Wall clock time and date at job start Tue Mar 31 2020 15:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99676 * 2 1 4 4 H 1.48499 * 109.47227 * 270.00246 * 3 2 1 5 5 H 1.48498 * 109.47544 * 29.99844 * 3 2 1 6 6 H 1.48498 * 109.47412 * 150.00247 * 3 2 1 7 7 C 1.37877 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99307 * 173.55124 * 7 2 1 9 9 C 1.50693 * 120.00163 * 353.55079 * 7 2 1 10 10 C 1.53002 * 115.54960 * 85.40444 * 9 7 2 11 11 N 1.46500 * 109.46697 * 65.14269 * 10 9 7 12 12 C 1.34781 * 119.99783 * 178.28066 * 11 10 9 13 13 O 1.21285 * 119.99688 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00164 * 179.97438 * 12 11 10 15 15 C 1.50698 * 109.47422 * 179.97438 * 14 12 11 16 16 C 1.38250 * 119.99171 * 99.99624 * 15 14 12 17 17 C 1.38202 * 120.02438 * 180.23625 * 16 15 14 18 18 C 1.38388 * 120.01234 * 359.49296 * 17 16 15 19 19 Cl 1.73601 * 120.00350 * 180.28058 * 18 17 16 20 20 C 1.38307 * 119.98519 * 0.51071 * 18 17 16 21 21 C 1.38337 * 119.99676 * 279.98318 * 15 14 12 22 22 Cl 1.73598 * 120.00499 * 0.03772 * 21 15 14 23 23 C 1.53007 * 117.49888 * 231.07471 * 9 7 2 24 24 C 1.53001 * 117.50071 * 299.73579 * 9 7 2 25 25 H 0.96993 * 120.00335 * 5.06429 * 1 2 3 26 26 H 1.08997 * 109.47042 * 305.14259 * 10 9 7 27 27 H 1.09003 * 109.46862 * 185.13735 * 10 9 7 28 28 H 0.96999 * 120.00782 * 358.27881 * 11 10 9 29 29 H 1.09006 * 109.47000 * 60.00109 * 14 12 11 30 30 H 1.09003 * 109.47369 * 300.00100 * 14 12 11 31 31 H 1.08001 * 119.98397 * 359.96267 * 16 15 14 32 32 H 1.07992 * 119.99151 * 179.74738 * 17 16 15 33 33 H 1.07996 * 120.01275 * 179.77242 * 20 18 17 34 34 H 1.08994 * 117.49553 * 215.00497 * 23 9 7 35 35 H 1.08999 * 117.49521 * 0.02562 * 23 9 7 36 36 H 1.09008 * 117.49460 * 359.97406 * 24 9 7 37 37 H 1.08999 * 117.50125 * 144.97283 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0795 -1.1968 -0.1056 9 6 1.2583 -2.4950 0.1455 10 6 0.7022 -3.0860 -1.1517 11 7 1.8113 -3.4582 -2.0335 12 6 1.5601 -4.0346 -3.2256 13 8 0.4158 -4.2454 -3.5681 14 6 2.7008 -4.4170 -4.1330 15 6 2.1544 -5.0384 -5.3925 16 6 2.0520 -4.2846 -6.5469 17 6 1.5465 -4.8525 -7.7010 18 6 1.1521 -6.1790 -7.7045 19 17 0.5239 -6.8940 -9.1563 20 6 1.2542 -6.9335 -6.5499 21 6 1.7555 -6.3630 -5.3934 22 17 1.8834 -7.3092 -3.9436 23 6 1.7473 -3.4738 1.2150 24 6 0.4419 -2.7018 1.4229 25 1 -0.4850 0.8367 -0.0741 26 1 0.0755 -2.3456 -1.6488 27 1 0.1077 -3.9704 -0.9224 28 1 2.7264 -3.2900 -1.7594 29 1 3.3449 -5.1343 -3.6243 30 1 3.2772 -3.5273 -4.3869 31 1 2.3632 -3.2504 -6.5456 32 1 1.4630 -4.2620 -8.6013 33 1 0.9431 -7.9677 -6.5511 34 1 1.6729 -4.5386 0.9945 35 1 2.6085 -3.1764 1.8133 36 1 0.4450 -1.8968 2.1579 37 1 -0.4915 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431125972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:41 Heat of formation + Delta-G solvation = -26.693007 kcal Electronic energy + Delta-G solvation = -22384.672597 eV Core-core repulsion = 18792.290845 eV Total energy + Delta-G solvation = -3592.381752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11275 -39.97545 -38.42927 -37.76036 -37.28267 -34.87619 -33.96598 -33.74479 -31.93328 -29.34960 -27.72979 -26.63868 -24.01623 -23.11627 -22.85536 -21.33166 -20.94899 -18.56472 -18.19579 -17.71730 -17.27786 -16.86918 -16.60790 -16.11825 -15.99576 -15.46533 -15.13666 -15.01430 -14.64327 -14.56349 -14.14715 -13.83667 -13.48693 -13.32839 -13.13801 -12.90642 -12.87242 -12.80746 -12.48744 -12.32662 -12.08706 -12.04113 -11.97352 -11.89151 -11.47942 -10.91994 -10.82471 -10.44426 -10.06607 -9.95439 -9.77780 -9.61814 -8.07855 -6.21300 -0.08844 0.07771 0.81835 1.26602 1.43921 1.47498 1.55376 1.80816 2.23470 2.44151 2.64876 3.20674 3.51319 3.54784 3.64777 3.93646 4.08599 4.11702 4.26341 4.30975 4.47483 4.57515 4.64484 4.66775 4.68621 4.75791 4.89973 5.00209 5.06204 5.09344 5.26131 5.28077 5.54912 5.60224 5.62026 5.71713 5.80410 6.38636 6.81827 6.87662 7.45321 7.48771 8.99660 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.002943 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.572122 B = 9511.300961 C =10403.688308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.009 3.991 10 C 0.183 3.817 11 N -0.700 5.700 12 C 0.508 3.492 13 O -0.586 6.586 14 C -0.102 4.102 15 C -0.061 4.061 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.033 4.033 19 Cl -0.057 7.057 20 C -0.111 4.111 21 C -0.022 4.022 22 Cl -0.062 7.062 23 C -0.176 4.176 24 C -0.163 4.163 25 H 0.258 0.742 26 H 0.028 0.972 27 H 0.030 0.970 28 H 0.411 0.589 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 -12.022 -14.708 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.008 3.992 10 C 0.059 3.941 11 N -0.349 5.349 12 C 0.295 3.705 13 O -0.467 6.467 14 C -0.141 4.141 15 C -0.062 4.062 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.060 4.060 19 Cl -0.028 7.028 20 C -0.130 4.130 21 C -0.049 4.049 22 Cl -0.033 7.033 23 C -0.214 4.214 24 C -0.201 4.201 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.247 0.753 29 H 0.142 0.858 30 H 0.156 0.844 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.169 0.831 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.043 -12.192 -14.852 20.465 hybrid contribution 0.047 0.919 0.446 1.023 sum 7.090 -11.272 -14.406 19.618 Atomic orbital electron populations 1.70109 1.07362 1.27308 1.49855 1.25710 0.95400 1.02100 0.94382 0.85682 0.78889 0.79726 0.78106 1.20262 1.21913 1.18781 1.20677 0.93238 0.89449 1.50840 0.91516 1.19060 0.99415 0.94447 0.86266 1.20479 0.87857 0.95190 0.90607 1.45827 1.11021 1.60355 1.17740 1.20931 0.90654 0.77003 0.81921 1.90675 1.24673 1.56408 1.74976 1.20781 0.96525 1.04625 0.92187 1.19502 0.99031 0.91823 0.95887 1.21304 0.97775 1.00855 0.90596 1.21403 0.97683 0.92954 1.00195 1.20845 1.02375 0.94420 0.88380 1.98377 1.85454 1.83668 1.35269 1.20965 1.00395 1.01579 0.90097 1.20739 1.03160 0.92699 0.88341 1.98375 1.96417 1.71888 1.36614 1.23004 0.97296 0.96207 1.04847 1.22433 0.93729 1.01457 1.02490 0.93284 0.95344 0.95183 0.75313 0.85790 0.84401 0.81864 0.81965 0.83147 0.89491 0.89478 0.91856 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 12.91 21.45 0.28 -50.41 16 2 C 0.02 1.28 5.39 84.65 0.46 1.74 16 3 Si 0.95 41.02 29.55 68.60 2.03 43.04 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.50 -24.92 8.63 25.60 0.22 -24.70 16 8 H 0.07 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.01 0.40 1.38 -52.93 -0.07 0.33 16 10 C 0.18 8.20 5.50 86.38 0.48 8.67 16 11 N -0.70 -25.17 5.47 -463.05 -2.54 -27.71 16 12 C 0.51 17.25 7.59 87.65 0.67 17.91 16 13 O -0.59 -24.97 15.95 -3.05 -0.05 -25.01 16 14 C -0.10 -2.33 5.29 29.10 0.15 -2.17 16 15 C -0.06 -1.44 4.43 -19.84 -0.09 -1.53 16 16 C -0.09 -1.72 9.67 22.26 0.22 -1.51 16 17 C -0.10 -1.90 9.83 22.30 0.22 -1.68 16 18 C -0.03 -0.67 6.32 22.32 0.14 -0.53 16 19 Cl -0.06 -1.02 28.96 -2.72 -0.08 -1.10 16 20 C -0.11 -2.45 9.62 22.31 0.21 -2.24 16 21 C -0.02 -0.55 6.19 22.32 0.14 -0.41 16 22 Cl -0.06 -1.56 27.32 -2.72 -0.07 -1.63 16 23 C -0.18 -6.87 9.96 30.62 0.30 -6.56 16 24 C -0.16 -7.36 9.42 30.62 0.29 -7.07 16 25 H 0.26 13.95 8.32 -92.71 -0.77 13.17 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 1.36 8.09 -2.39 -0.02 1.34 16 28 H 0.41 12.85 8.37 -92.71 -0.78 12.07 16 29 H 0.12 2.39 7.35 -2.38 -0.02 2.38 16 30 H 0.14 2.31 8.00 -2.39 -0.02 2.29 16 31 H 0.16 2.43 8.04 -2.91 -0.02 2.41 16 32 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16 37 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -63.65 353.51 3.23 -60.43 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.33 Total: 22.16 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.33 Total: -19.76 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -2.26 Total: -78.12 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.15 Total: -2.73 kcal Total: -63.65 3.23 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431125972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.732 kcal (2) G-P(sol) polarization free energy of solvation -63.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds