.51056 2.89436 3.39116 3.49533 3.57750 3.98662 4.02076 4.22944 4.29089 4.31047 4.35797 4.45932 4.55452 4.80251 4.86146 4.91422 4.93294 5.07240 5.10425 5.23189 5.29218 5.47659 5.52417 5.54199 5.59373 5.76769 5.93076 6.14827 6.48382 6.67726 6.80276 8.07193 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019946 B = 0.003309 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.418171 B = 8459.629976 C = 8619.553709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.111 3.889 10 C -0.257 4.257 11 C -0.003 4.003 12 C -0.797 4.797 13 S 2.723 3.277 14 O -0.992 6.992 15 O -0.996 6.996 16 N -1.001 6.001 17 C 0.105 3.895 18 C -0.098 4.098 19 C -0.119 4.119 20 C -0.098 4.098 21 Cl -0.086 7.086 22 C 0.155 3.845 23 C -0.019 4.019 24 C -0.207 4.207 25 H 0.299 0.701 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 -8.171 3.058 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.178 1.178 7 C -0.492 4.492 8 H 0.109 0.891 9 C 0.108 3.892 10 C -0.277 4.277 11 C -0.023 4.023 12 C -0.890 4.890 13 S 2.821 3.179 14 O -0.982 6.982 15 O -0.987 6.987 16 N -0.838 5.838 17 C -0.019 4.019 18 C -0.136 4.136 19 C -0.139 4.139 20 C -0.126 4.126 21 Cl -0.057 7.057 22 C 0.030 3.970 23 C -0.039 4.039 24 C -0.227 4.227 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.143 0.857 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.877 -8.683 2.444 12.656 hybrid contribution 0.613 1.186 0.621 1.473 sum -8.264 -7.497 3.065 11.571 Atomic orbital electron populations 1.69833 1.09273 1.31883 1.30633 1.26975 0.95601 1.05068 0.90728 0.85057 0.79165 0.74948 0.79832 1.18518 1.18703 1.17799 1.20251 0.98894 0.92119 1.37981 0.89110 1.18208 0.90726 0.93240 0.87050 1.21277 1.05080 0.92844 1.08486 1.20451 0.92044 0.97802 0.91971 1.29665 1.16469 1.16891 1.26018 1.00416 0.71918 0.73144 0.72399 1.93452 1.74452 1.86557 1.43789 1.93445 1.61939 1.56437 1.86872 1.57884 1.23826 1.64759 1.37372 1.21803 0.79217 0.96655 1.04209 1.20903 1.01081 0.93851 0.97782 1.22347 0.95764 0.99781 0.95960 1.22383 0.98242 0.94597 0.97343 1.98367 1.97641 1.51736 1.57997 1.20187 0.96489 0.92116 0.88218 1.20453 0.96971 0.91654 0.94848 1.21359 1.00913 0.97140 1.03277 0.88976 0.87089 0.85724 0.89341 0.88568 0.85732 0.89355 0.84340 0.88103 0.88750 0.86475 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.39 10.95 21.83 0.24 -37.15 16 2 C 0.04 1.64 5.14 85.26 0.44 2.08 16 3 Si 0.99 34.04 29.59 68.60 2.03 36.07 16 4 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 7 C -0.47 -23.05 9.06 23.46 0.21 -22.84 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.24 16 9 C 0.11 5.72 5.57 -21.29 -0.12 5.60 16 10 C -0.26 -12.18 9.80 22.73 0.22 -11.96 16 11 C 0.00 -0.13 9.49 22.22 0.21 0.08 16 12 C -0.80 -34.46 6.00 22.46 0.13 -34.33 16 13 S 2.72 101.59 5.75 -56.49 -0.32 101.26 16 14 O -0.99 -39.99 16.00 -128.00 -2.05 -42.04 16 15 O -1.00 -40.58 15.91 -128.00 -2.04 -42.62 16 16 N -1.00 -29.26 3.30 -517.75 -1.71 -30.96 16 17 C 0.11 2.47 6.49 86.25 0.56 3.03 16 18 C -0.10 -1.70 6.28 29.66 0.19 -1.52 16 19 C -0.12 -2.23 9.48 26.83 0.25 -1.98 16 20 C -0.10 -2.20 6.33 26.82 0.17 -2.03 16 21 Cl -0.09 -1.83 28.76 -2.72 -0.08 -1.91 16 22 C 0.16 4.09 6.50 85.30 0.55 4.65 16 23 C -0.02 -0.88 9.49 22.22 0.21 -0.67 16 24 C -0.21 -10.45 8.70 22.73 0.20 -10.25 16 25 H 0.30 12.47 8.30 -92.71 -0.77 11.70 16 26 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.12 4.85 7.60 -2.91 -0.02 4.82 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.33 7.12 -2.39 -0.02 2.31 16 30 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.14 2.02 7.95 -2.92 -0.02 2.00 16 33 H 0.10 2.81 6.97 -2.38 -0.02 2.79 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.12 4.88 7.60 -2.91 -0.02 4.86 16 36 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -61.28 330.14 0.42 -60.86 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 1.11 Total: 26.63 kcal Atomic # 6 Polarization: -73.38 SS G_CDS: 3.23 Total: -70.14 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -1.47 Total: -68.12 kcal Atomic # 8 Polarization: -80.58 SS G_CDS: -4.08 Total: -84.66 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Atomic # 16 Polarization: 101.59 SS G_CDS: -0.32 Total: 101.26 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -61.28 0.42 -60.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404516092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.347 kcal (2) G-P(sol) polarization free energy of solvation -61.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds