Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48495 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47079 * 300.00659 * 3 2 1 6 6 H 1.48501 * 109.46726 * 60.00387 * 3 2 1 7 7 C 1.37876 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46786 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47115 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99642 * 5.45431 * 11 10 9 13 13 N 1.34772 * 120.00264 * 185.45627 * 11 10 9 14 14 C 1.46913 * 120.47214 * 353.75124 * 13 11 10 15 15 C 1.53429 * 107.78421 * 224.56742 * 14 13 11 16 16 C 1.52853 * 108.96126 * 296.92834 * 15 14 13 17 17 C 1.50591 * 110.51206 * 51.28964 * 16 15 14 18 18 C 1.38641 * 118.91477 * 159.50546 * 17 16 15 19 19 Cl 1.73593 * 119.85387 * 359.81651 * 18 17 16 20 20 C 1.38222 * 120.29384 * 179.90993 * 18 17 16 21 21 C 1.38399 * 120.12403 * 359.92563 * 20 18 17 22 22 Cl 1.73602 * 120.05387 * 180.12042 * 21 20 18 23 23 C 1.38155 * 119.89296 * 0.09836 * 21 20 18 24 24 C 1.38556 * 121.51106 * 339.48103 * 17 16 15 25 25 H 0.97001 * 120.00590 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46864 * 60.00229 * 9 7 2 27 27 H 1.08998 * 109.47093 * 300.00221 * 9 7 2 28 28 H 1.08996 * 109.47605 * 60.00226 * 10 9 7 29 29 H 1.09004 * 109.47361 * 300.00106 * 10 9 7 30 30 H 1.09007 * 109.69548 * 105.05189 * 14 13 11 31 31 H 1.09003 * 109.89752 * 344.19446 * 14 13 11 32 32 H 1.09003 * 109.57332 * 177.05504 * 15 14 13 33 33 H 1.08993 * 109.57650 * 56.80282 * 15 14 13 34 34 H 1.09005 * 109.26569 * 171.55797 * 16 15 14 35 35 H 1.09001 * 109.26440 * 291.01951 * 16 15 14 36 36 H 1.07999 * 119.93365 * 179.97438 * 20 18 17 37 37 H 1.08009 * 119.97116 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2832 -4.9695 -0.1014 13 7 2.1611 -6.1317 0.1097 14 6 3.6300 -6.1512 0.0942 15 6 4.0738 -7.2968 -0.8248 16 6 3.5907 -8.6219 -0.2355 17 6 2.1191 -8.5550 0.0770 18 6 1.4066 -9.7374 0.2052 19 17 2.2150 -11.2599 0.0002 20 6 0.0551 -9.7094 0.4934 21 6 -0.5951 -8.4987 0.6575 22 17 -2.2920 -8.4656 1.0227 23 6 0.1085 -7.3165 0.5308 24 6 1.4674 -7.3430 0.2385 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8905 30 1 4.0059 -6.3206 1.1033 31 1 4.0096 -5.2034 -0.2877 32 1 5.1613 -7.3051 -0.8990 33 1 3.6413 -7.1587 -1.8157 34 1 3.7699 -9.4217 -0.9540 35 1 4.1438 -8.8311 0.6802 36 1 -0.4943 -10.6340 0.5916 37 1 -0.3978 -6.3710 0.6582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411105094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = -27.517714 kcal Electronic energy + Delta-G solvation = -22840.377655 eV Core-core repulsion = 19247.960142 eV Total energy + Delta-G solvation = -3592.417514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19832 -38.83315 -37.12669 -36.86236 -35.91259 -33.71312 -33.51312 -31.55384 -30.46450 -29.84677 -26.34511 -25.56991 -23.65444 -23.32716 -21.71734 -20.37714 -19.06133 -17.54770 -17.29445 -16.39924 -16.17967 -15.85094 -15.25490 -15.06876 -14.53821 -14.47227 -14.15673 -13.88965 -13.52433 -13.43180 -13.17690 -12.64360 -12.41602 -12.28231 -12.22216 -11.95783 -11.60810 -11.39849 -11.12628 -11.09251 -11.04985 -11.00553 -10.94581 -10.64133 -10.10560 -10.01859 -9.71998 -9.25022 -9.11158 -8.68754 -8.40654 -8.02537 -6.03727 -4.08858 0.84984 0.97595 1.63509 2.18631 2.75956 2.81328 3.28096 3.35699 3.38221 3.41614 4.32812 4.40291 4.46203 4.66042 4.71867 4.85924 4.94859 5.03428 5.19771 5.31760 5.34256 5.34818 5.37618 5.52226 5.66306 5.84859 5.89785 5.93543 5.99042 6.02614 6.04874 6.22193 6.68351 6.84542 7.31667 7.64237 7.72330 7.96088 8.22086 8.36868 8.98652 9.55488 11.07113 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.003196 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.441803 B = 8758.355712 C =10338.584925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.126 4.126 11 C 0.513 3.487 12 O -0.502 6.502 13 N -0.562 5.562 14 C 0.100 3.900 15 C -0.136 4.136 16 C -0.078 4.078 17 C -0.114 4.114 18 C -0.005 4.005 19 Cl -0.061 7.061 20 C -0.133 4.133 21 C -0.004 4.004 22 Cl -0.057 7.057 23 C -0.142 4.142 24 C 0.194 3.806 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 -21.882 0.630 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.166 4.166 11 C 0.305 3.695 12 O -0.376 6.376 13 N -0.286 5.286 14 C -0.022 4.022 15 C -0.174 4.174 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.032 4.032 19 Cl -0.032 7.032 20 C -0.154 4.154 21 C -0.032 4.032 22 Cl -0.028 7.028 23 C -0.163 4.163 24 C 0.097 3.903 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.434 -21.755 0.574 22.694 hybrid contribution 0.338 0.620 0.031 0.707 sum 6.772 -21.136 0.604 22.202 Atomic orbital electron populations 1.69994 1.06067 1.26642 1.49902 1.25019 0.94829 0.99293 0.95154 0.86528 0.79986 0.83755 0.77654 1.19711 1.20975 1.20972 1.21192 0.92955 0.90797 1.51774 0.92464 1.18953 0.93124 0.89270 0.98849 1.21979 1.00934 0.90758 1.02898 1.22004 0.88512 0.85117 0.73845 1.90488 1.14681 1.86219 1.46165 1.46166 1.07658 1.04609 1.70190 1.22074 0.77976 1.01157 1.01002 1.21898 1.02010 0.93822 0.99679 1.20459 0.90327 0.98710 1.02026 1.19278 0.97160 0.89978 1.05365 1.20251 0.92136 0.86255 1.04601 1.98355 1.79519 1.29655 1.95674 1.20703 0.92669 0.97736 1.04282 1.20526 0.86109 0.93868 1.02694 1.98380 1.12664 1.98862 1.92872 1.22307 0.93265 1.00630 1.00072 1.17377 0.90971 0.85272 0.96654 0.92891 0.95467 0.95765 0.89667 0.89488 0.90340 0.87754 0.89239 0.90640 0.89590 0.89885 0.84204 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.90 4.28 -27.88 -0.12 0.78 16 10 C -0.13 -2.34 4.06 -27.89 -0.11 -2.46 16 11 C 0.51 9.27 7.55 -10.99 -0.08 9.19 16 12 O -0.50 -10.82 12.65 5.55 0.07 -10.75 16 13 N -0.56 -8.06 2.97 -112.87 -0.34 -8.39 16 14 C 0.10 1.00 6.17 -3.60 -0.02 0.98 16 15 C -0.14 -1.12 6.10 -26.58 -0.16 -1.28 16 16 C -0.08 -0.69 5.19 -28.01 -0.15 -0.84 16 17 C -0.11 -1.35 5.76 -104.41 -0.60 -1.96 16 18 C 0.00 -0.06 6.31 -39.44 -0.25 -0.31 16 19 Cl -0.06 -0.58 27.34 -51.86 -1.42 -2.00 16 20 C -0.13 -1.58 9.60 -39.53 -0.38 -1.96 16 21 C 0.00 -0.06 6.32 -39.55 -0.25 -0.31 16 22 Cl -0.06 -0.74 28.96 -51.86 -1.50 -2.25 16 23 C -0.14 -2.24 8.66 -39.32 -0.34 -2.58 16 24 C 0.19 2.80 6.31 -83.63 -0.53 2.27 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 27 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 29 H 0.09 1.45 7.59 -51.93 -0.39 1.06 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.96 6.26 -51.93 -0.33 0.64 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.70 7.20 -51.93 -0.37 0.32 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.19 3.42 4.97 -53.66 -0.27 3.15 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -31.28 333.88 -10.12 -41.39 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.27 Total: -1.64 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.40 Total: -11.54 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.40 Total: -34.25 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -2.92 Total: -4.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.28 -10.12 -41.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411105094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.876 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds