Wall clock time and date at job start Tue Mar 31 2020 15:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48493 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46944 * 300.00376 * 3 2 1 6 6 H 1.48499 * 109.46988 * 59.99911 * 3 2 1 7 7 C 1.37875 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99686 * 173.55421 * 7 2 1 9 9 C 1.50703 * 120.00170 * 353.55334 * 7 2 1 10 10 C 1.52991 * 115.54903 * 85.40719 * 9 7 2 11 11 N 1.46493 * 109.47539 * 65.13976 * 10 9 7 12 12 C 1.34777 * 120.00442 * 178.26933 * 11 10 9 13 13 O 1.21288 * 119.99818 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00553 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47370 * 179.97438 * 14 12 11 16 16 C 1.38253 * 119.99456 * 100.00659 * 15 14 12 17 17 C 1.38220 * 120.03696 * 179.97438 * 16 15 14 18 18 C 1.38247 * 120.03744 * 0.02562 * 17 16 15 19 19 C 1.38301 * 120.00068 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 120.01808 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.00550 * 279.98222 * 15 14 12 22 22 Cl 1.73611 * 120.01761 * 0.02562 * 21 15 14 23 23 C 1.53001 * 117.49564 * 231.07603 * 9 7 2 24 24 C 1.52998 * 117.49594 * 299.73245 * 9 7 2 25 25 H 0.97003 * 119.99811 * 5.05801 * 1 2 3 26 26 H 1.09002 * 109.47478 * 305.13791 * 10 9 7 27 27 H 1.09006 * 109.47180 * 185.14231 * 10 9 7 28 28 H 0.97000 * 119.99918 * 358.27662 * 11 10 9 29 29 H 1.09004 * 109.46646 * 60.00106 * 14 12 11 30 30 H 1.08996 * 109.47302 * 300.00875 * 14 12 11 31 31 H 1.08004 * 119.98073 * 0.24747 * 16 15 14 32 32 H 1.07996 * 119.98182 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.00002 * 180.02562 * 18 17 16 34 34 H 1.08999 * 117.49826 * 215.00290 * 23 9 7 35 35 H 1.09000 * 117.50079 * 0.02562 * 23 9 7 36 36 H 1.08995 * 117.50224 * 359.97438 * 24 9 7 37 37 H 1.08999 * 117.49495 * 144.97551 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1517 11 7 1.8110 -3.4583 -2.0335 12 6 1.5598 -4.0347 -3.2256 13 8 0.4155 -4.2448 -3.5685 14 6 2.7006 -4.4173 -4.1330 15 6 2.1540 -5.0389 -5.3924 16 6 2.0518 -4.2853 -6.5470 17 6 1.5511 -4.8547 -7.7027 18 6 1.1516 -6.1782 -7.7052 19 6 1.2532 -6.9334 -6.5511 20 17 0.7522 -8.5956 -6.5539 21 6 1.7553 -6.3631 -5.3933 22 17 1.8835 -7.3097 -3.9437 23 6 1.7470 -3.4738 1.2150 24 6 0.4418 -2.7017 1.4228 25 1 -0.4850 0.8368 -0.0741 26 1 0.0753 -2.3456 -1.6489 27 1 0.1074 -3.9703 -0.9225 28 1 2.7261 -3.2900 -1.7594 29 1 3.3447 -5.1345 -3.6242 30 1 3.2769 -3.5277 -4.3869 31 1 2.3674 -3.2524 -6.5471 32 1 1.4720 -4.2654 -8.6042 33 1 0.7608 -6.6226 -8.6087 34 1 1.6725 -4.5387 0.9945 35 1 2.6082 -3.1766 1.8133 36 1 0.4449 -1.8968 2.1578 37 1 -0.4917 -3.2582 1.3390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431133543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:45 Heat of formation + Delta-G solvation = -10.517240 kcal Electronic energy + Delta-G solvation = -22526.025660 eV Core-core repulsion = 18934.345342 eV Total energy + Delta-G solvation = -3591.680318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01403 -38.68885 -36.79321 -36.56210 -36.52297 -33.28116 -32.89729 -31.99627 -30.74643 -28.30895 -26.00987 -25.00273 -22.96005 -22.12719 -21.20184 -19.77699 -19.30331 -17.41117 -16.74373 -16.32870 -16.15575 -15.80316 -14.88304 -14.78686 -14.50907 -14.29053 -14.15663 -13.76454 -13.34362 -13.11020 -12.60639 -12.45862 -12.03704 -11.88998 -11.87305 -11.62593 -11.50052 -11.40039 -11.08459 -11.05134 -10.93632 -10.83918 -10.54865 -10.28991 -9.68962 -9.42431 -8.98714 -8.90225 -8.81752 -8.53093 -8.29227 -8.09212 -6.10843 -4.19751 0.85334 0.91666 1.75012 2.14995 3.18574 3.21992 3.25136 3.31463 3.33136 3.92702 4.32190 4.35564 4.61494 4.90253 4.96418 5.07685 5.16379 5.19403 5.28133 5.43589 5.46204 5.66472 5.77493 5.99501 6.02019 6.15872 6.32079 6.42763 6.45527 6.56035 6.67952 6.87050 7.07713 7.26663 7.41334 7.46417 7.78411 8.27019 8.31198 8.80909 8.86560 9.47269 10.96947 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.003136 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.098376 B = 8927.312693 C = 9793.022525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.165 3.835 11 N -0.702 5.702 12 C 0.508 3.492 13 O -0.546 6.546 14 C -0.112 4.112 15 C -0.036 4.036 16 C -0.093 4.093 17 C -0.104 4.104 18 C -0.105 4.105 19 C -0.031 4.031 20 Cl -0.056 7.056 21 C -0.013 4.013 22 Cl -0.045 7.045 23 C -0.210 4.210 24 C -0.148 4.148 25 H 0.261 0.739 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.400 0.600 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -11.780 -14.008 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.027 3.973 10 C 0.042 3.958 11 N -0.351 5.351 12 C 0.293 3.707 13 O -0.424 6.424 14 C -0.152 4.152 15 C -0.038 4.038 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.058 4.058 20 Cl -0.027 7.027 21 C -0.041 4.041 22 Cl -0.016 7.016 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.234 0.766 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.007 -12.028 -14.018 19.138 hybrid contribution 0.699 0.863 0.326 1.157 sum 5.706 -11.165 -13.692 18.565 Atomic orbital electron populations 1.69994 1.05896 1.26828 1.48238 1.24995 0.94794 0.98957 0.94310 0.86583 0.80171 0.83856 0.77663 1.19697 1.21046 1.20950 1.20379 0.92852 0.88586 1.51983 0.92122 1.19038 0.98598 0.93923 0.85752 1.20979 0.87279 0.96891 0.90659 1.45928 1.11498 1.60075 1.17554 1.20099 0.89839 0.78532 0.82245 1.90697 1.22428 1.55015 1.74257 1.20788 0.98389 1.02841 0.93136 1.19199 0.98164 0.90911 0.95503 1.21144 0.98417 1.00026 0.91558 1.21145 0.98035 0.94270 0.98734 1.20991 1.00604 0.94157 0.96646 1.20702 1.03356 0.87333 0.94445 1.98378 1.89615 1.15939 1.98745 1.20585 1.03003 0.92741 0.87776 1.98389 1.96196 1.71421 1.35556 1.23022 0.98661 0.95670 1.07423 1.22489 0.92293 1.01082 1.02769 0.92885 0.90989 0.94508 0.76613 0.87613 0.87339 0.84368 0.84437 0.84272 0.91659 0.90356 0.89834 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 12.91 55.43 0.72 -23.20 16 2 C 0.07 1.92 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.50 -12.56 8.63 -34.44 -0.30 -12.85 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 10 C 0.16 3.68 5.50 -4.05 -0.02 3.66 16 11 N -0.70 -13.07 5.47 -60.30 -0.33 -13.40 16 12 C 0.51 9.01 7.60 -10.98 -0.08 8.93 16 13 O -0.55 -11.75 15.95 5.55 0.09 -11.66 16 14 C -0.11 -1.43 5.30 -29.04 -0.15 -1.59 16 15 C -0.04 -0.47 4.43 -104.60 -0.46 -0.94 16 16 C -0.09 -1.02 9.67 -39.58 -0.38 -1.40 16 17 C -0.10 -0.98 10.04 -39.58 -0.40 -1.38 16 18 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 19 C -0.03 -0.38 6.32 -39.47 -0.25 -0.63 16 20 Cl -0.06 -0.65 27.96 -51.86 -1.45 -2.10 16 21 C -0.01 -0.18 6.20 -39.47 -0.24 -0.43 16 22 Cl -0.04 -0.63 26.33 -51.86 -1.37 -2.00 16 23 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16 24 C -0.15 -3.36 9.42 -26.70 -0.25 -3.61 16 25 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 26 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 27 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.40 6.69 8.37 -40.82 -0.34 6.35 16 29 H 0.11 1.20 7.35 -51.93 -0.38 0.81 16 30 H 0.11 1.11 8.00 -51.93 -0.42 0.69 16 31 H 0.14 1.24 8.04 -52.48 -0.42 0.82 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -29.92 351.97 -10.06 -39.97 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.49 Total: 6.01 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.51 Total: -14.03 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.39 Total: -36.60 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -2.82 Total: -4.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.92 -10.06 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431133543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.455 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds