Wall clock time and date at job start Tue Mar 31 2020 15:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.50705 * 109.47122 * 180.02562 * 14 12 11 16 16 C 1.38333 * 120.00890 * 269.72844 * 15 14 12 17 17 Cl 1.73591 * 120.01018 * 359.97438 * 16 15 14 18 18 C 1.38366 * 119.97861 * 179.69963 * 16 15 14 19 19 C 1.38213 * 120.01668 * 0.59181 * 18 16 15 20 20 C 1.38223 * 120.02576 * 359.68543 * 19 18 16 21 21 C 1.38330 * 120.01456 * 90.00006 * 15 14 12 22 22 Cl 1.73606 * 120.00659 * 359.97438 * 21 15 14 23 23 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 24 24 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 25 25 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 26 26 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 27 27 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 28 28 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 29 29 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 30 30 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 31 31 H 1.08008 * 119.98907 * 180.31914 * 18 16 15 32 32 H 1.08002 * 119.98998 * 179.69886 * 19 18 16 33 33 H 1.08004 * 119.99590 * 180.02562 * 20 19 18 34 34 H 1.09003 * 117.49648 * 359.97438 * 23 9 7 35 35 H 1.08991 * 117.50066 * 145.01997 * 23 9 7 36 36 H 1.08996 * 117.49909 * 214.98045 * 24 9 7 37 37 H 1.09006 * 117.50020 * 359.97109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0473 -4.6260 5.5961 16 6 2.8953 -3.7773 6.6778 17 17 3.0887 -2.0645 6.4715 18 6 2.5836 -4.2935 7.9232 19 6 2.4360 -5.6577 8.0890 20 6 2.5934 -6.5066 7.0096 21 6 2.8992 -5.9912 5.7626 22 17 3.0960 -7.0576 4.4069 23 6 1.5730 -3.5796 -0.9302 24 6 0.2452 -2.8210 -1.0000 25 1 -0.4850 0.8369 -0.0732 26 1 0.3751 -2.1632 2.0411 27 1 0.3015 -3.8512 1.4812 28 1 3.0164 -3.0733 1.8316 29 1 3.9649 -4.7929 3.6769 30 1 3.9584 -3.1474 4.3556 31 1 2.4598 -3.6305 8.7668 32 1 2.1974 -6.0605 9.0622 33 1 2.4777 -7.5725 7.1396 34 1 2.3246 -3.3491 -1.6853 35 1 1.5428 -4.6172 -0.5978 36 1 -0.6578 -3.3599 -0.7135 37 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431135298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:47 Heat of formation + Delta-G solvation = -9.232484 kcal Electronic energy + Delta-G solvation = -22746.213560 eV Core-core repulsion = 19154.588954 eV Total energy + Delta-G solvation = -3591.624607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04183 -38.66614 -36.83007 -36.65411 -36.33015 -33.26676 -32.98729 -31.95638 -30.77321 -28.26989 -26.00524 -24.96509 -23.00251 -22.12148 -21.14477 -19.76780 -19.27458 -17.47546 -16.73189 -16.42715 -16.15056 -15.68630 -14.82003 -14.74215 -14.48462 -14.44016 -14.07141 -13.69310 -13.36322 -13.01196 -12.55085 -12.49682 -12.33770 -12.21601 -11.83717 -11.60688 -11.43707 -11.21735 -11.00016 -10.95098 -10.93467 -10.85014 -10.53492 -10.23365 -9.62108 -9.39240 -9.04272 -8.89023 -8.85598 -8.49229 -8.25545 -8.07818 -6.07433 -4.17254 0.84225 0.89307 1.76477 2.19993 3.19855 3.22927 3.25214 3.33561 3.34756 3.93097 4.34868 4.39237 4.64116 4.65411 4.99788 5.17294 5.20362 5.20658 5.28883 5.37188 5.47082 5.68855 5.86380 5.98034 5.99710 6.04479 6.34612 6.36356 6.48384 6.57507 6.71204 6.88416 7.12552 7.28554 7.40356 7.53612 7.80988 8.28456 8.34009 8.83206 8.87689 9.49938 10.99702 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.003892 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.503385 B = 7192.899023 C = 8516.237641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.165 3.835 11 N -0.702 5.702 12 C 0.513 3.487 13 O -0.547 6.547 14 C -0.119 4.119 15 C -0.038 4.038 16 C -0.014 4.014 17 Cl -0.051 7.051 18 C -0.106 4.106 19 C -0.101 4.101 20 C -0.107 4.107 21 C -0.013 4.013 22 Cl -0.055 7.055 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.261 0.739 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.401 0.599 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.086 -11.236 14.283 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.024 3.976 10 C 0.042 3.958 11 N -0.351 5.351 12 C 0.298 3.702 13 O -0.425 6.425 14 C -0.158 4.158 15 C -0.040 4.040 16 C -0.041 4.041 17 Cl -0.021 7.021 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.040 4.040 22 Cl -0.026 7.026 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.160 -11.182 14.551 19.698 hybrid contribution 0.765 1.157 -0.465 1.463 sum 7.925 -10.025 14.086 19.019 Atomic orbital electron populations 1.69990 1.05881 1.26851 1.48300 1.24979 0.94797 0.98924 0.94313 0.86647 0.79978 0.83632 0.78104 1.20687 1.21187 1.19762 1.20342 0.92610 0.88559 1.52217 0.92200 1.19044 0.99372 0.93308 0.85925 1.20987 0.84027 0.97874 0.92891 1.45926 1.11359 1.62818 1.14964 1.19994 0.89961 0.78158 0.82093 1.90678 1.30548 1.53577 1.67727 1.20855 0.98594 1.03886 0.92514 1.18994 0.99386 0.91075 0.94540 1.20651 1.03484 0.85555 0.94385 1.98400 1.95520 1.10691 1.97536 1.21111 0.99575 0.95950 0.95871 1.21013 0.99581 0.92343 0.98960 1.21091 0.99752 1.00998 0.90752 1.20605 1.03809 0.90061 0.89558 1.98381 1.95552 1.64194 1.44490 1.23013 1.00698 0.95579 1.05503 1.22461 0.90782 1.01309 1.03481 0.92884 0.91482 0.94219 0.76515 0.87414 0.87231 0.84349 0.84231 0.84387 0.90407 0.91752 0.91871 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.24 12.65 55.43 0.70 -23.54 16 2 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.50 -12.77 8.59 -34.44 -0.30 -13.06 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 10 C 0.17 3.75 5.50 -4.04 -0.02 3.73 16 11 N -0.70 -13.58 5.48 -60.29 -0.33 -13.91 16 12 C 0.51 9.52 7.82 -10.98 -0.09 9.43 16 13 O -0.55 -12.02 16.03 5.55 0.09 -11.93 16 14 C -0.12 -1.69 5.04 -29.03 -0.15 -1.84 16 15 C -0.04 -0.53 4.38 -104.55 -0.46 -0.99 16 16 C -0.01 -0.18 6.31 -39.50 -0.25 -0.43 16 17 Cl -0.05 -0.69 27.29 -51.86 -1.42 -2.11 16 18 C -0.11 -1.12 9.83 -39.54 -0.39 -1.51 16 19 C -0.10 -0.91 10.04 -39.60 -0.40 -1.31 16 20 C -0.11 -1.09 9.83 -39.54 -0.39 -1.48 16 21 C -0.01 -0.17 6.31 -39.50 -0.25 -0.42 16 22 Cl -0.06 -0.69 27.30 -51.86 -1.42 -2.10 16 23 C -0.21 -4.39 9.96 -26.69 -0.27 -4.66 16 24 C -0.14 -3.27 9.14 -26.70 -0.24 -3.52 16 25 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 28 H 0.40 7.06 8.33 -40.82 -0.34 6.72 16 29 H 0.11 1.33 6.90 -51.93 -0.36 0.97 16 30 H 0.11 1.43 6.89 -51.93 -0.36 1.08 16 31 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -30.02 350.52 -10.03 -40.05 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.40 Total: 6.59 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.52 Total: -13.85 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.37 Total: -37.45 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -2.83 Total: -4.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.02 -10.03 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431135298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.820 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds