Wall clock time and date at job start Tue Mar 31 2020 15:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99911 * 2 1 4 4 H 1.48500 * 109.46752 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46838 * 299.99642 * 3 2 1 6 6 H 1.48496 * 109.47502 * 59.99662 * 3 2 1 7 7 C 1.37875 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00347 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00025 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00214 * 5.01969 * 11 10 9 13 13 C 1.50697 * 120.00099 * 185.02988 * 11 10 9 14 14 C 1.50705 * 112.84905 * 305.27398 * 13 11 10 15 15 C 1.38327 * 120.01390 * 266.07854 * 14 13 11 16 16 Cl 1.73591 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.38354 * 119.98395 * 180.02562 * 15 14 13 18 18 C 1.38218 * 120.01645 * 359.97127 * 17 15 14 19 19 C 1.38220 * 120.02781 * 0.30206 * 18 17 15 20 20 C 1.38336 * 120.01041 * 86.10250 * 14 13 11 21 21 Cl 1.73596 * 120.00705 * 359.97059 * 20 14 13 22 22 C 1.53783 * 113.69305 * 76.54267 * 13 11 10 23 23 C 1.53777 * 87.08099 * 89.12812 * 22 13 11 24 24 C 1.53780 * 87.08137 * 25.43600 * 23 22 13 25 25 H 0.96998 * 120.00249 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46954 * 59.99921 * 9 7 2 27 27 H 1.08998 * 109.46871 * 300.00171 * 9 7 2 28 28 H 0.97001 * 120.00240 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.99458 * 180.02562 * 17 15 14 30 30 H 1.08006 * 119.98804 * 180.02562 * 18 17 15 31 31 H 1.07996 * 120.00003 * 179.72004 * 19 18 17 32 32 H 1.09001 * 113.61701 * 203.67557 * 22 13 11 33 33 H 1.09002 * 113.61185 * 334.58402 * 22 13 11 34 34 H 1.09006 * 113.61607 * 270.88701 * 23 22 13 35 35 H 1.09004 * 113.61717 * 139.98116 * 23 22 13 36 36 H 1.09010 * 113.61191 * 220.02248 * 24 23 22 37 37 H 1.08992 * 113.61797 * 89.11694 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5654 -5.1064 -0.0917 13 6 2.7283 -6.0270 0.1172 14 6 3.8097 -5.9828 -0.9315 15 6 3.6571 -6.6858 -2.1130 16 17 2.2200 -7.6199 -2.3879 17 6 4.6505 -6.6452 -3.0750 18 6 5.7951 -5.9019 -2.8561 19 6 5.9507 -5.2037 -1.6734 20 6 4.9557 -5.2395 -0.7127 21 17 5.1480 -4.3567 0.7697 22 6 3.2616 -6.2426 1.5433 23 6 2.0592 -7.1747 1.7676 24 6 2.0519 -7.4020 0.2468 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 3.1567 -3.4354 0.0021 29 1 4.5313 -7.1937 -3.9978 30 1 6.5701 -5.8701 -3.6076 31 1 6.8472 -4.6267 -1.5009 32 1 4.2232 -6.7547 1.5772 33 1 3.2377 -5.3434 2.1590 34 1 1.1714 -6.6610 2.1367 35 1 2.3012 -8.0692 2.3416 36 1 1.0513 -7.4387 -0.1844 37 1 2.6827 -8.2310 -0.0739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427632930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:11 Heat of formation + Delta-G solvation = -22.502884 kcal Electronic energy + Delta-G solvation = -23836.097309 eV Core-core repulsion = 20243.897255 eV Total energy + Delta-G solvation = -3592.200054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.16604 -40.03727 -38.34030 -37.84287 -37.28877 -36.16939 -34.41244 -32.44626 -31.66545 -29.65542 -27.20668 -26.93717 -24.83772 -23.62195 -23.14936 -22.28436 -20.55113 -19.01367 -18.30752 -17.59971 -17.23660 -16.98130 -16.69141 -16.37423 -16.00340 -15.50956 -15.38845 -15.28164 -14.87388 -14.45429 -14.14379 -13.96611 -13.75145 -13.28802 -13.13256 -12.91853 -12.90227 -12.77806 -12.57117 -12.38019 -12.28564 -12.17939 -12.16663 -11.80095 -11.49578 -11.25953 -11.00622 -10.85899 -10.84437 -9.92624 -9.77999 -9.75824 -8.32106 -6.49247 -0.06846 -0.04823 0.80841 1.23980 1.39843 1.41422 1.55046 1.61277 2.24260 2.37038 2.55515 3.02193 3.22656 3.38893 3.54395 3.79068 3.82468 3.88772 4.12747 4.20616 4.34044 4.37140 4.54531 4.68050 4.74700 4.93250 4.99126 5.03643 5.06297 5.09019 5.12019 5.18022 5.18654 5.39953 5.44054 5.57206 5.63155 5.80512 6.59830 6.81688 7.18537 7.37472 8.80414 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013173 B = 0.004876 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.999578 B = 5741.515657 C = 6271.315890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.266 3.734 10 N -0.706 5.706 11 C 0.525 3.475 12 O -0.584 6.584 13 C -0.075 4.075 14 C -0.073 4.073 15 C -0.034 4.034 16 Cl -0.057 7.057 17 C -0.102 4.102 18 C -0.083 4.083 19 C -0.099 4.099 20 C -0.040 4.040 21 Cl -0.053 7.053 22 C -0.104 4.104 23 C -0.144 4.144 24 C -0.100 4.100 25 H 0.270 0.730 26 H -0.013 1.013 27 H -0.010 1.010 28 H 0.401 0.599 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.515 -16.106 -3.754 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.311 3.689 12 O -0.465 6.465 13 C -0.079 4.079 14 C -0.075 4.075 15 C -0.061 4.061 16 Cl -0.028 7.028 17 C -0.120 4.120 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.067 4.067 21 Cl -0.024 7.024 22 C -0.142 4.142 23 C -0.181 4.181 24 C -0.137 4.137 25 H 0.079 0.921 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.239 0.761 29 H 0.183 0.817 30 H 0.202 0.798 31 H 0.185 0.815 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.406 -16.122 -3.687 23.295 hybrid contribution -0.359 1.195 0.208 1.265 sum 16.048 -14.926 -3.479 22.191 Atomic orbital electron populations 1.70134 1.08203 1.28589 1.49725 1.26035 0.95787 1.03743 0.93641 0.85162 0.79120 0.77308 0.78011 1.17711 1.20064 1.20070 1.21534 0.93912 0.90571 1.53280 0.90580 1.18592 0.88616 0.84281 0.94133 1.46455 1.11446 1.05565 1.72334 1.20381 0.88719 0.84159 0.75636 1.90607 1.18729 1.85176 1.51967 1.20992 0.93961 0.95809 0.97104 1.19192 0.94676 0.98692 0.94970 1.20909 0.90874 0.98897 0.95463 1.98390 1.37515 1.71150 1.95749 1.21555 0.92164 0.99521 0.98775 1.21580 0.97610 0.93991 0.96874 1.21563 0.98552 0.99377 0.92296 1.20920 0.96406 0.98445 0.90926 1.98398 1.96674 1.73887 1.33459 1.23079 0.99803 1.00316 0.90984 1.22908 0.97651 1.00688 0.96851 1.23040 1.01042 0.93137 0.96512 0.92113 0.99481 0.99191 0.76110 0.81677 0.79817 0.81531 0.86381 0.91740 0.92286 0.87756 0.91639 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 4 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.56 -31.70 9.28 25.60 0.24 -31.46 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 15.56 5.43 85.64 0.47 16.02 16 10 N -0.71 -33.73 5.49 -466.79 -2.56 -36.29 16 11 C 0.52 23.55 6.56 87.66 0.57 24.12 16 12 O -0.58 -30.87 15.88 -3.04 -0.05 -30.92 16 13 C -0.08 -2.45 0.49 -53.15 -0.03 -2.48 16 14 C -0.07 -2.06 4.68 -19.82 -0.09 -2.15 16 15 C -0.03 -0.86 6.13 22.32 0.14 -0.72 16 16 Cl -0.06 -1.51 24.37 -2.72 -0.07 -1.58 16 17 C -0.10 -1.77 9.83 22.29 0.22 -1.55 16 18 C -0.08 -1.13 10.04 22.26 0.22 -0.90 16 19 C -0.10 -1.73 9.83 22.29 0.22 -1.51 16 20 C -0.04 -0.98 5.73 22.32 0.13 -0.85 16 21 Cl -0.05 -1.39 22.77 -2.72 -0.06 -1.46 16 22 C -0.10 -2.85 4.85 31.12 0.15 -2.70 16 23 C -0.14 -3.88 7.80 31.12 0.24 -3.64 16 24 C -0.10 -2.88 4.51 31.12 0.14 -2.74 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H 0.40 17.00 4.94 -92.71 -0.46 16.54 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.12 2.55 7.79 -2.39 -0.02 2.53 16 33 H 0.06 1.95 7.39 -2.39 -0.02 1.93 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.06 2.23 6.68 -2.38 -0.02 2.21 16 37 H 0.11 2.63 7.07 -2.39 -0.02 2.61 16 Total: -1.00 -74.76 329.77 3.31 -71.45 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.65 Total: 20.00 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 3.08 Total: -9.65 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -2.28 Total: -93.03 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.13 Total: -3.04 kcal Total: -74.76 3.31 -71.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427632930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.944 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds