Wall clock time and date at job start Tue Mar 31 2020 15:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99911 * 2 1 4 4 H 1.48500 * 109.46752 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46838 * 299.99642 * 3 2 1 6 6 H 1.48496 * 109.47502 * 59.99662 * 3 2 1 7 7 C 1.37875 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00347 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00025 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00214 * 5.01969 * 11 10 9 13 13 C 1.50697 * 120.00099 * 185.02988 * 11 10 9 14 14 C 1.50705 * 112.84905 * 305.27398 * 13 11 10 15 15 C 1.38327 * 120.01390 * 266.07854 * 14 13 11 16 16 Cl 1.73591 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.38354 * 119.98395 * 180.02562 * 15 14 13 18 18 C 1.38218 * 120.01645 * 359.97127 * 17 15 14 19 19 C 1.38220 * 120.02781 * 0.30206 * 18 17 15 20 20 C 1.38336 * 120.01041 * 86.10250 * 14 13 11 21 21 Cl 1.73596 * 120.00705 * 359.97059 * 20 14 13 22 22 C 1.53783 * 113.69305 * 76.54267 * 13 11 10 23 23 C 1.53777 * 87.08099 * 89.12812 * 22 13 11 24 24 C 1.53780 * 87.08137 * 25.43600 * 23 22 13 25 25 H 0.96998 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46954 * 59.99921 * 9 7 2 27 27 H 1.08998 * 109.46871 * 300.00171 * 9 7 2 28 28 H 0.97001 * 120.00240 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.99458 * 180.02562 * 17 15 14 30 30 H 1.08006 * 119.98804 * 180.02562 * 18 17 15 31 31 H 1.07996 * 120.00003 * 179.72004 * 19 18 17 32 32 H 1.09001 * 113.61701 * 203.67557 * 22 13 11 33 33 H 1.09002 * 113.61185 * 334.58402 * 22 13 11 34 34 H 1.09006 * 113.61607 * 270.88701 * 23 22 13 35 35 H 1.09004 * 113.61717 * 139.98116 * 23 22 13 36 36 H 1.09010 * 113.61191 * 220.02248 * 24 23 22 37 37 H 1.08992 * 113.61797 * 89.11694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5654 -5.1064 -0.0917 13 6 2.7283 -6.0270 0.1172 14 6 3.8097 -5.9828 -0.9315 15 6 3.6571 -6.6858 -2.1130 16 17 2.2200 -7.6199 -2.3879 17 6 4.6505 -6.6452 -3.0750 18 6 5.7951 -5.9019 -2.8561 19 6 5.9507 -5.2037 -1.6734 20 6 4.9557 -5.2395 -0.7127 21 17 5.1480 -4.3567 0.7697 22 6 3.2616 -6.2426 1.5433 23 6 2.0592 -7.1747 1.7676 24 6 2.0519 -7.4020 0.2468 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0021 29 1 4.5313 -7.1937 -3.9978 30 1 6.5701 -5.8701 -3.6076 31 1 6.8472 -4.6267 -1.5009 32 1 4.2232 -6.7547 1.5772 33 1 3.2377 -5.3434 2.1590 34 1 1.1714 -6.6610 2.1367 35 1 2.3012 -8.0692 2.3416 36 1 1.0513 -7.4387 -0.1844 37 1 2.6827 -8.2310 -0.0739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427632930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:14 Heat of formation + Delta-G solvation = -2.959784 kcal Electronic energy + Delta-G solvation = -23835.249856 eV Core-core repulsion = 20243.897255 eV Total energy + Delta-G solvation = -3591.352602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.90269 -38.82988 -36.92451 -36.80362 -36.30117 -34.14870 -32.36113 -31.42604 -30.79188 -27.67569 -25.91618 -25.68474 -22.97961 -22.71740 -21.99390 -20.72805 -18.91983 -17.83601 -16.77474 -16.10779 -16.00695 -15.67353 -15.10543 -14.84436 -14.52957 -14.47482 -14.14027 -13.84328 -13.61456 -13.01842 -12.67571 -12.29578 -12.21565 -12.02743 -11.81506 -11.76649 -11.59518 -11.28294 -11.23255 -11.07466 -10.91893 -10.87283 -10.61795 -10.30869 -10.17195 -9.82031 -9.40385 -9.33632 -8.86420 -8.71721 -8.63442 -7.83654 -6.14447 -4.20740 0.80975 0.86624 1.77778 2.20498 3.17910 3.24332 3.31270 3.33759 3.35126 4.05296 4.31336 4.38962 4.47141 4.62093 4.75990 4.93353 4.98474 5.04936 5.19227 5.19715 5.21766 5.45633 5.70362 5.75141 5.85880 5.88357 5.91609 5.98514 6.06314 6.24748 6.29682 6.34246 6.54175 7.32939 7.47379 7.54274 7.70004 7.99399 8.66524 8.80174 9.11375 9.45598 10.95898 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.004876 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.999578 B = 5741.515657 C = 6271.315890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.707 5.707 11 C 0.529 3.471 12 O -0.542 6.542 13 C -0.076 4.076 14 C -0.047 4.047 15 C -0.018 4.018 16 Cl -0.044 7.044 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.102 4.102 20 C -0.026 4.026 21 Cl -0.041 7.041 22 C -0.115 4.115 23 C -0.145 4.145 24 C -0.107 4.107 25 H 0.265 0.735 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.389 0.611 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.702 -15.886 -2.765 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.312 3.688 12 O -0.420 6.420 13 C -0.080 4.080 14 C -0.049 4.049 15 C -0.045 4.045 16 Cl -0.015 7.015 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.053 4.053 21 Cl -0.012 7.012 22 C -0.152 4.152 23 C -0.183 4.183 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.225 0.775 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.556 -15.869 -2.700 20.415 hybrid contribution 0.835 1.186 -0.025 1.451 sum 13.391 -14.683 -2.725 20.058 Atomic orbital electron populations 1.69981 1.06063 1.27127 1.49106 1.24929 0.94887 0.99341 0.94737 0.86405 0.79943 0.83087 0.77795 1.19582 1.20749 1.20741 1.21239 0.93243 0.90397 1.52933 0.91995 1.19138 0.88316 0.81973 0.97764 1.46631 1.11635 1.05815 1.71656 1.19410 0.88188 0.83501 0.77700 1.90642 1.16324 1.84439 1.50587 1.21186 0.94226 0.97847 0.94723 1.19281 0.94523 0.96422 0.94648 1.20667 0.90451 0.98391 0.94982 1.98394 1.36509 1.70855 1.95747 1.21158 0.92757 0.99771 0.98722 1.21058 0.97551 0.96347 0.96905 1.21161 0.98587 0.99604 0.92727 1.20726 0.95805 0.98205 0.90586 1.98405 1.96739 1.73550 1.32460 1.23052 0.98525 1.00662 0.92984 1.22926 0.98797 0.99635 0.96919 1.23040 1.02029 0.93246 0.96162 0.92530 0.95426 0.95488 0.77516 0.84230 0.84066 0.84051 0.89272 0.90297 0.89502 0.91164 0.89219 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -15.08 9.28 -34.44 -0.32 -15.40 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 10 N -0.71 -16.15 5.49 -61.47 -0.34 -16.49 16 11 C 0.53 11.29 6.56 -10.99 -0.07 11.22 16 12 O -0.54 -13.35 15.88 5.56 0.09 -13.26 16 13 C -0.08 -1.23 0.49 -156.00 -0.08 -1.31 16 14 C -0.05 -0.68 4.68 -104.55 -0.49 -1.17 16 15 C -0.02 -0.24 6.13 -39.51 -0.24 -0.48 16 16 Cl -0.04 -0.60 24.37 -51.86 -1.26 -1.86 16 17 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 18 C -0.10 -0.92 10.04 -39.60 -0.40 -1.31 16 19 C -0.10 -1.08 9.83 -39.54 -0.39 -1.47 16 20 C -0.03 -0.35 5.73 -39.50 -0.23 -0.57 16 21 Cl -0.04 -0.56 22.77 -51.86 -1.18 -1.74 16 22 C -0.11 -1.59 4.85 -25.92 -0.13 -1.72 16 23 C -0.15 -1.97 7.80 -25.92 -0.20 -2.18 16 24 C -0.11 -1.54 4.51 -25.92 -0.12 -1.66 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.39 8.09 4.94 -40.82 -0.20 7.89 16 29 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.09 1.06 7.79 -51.93 -0.40 0.65 16 33 H 0.08 1.18 7.39 -51.93 -0.38 0.80 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.46 6.68 -51.92 -0.35 1.11 16 37 H 0.09 1.06 7.07 -51.93 -0.37 0.70 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -32.22 329.77 -9.38 -41.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.20 Total: 5.29 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.17 Total: -9.00 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.40 Total: -42.14 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -2.44 Total: -3.60 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.22 -9.38 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.633 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds