Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99834 * 2 1 4 4 H 1.48495 * 109.46676 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47079 * 300.00659 * 3 2 1 6 6 H 1.48501 * 109.46726 * 60.00387 * 3 2 1 7 7 C 1.37876 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99879 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46786 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47115 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99642 * 5.45431 * 11 10 9 13 13 N 1.34772 * 120.00264 * 185.45627 * 11 10 9 14 14 C 1.46913 * 120.47214 * 353.75124 * 13 11 10 15 15 C 1.53429 * 107.78421 * 224.56742 * 14 13 11 16 16 C 1.52853 * 108.96126 * 296.92834 * 15 14 13 17 17 C 1.50591 * 110.51206 * 51.28964 * 16 15 14 18 18 C 1.38641 * 118.91477 * 159.50546 * 17 16 15 19 19 Cl 1.73593 * 119.85387 * 359.81651 * 18 17 16 20 20 C 1.38222 * 120.29384 * 179.90993 * 18 17 16 21 21 C 1.38399 * 120.12403 * 359.92563 * 20 18 17 22 22 Cl 1.73602 * 120.05387 * 180.12042 * 21 20 18 23 23 C 1.38155 * 119.89296 * 0.09836 * 21 20 18 24 24 C 1.38556 * 121.51106 * 339.48103 * 17 16 15 25 25 H 0.97001 * 120.00590 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46864 * 60.00229 * 9 7 2 27 27 H 1.08998 * 109.47093 * 300.00221 * 9 7 2 28 28 H 1.08996 * 109.47605 * 60.00226 * 10 9 7 29 29 H 1.09004 * 109.47361 * 300.00106 * 10 9 7 30 30 H 1.09007 * 109.69548 * 105.05189 * 14 13 11 31 31 H 1.09003 * 109.89752 * 344.19446 * 14 13 11 32 32 H 1.09003 * 109.57332 * 177.05504 * 15 14 13 33 33 H 1.08993 * 109.57650 * 56.80282 * 15 14 13 34 34 H 1.09005 * 109.26569 * 171.55797 * 16 15 14 35 35 H 1.09001 * 109.26440 * 291.01951 * 16 15 14 36 36 H 1.07999 * 119.93365 * 179.97438 * 20 18 17 37 37 H 1.08009 * 119.97116 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2832 -4.9695 -0.1014 13 7 2.1611 -6.1317 0.1097 14 6 3.6300 -6.1512 0.0942 15 6 4.0738 -7.2968 -0.8248 16 6 3.5907 -8.6219 -0.2355 17 6 2.1191 -8.5550 0.0770 18 6 1.4066 -9.7374 0.2052 19 17 2.2150 -11.2599 0.0002 20 6 0.0551 -9.7094 0.4934 21 6 -0.5951 -8.4987 0.6575 22 17 -2.2920 -8.4656 1.0227 23 6 0.1085 -7.3165 0.5308 24 6 1.4674 -7.3430 0.2385 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8905 30 1 4.0059 -6.3206 1.1033 31 1 4.0096 -5.2034 -0.2877 32 1 5.1613 -7.3051 -0.8990 33 1 3.6413 -7.1587 -1.8157 34 1 3.7699 -9.4217 -0.9540 35 1 4.1438 -8.8311 0.6802 36 1 -0.4943 -10.6340 0.5916 37 1 -0.3978 -6.3710 0.6582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411105094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = -44.310939 kcal Electronic energy + Delta-G solvation = -22841.105864 eV Core-core repulsion = 19247.960142 eV Total energy + Delta-G solvation = -3593.145723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31360 -40.03810 -38.17058 -37.77650 -36.90418 -35.64792 -34.53591 -33.26475 -31.54085 -30.96724 -27.97942 -26.68406 -24.94023 -24.28203 -23.29563 -21.49151 -20.20713 -18.98834 -18.46553 -17.91909 -17.36902 -17.04938 -16.49374 -16.39705 -16.07369 -15.55287 -15.19413 -14.90400 -14.70354 -14.59260 -14.21314 -14.09213 -13.92123 -13.39395 -13.37179 -13.10036 -12.96745 -12.82989 -12.48411 -12.45019 -12.11337 -12.04495 -11.92849 -11.83657 -11.80567 -11.55886 -11.26940 -11.02686 -10.57781 -10.54295 -9.68483 -9.09576 -8.17916 -6.31646 -0.16008 -0.08018 0.67641 1.19653 1.43697 1.44310 1.45161 1.57619 1.70797 2.36302 2.43181 3.16095 3.47350 3.60211 3.64778 3.88772 3.96620 4.00166 4.06515 4.25081 4.39160 4.45590 4.47330 4.56766 4.66915 4.79772 4.86752 4.96087 5.04217 5.05030 5.10600 5.18665 5.26309 5.49773 5.60068 5.73225 5.84345 6.13550 6.16977 6.85937 6.98923 7.38932 8.94824 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.003196 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.441803 B = 8758.355712 C =10338.584925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.250 1.250 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.041 3.959 10 C -0.111 4.111 11 C 0.510 3.490 12 O -0.552 6.552 13 N -0.554 5.554 14 C 0.086 3.914 15 C -0.129 4.129 16 C -0.080 4.080 17 C -0.102 4.102 18 C -0.007 4.007 19 Cl -0.034 7.034 20 C -0.125 4.125 21 C -0.014 4.014 22 Cl -0.060 7.060 23 C -0.168 4.168 24 C 0.173 3.827 25 H 0.262 0.738 26 H -0.015 1.015 27 H -0.017 1.017 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.161 0.839 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 -23.523 0.515 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.173 1.173 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.098 0.902 9 C 0.003 3.997 10 C -0.151 4.151 11 C 0.302 3.698 12 O -0.430 6.430 13 N -0.277 5.277 14 C -0.034 4.034 15 C -0.167 4.167 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.034 4.034 19 Cl -0.005 7.005 20 C -0.145 4.145 21 C -0.042 4.042 22 Cl -0.031 7.031 23 C -0.189 4.189 24 C 0.076 3.924 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.001 0.999 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.178 0.822 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.440 -23.448 0.462 25.672 hybrid contribution -0.893 0.967 0.075 1.318 sum 9.548 -22.481 0.537 24.431 Atomic orbital electron populations 1.70178 1.08327 1.27707 1.51560 1.26115 0.95666 1.03915 0.94723 0.85301 0.79509 0.78228 0.77380 1.17282 1.20891 1.20874 1.21714 0.94114 0.91313 1.50555 0.90221 1.18720 0.93695 0.92339 0.94905 1.21712 0.99378 0.88622 1.05358 1.21824 0.87838 0.86259 0.73843 1.90506 1.16721 1.87090 1.48678 1.46066 1.09366 1.03441 1.68850 1.22535 0.75046 1.02814 1.02959 1.21917 1.04109 0.92374 0.98253 1.20633 0.87974 0.99609 1.03410 1.19616 0.98908 0.88831 1.03212 1.20374 0.92064 0.87344 1.03665 1.98368 1.78909 1.27783 1.95446 1.20931 0.93144 0.97571 1.02850 1.20564 0.86079 0.94079 1.03471 1.98371 1.12891 1.98887 1.92937 1.22089 0.94545 1.00022 1.02266 1.17492 0.90664 0.86142 0.98061 0.92936 0.99694 0.99873 0.87041 0.86875 0.88293 0.86690 0.85507 0.91870 0.88239 0.87736 0.82154 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 2 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.45 9.11 25.60 0.23 -29.22 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.19 4.28 29.85 0.13 2.32 16 10 C -0.11 -4.15 4.06 29.85 0.12 -4.03 16 11 C 0.51 19.14 7.55 87.66 0.66 19.80 16 12 O -0.55 -25.93 12.65 -3.05 -0.04 -25.97 16 13 N -0.55 -15.63 2.97 -629.39 -1.87 -17.50 16 14 C 0.09 1.47 6.17 86.44 0.53 2.01 16 15 C -0.13 -1.61 6.10 30.69 0.19 -1.42 16 16 C -0.08 -1.09 5.19 29.76 0.15 -0.94 16 17 C -0.10 -2.21 5.76 -19.73 -0.11 -2.32 16 18 C -0.01 -0.14 6.31 22.36 0.14 0.00 16 19 Cl -0.03 -0.53 27.34 -2.72 -0.07 -0.61 16 20 C -0.12 -2.81 9.60 22.30 0.21 -2.60 16 21 C -0.01 -0.40 6.32 22.29 0.14 -0.26 16 22 Cl -0.06 -1.64 28.96 -2.72 -0.08 -1.72 16 23 C -0.17 -5.61 8.66 22.44 0.19 -5.42 16 24 C 0.17 4.96 6.31 38.07 0.24 5.20 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H -0.02 -0.94 8.04 -2.39 -0.02 -0.96 16 27 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.11 3.55 8.06 -2.39 -0.02 3.53 16 29 H 0.11 3.60 7.59 -2.38 -0.02 3.58 16 30 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.11 1.72 6.26 -2.39 -0.01 1.70 16 32 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.16 7.20 -2.38 -0.02 1.14 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.15 6.19 4.97 -21.50 -0.11 6.08 16 Total: -1.00 -73.69 333.88 4.56 -69.13 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.01 Total: 6.51 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 3.30 Total: -16.80 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.59 Total: -75.77 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.04 Total: -25.97 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.15 Total: -2.33 kcal Total: -73.69 4.56 -69.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411105094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.820 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds