Wall clock time and date at job start Tue Mar 31 2020 15:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99676 * 2 1 4 4 H 1.48499 * 109.47227 * 270.00246 * 3 2 1 5 5 H 1.48498 * 109.47544 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.47412 * 150.00247 * 3 2 1 7 7 C 1.37877 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99307 * 173.55124 * 7 2 1 9 9 C 1.50693 * 120.00163 * 353.55079 * 7 2 1 10 10 C 1.53002 * 115.54960 * 85.40444 * 9 7 2 11 11 N 1.46500 * 109.46697 * 65.14269 * 10 9 7 12 12 C 1.34781 * 119.99783 * 178.28066 * 11 10 9 13 13 O 1.21285 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00164 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47422 * 179.97438 * 14 12 11 16 16 C 1.38250 * 119.99171 * 99.99624 * 15 14 12 17 17 C 1.38202 * 120.02438 * 180.23625 * 16 15 14 18 18 C 1.38388 * 120.01234 * 359.49296 * 17 16 15 19 19 Cl 1.73601 * 120.00350 * 180.28058 * 18 17 16 20 20 C 1.38307 * 119.98519 * 0.51071 * 18 17 16 21 21 C 1.38337 * 119.99676 * 279.98318 * 15 14 12 22 22 Cl 1.73598 * 120.00499 * 0.03772 * 21 15 14 23 23 C 1.53007 * 117.49888 * 231.07471 * 9 7 2 24 24 C 1.53001 * 117.50071 * 299.73579 * 9 7 2 25 25 H 0.96993 * 120.00335 * 5.06429 * 1 2 3 26 26 H 1.08997 * 109.47042 * 305.14259 * 10 9 7 27 27 H 1.09003 * 109.46862 * 185.13735 * 10 9 7 28 28 H 0.96999 * 120.00782 * 358.27881 * 11 10 9 29 29 H 1.09006 * 109.47000 * 60.00109 * 14 12 11 30 30 H 1.09003 * 109.47369 * 300.00100 * 14 12 11 31 31 H 1.08001 * 119.98397 * 359.96267 * 16 15 14 32 32 H 1.07992 * 119.99151 * 179.74738 * 17 16 15 33 33 H 1.07996 * 120.01275 * 179.77242 * 20 18 17 34 34 H 1.08994 * 117.49553 * 215.00497 * 23 9 7 35 35 H 1.08999 * 117.49521 * 0.02562 * 23 9 7 36 36 H 1.09008 * 117.49460 * 359.97406 * 24 9 7 37 37 H 1.08999 * 117.50125 * 144.97283 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1056 9 6 1.2583 -2.4950 0.1455 10 6 0.7022 -3.0860 -1.1517 11 7 1.8113 -3.4582 -2.0335 12 6 1.5601 -4.0346 -3.2256 13 8 0.4158 -4.2454 -3.5681 14 6 2.7008 -4.4170 -4.1330 15 6 2.1544 -5.0384 -5.3925 16 6 2.0520 -4.2846 -6.5469 17 6 1.5465 -4.8525 -7.7010 18 6 1.1521 -6.1790 -7.7045 19 17 0.5239 -6.8940 -9.1563 20 6 1.2542 -6.9335 -6.5499 21 6 1.7555 -6.3630 -5.3934 22 17 1.8834 -7.3092 -3.9436 23 6 1.7473 -3.4738 1.2150 24 6 0.4419 -2.7018 1.4229 25 1 -0.4850 0.8367 -0.0741 26 1 0.0755 -2.3456 -1.6488 27 1 0.1077 -3.9704 -0.9224 28 1 2.7264 -3.2900 -1.7594 29 1 3.3449 -5.1343 -3.6243 30 1 3.2772 -3.5273 -4.3869 31 1 2.3632 -3.2504 -6.5456 32 1 1.4630 -4.2620 -8.6013 33 1 0.9431 -7.9677 -6.5511 34 1 1.6729 -4.5386 0.9945 35 1 2.6085 -3.1764 1.8133 36 1 0.4450 -1.8968 2.1579 37 1 -0.4915 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431125972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:41 Heat of formation + Delta-G solvation = -11.545580 kcal Electronic energy + Delta-G solvation = -22384.015755 eV Core-core repulsion = 18792.290845 eV Total energy + Delta-G solvation = -3591.724910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03757 -38.71006 -36.95247 -36.65741 -36.37826 -33.29134 -32.77948 -32.00267 -31.08672 -28.15304 -25.98343 -24.98068 -23.16440 -22.04149 -21.20779 -19.78193 -19.30538 -17.54597 -16.76722 -16.33100 -16.16128 -15.66711 -14.86881 -14.79013 -14.50278 -14.21276 -14.08472 -13.85048 -13.55750 -13.14314 -12.64432 -12.52256 -12.31300 -12.03242 -11.87010 -11.62013 -11.41995 -11.20719 -11.17603 -11.03370 -10.96319 -10.94365 -10.55791 -10.29714 -9.70266 -9.42430 -9.09433 -8.99659 -8.73541 -8.53046 -8.30193 -8.10139 -6.11238 -4.20296 0.79840 0.93061 1.68076 2.15810 3.17286 3.21256 3.22328 3.30924 3.32413 3.92423 4.31936 4.46801 4.50769 4.72281 4.96212 5.11046 5.16457 5.22710 5.35907 5.43081 5.49082 5.55787 5.76708 5.90948 6.01147 6.13279 6.31172 6.37218 6.44494 6.54949 6.67044 6.86175 7.06931 7.25638 7.40570 7.45690 7.77672 8.25985 8.30543 8.80043 8.85452 9.46728 10.96495 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.002943 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.572122 B = 9511.300961 C =10403.688308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.165 3.835 11 N -0.702 5.702 12 C 0.509 3.491 13 O -0.546 6.546 14 C -0.113 4.113 15 C -0.042 4.042 16 C -0.085 4.085 17 C -0.105 4.105 18 C -0.028 4.028 19 Cl -0.066 7.066 20 C -0.103 4.103 21 C -0.007 4.007 22 Cl -0.053 7.053 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.400 0.600 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -11.862 -13.654 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.042 3.958 11 N -0.351 5.351 12 C 0.293 3.707 13 O -0.424 6.424 14 C -0.153 4.153 15 C -0.043 4.043 16 C -0.103 4.103 17 C -0.124 4.124 18 C -0.055 4.055 19 Cl -0.037 7.037 20 C -0.123 4.123 21 C -0.034 4.034 22 Cl -0.024 7.024 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.234 0.766 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.041 -12.018 -13.794 18.977 hybrid contribution 0.691 0.925 0.180 1.169 sum 5.731 -11.092 -13.614 18.472 Atomic orbital electron populations 1.69972 1.05907 1.26968 1.48096 1.24989 0.94791 0.98952 0.94285 0.86637 0.79946 0.83552 0.78154 1.20655 1.21164 1.19807 1.20339 0.92823 0.88617 1.52172 0.92180 1.19029 0.98582 0.93896 0.85745 1.20980 0.87270 0.96874 0.90663 1.45936 1.11503 1.60077 1.17555 1.20101 0.89838 0.78524 0.82231 1.90694 1.22439 1.55046 1.74270 1.20794 0.98385 1.02879 0.93209 1.19345 0.98003 0.91645 0.95297 1.20992 0.98335 1.00002 0.90982 1.21087 0.98765 0.93059 0.99471 1.20690 1.02604 0.94020 0.88199 1.98373 1.85616 1.83743 1.35990 1.20809 1.00426 1.00926 0.90096 1.20561 1.02253 0.92325 0.88269 1.98387 1.96314 1.71644 1.36013 1.23024 0.98667 0.95659 1.07437 1.22494 0.92282 1.01085 1.02780 0.92816 0.90999 0.94522 0.76612 0.87592 0.87421 0.83964 0.84316 0.84023 0.91663 0.90356 0.89829 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.87 12.91 55.43 0.72 -23.15 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 20.08 29.55 -169.99 -5.02 15.06 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.50 -12.57 8.63 -34.44 -0.30 -12.86 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.03 0.65 1.38 -155.66 -0.21 0.43 16 10 C 0.17 3.66 5.50 -4.04 -0.02 3.63 16 11 N -0.70 -12.93 5.47 -60.29 -0.33 -13.26 16 12 C 0.51 8.88 7.59 -10.99 -0.08 8.80 16 13 O -0.55 -11.60 15.95 5.55 0.09 -11.51 16 14 C -0.11 -1.41 5.29 -29.04 -0.15 -1.57 16 15 C -0.04 -0.53 4.43 -104.58 -0.46 -0.99 16 16 C -0.08 -0.94 9.67 -39.59 -0.38 -1.32 16 17 C -0.11 -1.08 9.83 -39.54 -0.39 -1.47 16 18 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 19 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 20 C -0.10 -1.19 9.62 -39.51 -0.38 -1.57 16 21 C -0.01 -0.09 6.19 -39.50 -0.24 -0.33 16 22 Cl -0.05 -0.68 27.32 -51.86 -1.42 -2.10 16 23 C -0.21 -4.29 9.96 -26.69 -0.27 -4.55 16 24 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 25 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 26 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 27 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.40 6.61 8.37 -40.82 -0.34 6.27 16 29 H 0.11 1.16 7.35 -51.93 -0.38 0.77 16 30 H 0.11 1.08 8.00 -51.93 -0.42 0.67 16 31 H 0.14 1.28 8.04 -52.49 -0.42 0.86 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.08 2.00 8.14 -51.92 -0.42 1.58 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -29.31 353.51 -10.12 -39.43 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.49 Total: 6.49 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -3.49 Total: -14.13 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.39 Total: -36.42 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -2.92 Total: -4.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.31 -10.12 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431125972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.885 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds