Wall clock time and date at job start Tue Mar 31 2020 15:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48502 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47372 * 300.00140 * 3 2 1 6 6 H 1.48499 * 109.47363 * 60.00322 * 3 2 1 7 7 C 1.37871 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47472 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47222 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99930 * 5.39578 * 11 10 9 13 13 N 1.34777 * 120.00107 * 185.38924 * 11 10 9 14 14 C 1.46937 * 120.55864 * 325.18012 * 13 11 10 15 15 C 1.53428 * 107.78204 * 224.62307 * 14 13 11 16 16 C 1.52851 * 108.86273 * 296.79290 * 15 14 13 17 17 C 1.50585 * 110.51153 * 51.40970 * 16 15 14 18 18 C 1.38653 * 118.92520 * 159.50580 * 17 16 15 19 19 Cl 1.73594 * 119.85144 * 359.59114 * 18 17 16 20 20 C 1.38228 * 120.29761 * 179.61589 * 18 17 16 21 21 C 1.38289 * 120.15210 * 359.97438 * 20 18 17 22 22 C 1.38133 * 119.90246 * 0.07817 * 21 20 18 23 23 Cl 1.73600 * 119.98047 * 179.97438 * 22 21 20 24 24 C 1.38506 * 121.51066 * 339.25561 * 17 16 15 25 25 H 0.97001 * 120.00203 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46890 * 59.99505 * 9 7 2 27 27 H 1.09001 * 109.46723 * 299.99666 * 9 7 2 28 28 H 1.09010 * 109.46696 * 59.99616 * 10 9 7 29 29 H 1.09001 * 109.47286 * 300.00458 * 10 9 7 30 30 H 1.09007 * 109.79474 * 344.19495 * 14 13 11 31 31 H 1.08997 * 109.79429 * 104.99782 * 14 13 11 32 32 H 1.09007 * 109.56756 * 56.60262 * 15 14 13 33 33 H 1.08998 * 109.57301 * 176.85137 * 15 14 13 34 34 H 1.09000 * 109.26322 * 291.14274 * 16 15 14 35 35 H 1.09005 * 109.26820 * 171.67749 * 16 15 14 36 36 H 1.08004 * 119.92250 * 180.02562 * 20 18 17 37 37 H 1.07999 * 120.05087 * 179.80444 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4919 -4.9671 -0.0033 12 8 0.2831 -4.9694 -0.1016 13 7 2.1614 -6.1318 0.1054 14 6 3.4886 -6.2904 -0.5049 15 6 3.5190 -7.6509 -1.2134 16 6 3.3462 -8.7551 -0.1707 17 6 2.1409 -8.4840 0.6902 18 6 1.5643 -9.5350 1.3869 19 17 2.2294 -11.1323 1.2472 20 6 0.4618 -9.3167 2.1917 21 6 -0.0731 -8.0467 2.3074 22 6 0.4949 -6.9945 1.6158 23 17 -0.1754 -5.3996 1.7591 24 6 1.6032 -7.2125 0.8033 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8720 -3.6050 0.8874 29 1 2.8720 -3.6035 -0.8926 30 1 3.6598 -5.4933 -1.2285 31 1 4.2564 -6.2585 0.2680 32 1 2.7067 -7.7031 -1.9385 33 1 4.4735 -7.7750 -1.7248 34 1 4.2353 -8.7979 0.4583 35 1 3.2185 -9.7116 -0.6776 36 1 0.0178 -10.1397 2.7320 37 1 -0.9364 -7.8786 2.9342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411080346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:30 Heat of formation + Delta-G solvation = -6.838162 kcal Electronic energy + Delta-G solvation = -23357.448599 eV Core-core repulsion = 19765.927818 eV Total energy + Delta-G solvation = -3591.520781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18742 -40.05274 -38.03949 -37.74396 -36.87798 -35.61353 -34.53568 -33.10293 -31.69648 -30.66950 -27.98593 -26.63104 -24.82984 -24.37823 -23.10184 -21.39976 -20.20253 -19.01721 -18.39159 -18.24848 -17.44048 -16.91282 -16.53444 -16.38105 -16.16272 -15.90737 -15.11126 -14.91017 -14.68562 -14.54963 -14.48047 -14.19307 -13.82986 -13.37405 -13.25804 -13.16555 -12.91072 -12.64398 -12.47698 -12.44484 -12.09044 -11.97230 -11.84724 -11.67537 -11.58973 -11.36004 -11.21611 -10.92361 -10.57521 -9.95820 -9.38063 -8.77601 -8.18996 -6.32265 -0.12458 0.09308 0.96281 1.11275 1.41192 1.42008 1.55299 1.58899 1.88872 2.39941 2.41943 3.14456 3.41591 3.66047 3.78774 3.95990 4.00434 4.07949 4.15581 4.27838 4.44637 4.49661 4.53889 4.63011 4.72954 4.79616 4.92821 4.97313 5.03096 5.09129 5.14785 5.25995 5.36398 5.48794 5.62871 5.76216 5.84387 6.17350 6.23959 6.85070 7.00851 7.37767 8.93438 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.003393 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.600800 B = 8250.994953 C = 9141.812723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.451 3.549 12 O -0.475 6.475 13 N -0.570 5.570 14 C 0.098 3.902 15 C -0.128 4.128 16 C -0.075 4.075 17 C -0.111 4.111 18 C -0.008 4.008 19 Cl -0.043 7.043 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.117 4.117 23 Cl -0.012 7.012 24 C 0.184 3.816 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -23.839 2.352 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.010 3.990 10 C -0.145 4.145 11 C 0.242 3.758 12 O -0.348 6.348 13 N -0.293 5.293 14 C -0.022 4.022 15 C -0.166 4.166 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.036 4.036 19 Cl -0.014 7.014 20 C -0.148 4.148 21 C -0.095 4.095 22 C -0.148 4.148 23 Cl 0.019 6.981 24 C 0.084 3.916 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.185 0.815 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.662 -23.579 2.211 25.216 hybrid contribution -0.534 1.267 0.162 1.384 sum 8.128 -22.312 2.373 23.864 Atomic orbital electron populations 1.70170 1.08199 1.27647 1.51607 1.26077 0.95693 1.03753 0.94703 0.85324 0.79397 0.78331 0.77528 1.17624 1.20596 1.20762 1.21721 0.93921 0.91660 1.50549 0.90859 1.18649 0.93537 0.92065 0.94718 1.21539 0.99186 0.89845 1.03902 1.21006 0.87097 0.85785 0.81900 1.90884 1.17512 1.88645 1.37776 1.45616 1.20439 1.09872 1.53340 1.22287 0.81309 1.00143 0.98423 1.21895 1.04795 0.92373 0.97496 1.20555 0.94108 1.00279 0.96240 1.19370 1.01403 0.88647 1.02064 1.20734 0.96546 0.86582 0.99744 1.98364 1.84976 1.21233 1.96838 1.21073 0.96064 0.97187 1.00457 1.21062 0.99992 0.90478 0.97992 1.21327 0.99271 0.89336 1.04894 1.98487 1.85812 1.22254 1.91591 1.17318 0.93420 0.88235 0.92604 0.92934 0.99780 0.99715 0.89315 0.88018 0.88102 0.88727 0.92378 0.85855 0.87961 0.88415 0.81465 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.14 13.29 21.44 0.28 -58.85 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.05 2.64 4.28 29.85 0.13 2.77 16 10 C -0.10 -4.29 4.93 29.85 0.15 -4.14 16 11 C 0.45 17.71 5.47 87.66 0.48 18.19 16 12 O -0.48 -22.20 11.25 -3.04 -0.03 -22.24 16 13 N -0.57 -17.30 2.97 -629.23 -1.87 -19.17 16 14 C 0.10 1.98 6.05 86.44 0.52 2.51 16 15 C -0.13 -1.93 6.11 30.69 0.19 -1.74 16 16 C -0.08 -1.15 5.19 29.76 0.15 -0.99 16 17 C -0.11 -2.46 5.76 -19.74 -0.11 -2.58 16 18 C -0.01 -0.17 6.31 22.37 0.14 -0.03 16 19 Cl -0.04 -0.67 27.34 -2.72 -0.07 -0.74 16 20 C -0.13 -2.48 9.81 22.28 0.22 -2.26 16 21 C -0.08 -1.84 9.83 22.26 0.22 -1.63 16 22 C -0.12 -3.72 6.11 22.46 0.14 -3.58 16 23 Cl -0.01 -0.48 22.17 -2.72 -0.06 -0.54 16 24 C 0.18 5.39 6.25 38.08 0.24 5.63 16 25 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 26 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 29 H 0.10 3.63 7.24 -2.39 -0.02 3.61 16 30 H 0.10 1.92 6.87 -2.38 -0.02 1.90 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.28 7.19 -2.38 -0.02 1.27 16 36 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -74.78 328.89 4.52 -70.26 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.09 Total: 3.05 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 3.15 Total: -18.12 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.58 Total: -78.02 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.03 Total: -22.24 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.13 Total: -1.28 kcal Total: -74.78 4.52 -70.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411080346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.422 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds