Wall clock time and date at job start Tue Mar 31 2020 15:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39937 * 120.45810 * 308.43214 * 3 2 1 5 5 N 1.31300 * 120.74265 * 179.76252 * 4 3 2 6 6 C 1.32843 * 121.81289 * 0.53512 * 5 4 3 7 7 C 1.48057 * 119.57903 * 179.74777 * 6 5 4 8 8 O 1.21533 * 120.00157 * 179.72050 * 7 6 5 9 9 N 1.34778 * 119.99949 * 359.72067 * 7 6 5 10 10 C 1.39086 * 119.99811 * 185.09943 * 9 7 6 11 11 C 1.39527 * 119.83648 * 34.39300 * 10 9 7 12 12 C 1.36343 * 120.16516 * 180.27266 * 11 10 9 13 13 C 1.40892 * 119.83211 * 359.45078 * 12 11 10 14 14 C 1.41119 * 120.15939 * 180.25105 * 13 12 11 15 15 H 1.08001 * 119.99492 * 205.52504 * 14 13 12 16 16 C 1.39924 * 120.00379 * 25.52525 * 14 13 12 17 17 N 1.30858 * 119.99857 * 16.69465 * 16 14 13 18 18 Si 1.86796 * 120.00147 * 196.70072 * 16 14 13 19 19 H 1.48500 * 109.47083 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47274 * 120.00159 * 18 16 14 21 21 H 1.48503 * 109.46940 * 239.99729 * 18 16 14 22 22 C 1.40887 * 119.67562 * 0.56927 * 13 12 11 23 23 C 1.36342 * 119.83329 * 359.70553 * 22 13 12 24 24 C 1.39508 * 120.84087 * 359.46495 * 6 5 4 25 25 Cl 1.73603 * 120.41720 * 180.28220 * 24 6 5 26 26 C 1.38551 * 119.17040 * 0.26021 * 24 6 5 27 27 H 1.07999 * 119.62760 * 0.04735 * 4 3 2 28 28 H 0.97001 * 120.00456 * 5.10674 * 9 7 6 29 29 H 1.08003 * 119.91249 * 359.97438 * 11 10 9 30 30 H 1.08006 * 120.08528 * 179.69581 * 12 11 10 31 31 H 0.96996 * 120.00242 * 179.97438 * 17 16 14 32 32 H 1.07996 * 120.07866 * 179.69080 * 22 13 12 33 33 H 1.08003 * 119.92003 * 179.97438 * 23 22 13 34 34 H 1.07998 * 120.82943 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2777 -0.7488 0.9449 5 7 4.5907 -0.7560 0.9471 6 6 5.2963 -0.0517 0.0691 7 6 6.7755 -0.0915 0.1201 8 8 7.4286 0.5457 -0.6826 9 7 7.3977 -0.8345 1.0567 10 6 8.7830 -0.7894 1.1729 11 6 9.4621 0.4035 0.9228 12 6 10.8204 0.4539 1.0293 13 6 11.5373 -0.6996 1.4041 14 6 12.9429 -0.6539 1.5215 15 1 13.5247 -1.5553 1.3975 16 6 13.5827 0.5592 1.7986 17 7 12.8954 1.5694 2.2670 18 14 15.4181 0.7368 1.4997 19 1 15.9595 -0.5412 0.9715 20 1 15.6564 1.8211 0.5134 21 1 16.0975 1.0714 2.7770 22 6 10.8447 -1.9007 1.6545 23 6 9.4867 -1.9374 1.5386 24 6 4.6613 0.7203 -0.9041 25 17 5.5943 1.6306 -2.0507 26 6 3.2767 0.7510 -0.9443 27 1 2.7394 -1.3316 1.6777 28 1 6.8795 -1.4008 1.6498 29 1 8.9107 1.2879 0.6395 30 1 11.3452 1.3767 0.8306 31 1 13.3390 2.4103 2.4594 32 1 11.3882 -2.7900 1.9373 33 1 8.9544 -2.8574 1.7298 34 1 2.7575 1.3398 -1.6860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427907216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:46 Heat of formation + Delta-G solvation = 44.549229 kcal Electronic energy + Delta-G solvation = -22985.817533 eV Core-core repulsion = 19295.417582 eV Total energy + Delta-G solvation = -3690.399950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04414 -40.70053 -38.97668 -37.88174 -37.64806 -36.20852 -34.81780 -33.95436 -32.72010 -31.39238 -30.80215 -27.63640 -26.15769 -24.98619 -23.39628 -22.97533 -21.47693 -20.48681 -19.42866 -19.17756 -18.52794 -17.56680 -17.06071 -16.53903 -16.47343 -16.15373 -15.76182 -15.51441 -15.00221 -14.85995 -14.63596 -14.44062 -14.27354 -14.26434 -13.89788 -13.71355 -13.61190 -13.24556 -13.14850 -12.87593 -12.78281 -12.51492 -12.31635 -11.67208 -11.47905 -11.32496 -11.10620 -11.06367 -10.74583 -10.43914 -10.25192 -9.41853 -8.82833 -8.57860 -6.24591 -1.14961 -0.25479 0.80010 0.83336 1.18700 1.30394 1.40823 1.46622 1.53809 1.55933 2.02723 2.06925 2.22812 2.46534 2.59271 2.79331 2.94186 3.36171 3.46879 3.68875 3.78081 3.94876 4.34943 4.47381 4.50546 4.59586 4.97659 5.01404 5.12840 5.20201 5.32402 5.45377 5.70554 5.87264 6.08652 6.13106 6.16522 6.31448 6.37366 6.68552 6.72472 6.95239 7.01947 7.30685 8.35118 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.027087 B = 0.002573 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.459888 B =10880.020552 C =11567.414772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.285 3.715 3 C -0.035 4.035 4 C 0.170 3.830 5 N -0.450 5.450 6 C 0.115 3.885 7 C 0.538 3.462 8 O -0.529 6.529 9 N -0.619 5.619 10 C 0.006 3.994 11 C -0.093 4.093 12 C -0.179 4.179 13 C 0.074 3.926 14 C -0.491 4.491 15 H 0.080 0.920 16 C 0.031 3.969 17 N -0.825 5.825 18 Si 0.982 3.018 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.265 1.265 22 C -0.223 4.223 23 C -0.095 4.095 24 C -0.054 4.054 25 Cl -0.018 7.018 26 C -0.007 4.007 27 H 0.219 0.781 28 H 0.421 0.579 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.287 0.713 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 -2.375 -3.114 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.031 4.031 3 C -0.041 4.041 4 C 0.006 3.994 5 N -0.160 5.160 6 C -0.023 4.023 7 C 0.324 3.676 8 O -0.405 6.405 9 N -0.264 5.264 10 C -0.088 4.088 11 C -0.113 4.113 12 C -0.199 4.199 13 C 0.072 3.928 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.179 1.179 20 H -0.193 1.193 21 H -0.190 1.190 22 C -0.243 4.243 23 C -0.115 4.115 24 C -0.085 4.085 25 Cl 0.011 6.989 26 C -0.036 4.036 27 H 0.235 0.765 28 H 0.259 0.741 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.151 0.849 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.132 -2.084 -3.080 19.490 hybrid contribution 0.822 0.772 -0.493 1.231 sum -18.310 -1.312 -3.573 18.701 Atomic orbital electron populations 1.81384 1.12619 1.08273 1.07962 1.24905 0.91491 0.93333 0.93391 1.16935 0.85423 1.02157 0.99544 1.23702 0.87958 0.92807 0.94900 1.67870 1.09188 1.17789 1.21176 1.21009 0.93840 0.94781 0.92699 1.18224 0.86557 0.81346 0.81510 1.90904 1.66116 1.43757 1.39746 1.42668 1.05188 1.44499 1.34026 1.17174 0.82211 0.94291 1.15079 1.20434 0.94318 0.96012 1.00566 1.20870 0.93161 0.99575 1.06309 1.18022 0.94116 0.92012 0.88690 1.19840 0.92489 0.95723 1.43975 0.90202 1.26799 1.05603 0.94514 0.91419 1.69900 1.40362 1.04038 1.30757 0.85157 0.76133 0.79471 0.78944 1.17923 1.19299 1.18979 1.20805 0.93925 0.98428 1.11165 1.20389 0.93869 0.95859 1.01379 1.21840 0.93329 0.98318 0.94974 1.98471 1.72589 1.71215 1.56629 1.21838 0.90045 0.94775 0.96904 0.76460 0.74120 0.88554 0.88447 0.90218 0.87206 0.84914 0.79293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.24 18.54 19.00 0.35 -6.88 16 2 C 0.29 3.28 15.36 88.33 1.36 4.64 16 3 C -0.03 -0.33 5.75 -21.22 -0.12 -0.46 16 4 C 0.17 1.66 10.91 85.18 0.93 2.59 16 5 N -0.45 -7.87 9.52 -183.83 -1.75 -9.62 16 6 C 0.11 2.69 6.75 41.90 0.28 2.97 16 7 C 0.54 17.77 7.52 86.85 0.65 18.43 16 8 O -0.53 -21.19 11.62 -3.82 -0.04 -21.24 16 9 N -0.62 -20.69 5.29 -305.53 -1.61 -22.31 16 10 C 0.01 0.25 6.27 38.61 0.24 0.49 16 11 C -0.09 -4.61 8.57 22.14 0.19 -4.42 16 12 C -0.18 -9.79 8.63 22.48 0.19 -9.60 16 13 C 0.07 4.01 5.57 -21.27 -0.12 3.90 16 14 C -0.49 -26.39 9.04 23.39 0.21 -26.18 16 15 H 0.08 4.10 7.90 -2.91 -0.02 4.07 16 16 C 0.03 1.59 5.15 85.25 0.44 2.03 16 17 N -0.82 -43.76 10.95 21.82 0.24 -43.52 16 18 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 19 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 22 C -0.22 -10.55 9.74 22.48 0.22 -10.33 16 23 C -0.10 -3.92 9.90 22.14 0.22 -3.71 16 24 C -0.05 -1.07 6.36 22.65 0.14 -0.92 16 25 Cl -0.02 -0.46 26.00 -2.72 -0.07 -0.53 16 26 C -0.01 -0.08 9.70 22.75 0.22 0.14 16 27 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 28 H 0.42 11.21 8.14 -92.71 -0.75 10.46 16 29 H 0.10 4.78 6.46 -2.91 -0.02 4.76 16 30 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 31 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 32 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -67.86 327.25 4.65 -63.21 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.44 Total: 20.84 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 5.06 Total: -20.43 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.77 Total: -82.33 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.07 Total: -0.53 kcal Total: -67.86 4.65 -63.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427907216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.763 kcal (2) G-P(sol) polarization free energy of solvation -67.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds