Wall clock time and date at job start Tue Mar 31 2020 15:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48493 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46944 * 300.00376 * 3 2 1 6 6 H 1.48499 * 109.46988 * 59.99911 * 3 2 1 7 7 C 1.37875 * 119.99536 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99686 * 173.55421 * 7 2 1 9 9 C 1.50703 * 120.00170 * 353.55334 * 7 2 1 10 10 C 1.52991 * 115.54903 * 85.40719 * 9 7 2 11 11 N 1.46493 * 109.47539 * 65.13976 * 10 9 7 12 12 C 1.34777 * 120.00442 * 178.26933 * 11 10 9 13 13 O 1.21288 * 119.99818 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00553 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47370 * 179.97438 * 14 12 11 16 16 C 1.38253 * 119.99456 * 100.00659 * 15 14 12 17 17 C 1.38220 * 120.03696 * 179.97438 * 16 15 14 18 18 C 1.38247 * 120.03744 * 0.02562 * 17 16 15 19 19 C 1.38301 * 120.00068 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 120.01808 * 180.02562 * 19 18 17 21 21 C 1.38293 * 120.00550 * 279.98222 * 15 14 12 22 22 Cl 1.73611 * 120.01761 * 0.02562 * 21 15 14 23 23 C 1.53001 * 117.49564 * 231.07603 * 9 7 2 24 24 C 1.52998 * 117.49594 * 299.73245 * 9 7 2 25 25 H 0.97003 * 119.99811 * 5.05801 * 1 2 3 26 26 H 1.09002 * 109.47478 * 305.13791 * 10 9 7 27 27 H 1.09006 * 109.47180 * 185.14231 * 10 9 7 28 28 H 0.97000 * 119.99918 * 358.27662 * 11 10 9 29 29 H 1.09004 * 109.46646 * 60.00106 * 14 12 11 30 30 H 1.08996 * 109.47302 * 300.00875 * 14 12 11 31 31 H 1.08004 * 119.98073 * 0.24747 * 16 15 14 32 32 H 1.07996 * 119.98182 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.00002 * 180.02562 * 18 17 16 34 34 H 1.08999 * 117.49826 * 215.00290 * 23 9 7 35 35 H 1.09000 * 117.50079 * 0.02562 * 23 9 7 36 36 H 1.08995 * 117.50224 * 359.97438 * 24 9 7 37 37 H 1.08999 * 117.49495 * 144.97551 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1517 11 7 1.8110 -3.4583 -2.0335 12 6 1.5598 -4.0347 -3.2256 13 8 0.4155 -4.2448 -3.5685 14 6 2.7006 -4.4173 -4.1330 15 6 2.1540 -5.0389 -5.3924 16 6 2.0518 -4.2853 -6.5470 17 6 1.5511 -4.8547 -7.7027 18 6 1.1516 -6.1782 -7.7052 19 6 1.2532 -6.9334 -6.5511 20 17 0.7522 -8.5956 -6.5539 21 6 1.7553 -6.3631 -5.3933 22 17 1.8835 -7.3097 -3.9437 23 6 1.7470 -3.4738 1.2150 24 6 0.4418 -2.7017 1.4228 25 1 -0.4850 0.8368 -0.0741 26 1 0.0753 -2.3456 -1.6489 27 1 0.1074 -3.9703 -0.9225 28 1 2.7261 -3.2900 -1.7594 29 1 3.3447 -5.1345 -3.6242 30 1 3.2769 -3.5277 -4.3869 31 1 2.3674 -3.2524 -6.5471 32 1 1.4720 -4.2654 -8.6042 33 1 0.7608 -6.6226 -8.6087 34 1 1.6725 -4.5387 0.9945 35 1 2.6082 -3.1766 1.8133 36 1 0.4449 -1.8968 2.1578 37 1 -0.4917 -3.2582 1.3390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431133543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:44 Heat of formation + Delta-G solvation = -26.503617 kcal Electronic energy + Delta-G solvation = -22526.718881 eV Core-core repulsion = 18934.345342 eV Total energy + Delta-G solvation = -3592.373539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09965 -39.95696 -38.43227 -37.54921 -37.50075 -34.88561 -33.97974 -33.84117 -31.58400 -29.48667 -27.76409 -26.69181 -23.80068 -23.17111 -22.88693 -21.34142 -20.96454 -18.53141 -18.08624 -17.72689 -17.28336 -16.88002 -16.61965 -16.28040 -16.00887 -15.48073 -15.13211 -15.06637 -14.67242 -14.35115 -14.14593 -13.83264 -13.48375 -13.13756 -12.91499 -12.90259 -12.84666 -12.81735 -12.49701 -12.36981 -12.30422 -12.05103 -11.95227 -11.82461 -11.47394 -10.93210 -10.83382 -10.45611 -10.07205 -9.79646 -9.77357 -9.69749 -8.08113 -6.21527 -0.00274 0.05764 0.83017 1.23766 1.42956 1.47239 1.56332 1.79806 2.27779 2.44192 2.66583 3.20435 3.42965 3.51081 3.82737 4.01579 4.10838 4.20580 4.26691 4.30453 4.37700 4.55921 4.61191 4.66074 4.73721 4.77808 4.98451 4.99399 5.06928 5.19935 5.27117 5.32940 5.59229 5.61051 5.66616 5.70891 5.80236 6.38267 6.80985 6.87321 7.44357 7.48494 8.99648 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.003136 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.098376 B = 8927.312693 C = 9793.022525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.008 3.992 10 C 0.183 3.817 11 N -0.699 5.699 12 C 0.507 3.493 13 O -0.586 6.586 14 C -0.101 4.101 15 C -0.059 4.059 16 C -0.098 4.098 17 C -0.096 4.096 18 C -0.102 4.102 19 C -0.048 4.048 20 Cl -0.058 7.058 21 C -0.035 4.035 22 Cl -0.061 7.061 23 C -0.177 4.177 24 C -0.162 4.162 25 H 0.258 0.742 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.411 0.589 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 -11.643 -15.562 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.008 3.992 10 C 0.058 3.942 11 N -0.349 5.349 12 C 0.295 3.705 13 O -0.467 6.467 14 C -0.140 4.140 15 C -0.060 4.060 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.076 4.076 20 Cl -0.029 7.029 21 C -0.062 4.062 22 Cl -0.032 7.032 23 C -0.214 4.214 24 C -0.201 4.201 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.247 0.753 29 H 0.139 0.861 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.191 0.809 33 H 0.182 0.818 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.950 -11.904 -15.574 20.798 hybrid contribution 0.077 0.787 0.743 1.085 sum 7.028 -11.116 -14.831 19.823 Atomic orbital electron populations 1.70127 1.07369 1.27234 1.49937 1.25717 0.95410 1.02119 0.94386 0.85624 0.79599 0.80040 0.77063 1.18301 1.21256 1.21453 1.20696 0.93217 0.89378 1.50700 0.91514 1.19071 0.99424 0.94494 0.86237 1.20485 0.87868 0.95183 0.90648 1.45818 1.11013 1.60349 1.17727 1.20933 0.90656 0.76995 0.81949 1.90674 1.24672 1.56385 1.74986 1.20771 0.96507 1.04523 0.92210 1.19359 0.99409 0.90982 0.96255 1.21517 0.97915 1.00867 0.91343 1.21592 0.96166 0.94118 0.99511 1.21394 0.99576 0.94417 0.96716 1.20953 1.03987 0.87645 0.94983 1.98371 1.89650 1.16123 1.98764 1.20815 1.04457 0.93270 0.87708 1.98371 1.96377 1.71870 1.36606 1.23002 0.97335 0.96170 1.04885 1.22426 0.93705 1.01444 1.02485 0.93290 0.95263 0.95277 0.75325 0.86088 0.84261 0.82322 0.80868 0.81750 0.89598 0.89420 0.91815 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.83 12.91 21.45 0.28 -50.55 16 2 C 0.02 1.26 5.39 84.65 0.46 1.72 16 3 Si 0.95 41.12 29.55 68.60 2.03 43.15 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.50 -24.91 8.63 25.60 0.22 -24.69 16 8 H 0.07 3.17 7.82 -2.91 -0.02 3.14 16 9 C 0.01 0.39 1.38 -52.93 -0.07 0.32 16 10 C 0.18 8.28 5.50 86.38 0.48 8.76 16 11 N -0.70 -25.64 5.47 -463.07 -2.54 -28.17 16 12 C 0.51 17.67 7.60 87.66 0.67 18.34 16 13 O -0.59 -25.48 15.95 -3.05 -0.05 -25.53 16 14 C -0.10 -2.40 5.30 29.10 0.15 -2.25 16 15 C -0.06 -1.43 4.43 -19.85 -0.09 -1.52 16 16 C -0.10 -1.89 9.67 22.27 0.22 -1.67 16 17 C -0.10 -1.49 10.04 22.27 0.22 -1.27 16 18 C -0.10 -1.81 9.83 22.29 0.22 -1.60 16 19 C -0.05 -1.13 6.32 22.34 0.14 -0.99 16 20 Cl -0.06 -1.31 27.96 -2.72 -0.08 -1.39 16 21 C -0.03 -0.93 6.20 22.34 0.14 -0.79 16 22 Cl -0.06 -1.71 26.33 -2.72 -0.07 -1.78 16 23 C -0.18 -6.97 9.96 30.62 0.30 -6.66 16 24 C -0.16 -7.41 9.42 30.62 0.29 -7.12 16 25 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 26 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.34 8.09 -2.38 -0.02 1.32 16 28 H 0.41 13.12 8.37 -92.71 -0.78 12.35 16 29 H 0.12 2.50 7.35 -2.39 -0.02 2.49 16 30 H 0.14 2.42 8.00 -2.39 -0.02 2.40 16 31 H 0.16 2.30 8.04 -2.91 -0.02 2.27 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -65.98 351.97 3.24 -62.74 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.33 Total: 20.97 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 3.34 Total: -19.43 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.26 Total: -78.72 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 17 Polarization: -3.02 SS G_CDS: -0.15 Total: -3.17 kcal Total: -65.98 3.24 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431133543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.235 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds