Wall clock time and date at job start Tue Mar 31 2020 15:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48504 * 109.47025 * 270.00008 * 3 2 1 5 5 H 1.48493 * 109.47332 * 30.00302 * 3 2 1 6 6 H 1.48499 * 109.47076 * 150.00346 * 3 2 1 7 7 C 1.37877 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00428 * 175.13615 * 7 2 1 9 9 C 1.50704 * 119.99726 * 355.41881 * 7 2 1 10 10 C 1.53000 * 115.54588 * 274.92551 * 9 7 2 11 11 N 1.46498 * 109.47299 * 294.81766 * 10 9 7 12 12 C 1.34777 * 119.99966 * 184.79547 * 11 10 9 13 13 O 1.21285 * 120.00147 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.50705 * 109.47122 * 180.02562 * 14 12 11 16 16 C 1.38333 * 120.00890 * 269.72844 * 15 14 12 17 17 Cl 1.73591 * 120.01018 * 359.97438 * 16 15 14 18 18 C 1.38366 * 119.97861 * 179.69963 * 16 15 14 19 19 C 1.38213 * 120.01668 * 0.59181 * 18 16 15 20 20 C 1.38223 * 120.02576 * 359.68543 * 19 18 16 21 21 C 1.38330 * 120.01456 * 90.00006 * 15 14 12 22 22 Cl 1.73606 * 120.00659 * 359.97438 * 21 15 14 23 23 C 1.53001 * 117.50018 * 129.26227 * 9 7 2 24 24 C 1.52994 * 117.50192 * 60.59946 * 9 7 2 25 25 H 0.97004 * 120.00173 * 4.99858 * 1 2 3 26 26 H 1.09001 * 109.47069 * 54.82062 * 10 9 7 27 27 H 1.09005 * 109.47200 * 174.81939 * 10 9 7 28 28 H 0.96999 * 120.00541 * 4.80062 * 11 10 9 29 29 H 1.09003 * 109.47069 * 299.99723 * 14 12 11 30 30 H 1.09000 * 109.47431 * 60.00514 * 14 12 11 31 31 H 1.08008 * 119.98907 * 180.31914 * 18 16 15 32 32 H 1.08002 * 119.98998 * 179.69886 * 19 18 16 33 33 H 1.08004 * 119.99590 * 180.02562 * 20 19 18 34 34 H 1.09003 * 117.49648 * 359.97438 * 23 9 7 35 35 H 1.08991 * 117.50066 * 145.01997 * 23 9 7 36 36 H 1.08996 * 117.49909 * 214.98045 * 24 9 7 37 37 H 1.09006 * 117.50020 * 359.97109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0816 -1.1958 -0.0798 9 6 1.2546 -2.4971 0.1031 10 6 0.9189 -2.9539 1.5242 11 7 2.1581 -3.2482 2.2481 12 6 2.1055 -3.7618 3.4931 13 8 1.0323 -3.9808 4.0139 14 6 3.3803 -4.0639 4.2380 15 6 3.0473 -4.6260 5.5961 16 6 2.8953 -3.7773 6.6778 17 17 3.0887 -2.0645 6.4715 18 6 2.5836 -4.2935 7.9232 19 6 2.4360 -5.6577 8.0890 20 6 2.5934 -6.5066 7.0096 21 6 2.8992 -5.9912 5.7626 22 17 3.0960 -7.0576 4.4069 23 6 1.5730 -3.5796 -0.9302 24 6 0.2452 -2.8210 -1.0000 25 1 -0.4850 0.8369 -0.0732 26 1 0.3751 -2.1632 2.0411 27 1 0.3015 -3.8512 1.4812 28 1 3.0164 -3.0733 1.8316 29 1 3.9649 -4.7929 3.6769 30 1 3.9584 -3.1474 4.3556 31 1 2.4598 -3.6305 8.7668 32 1 2.1974 -6.0605 9.0622 33 1 2.4777 -7.5725 7.1396 34 1 2.3246 -3.3491 -1.6853 35 1 1.5428 -4.6172 -0.5978 36 1 -0.6578 -3.3599 -0.7135 37 1 0.1232 -2.0914 -1.8007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431135298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:46 Heat of formation + Delta-G solvation = -25.258014 kcal Electronic energy + Delta-G solvation = -22746.908480 eV Core-core repulsion = 19154.588954 eV Total energy + Delta-G solvation = -3592.319526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16318 -39.98580 -38.42659 -37.77837 -37.26610 -34.93041 -34.05097 -33.91191 -31.61195 -29.50179 -27.79448 -26.69923 -23.85968 -23.17373 -22.86560 -21.38648 -20.99081 -18.57203 -18.15463 -17.79222 -17.40366 -16.88272 -16.62895 -16.14390 -16.01789 -15.50250 -15.34649 -15.05484 -14.59436 -14.36254 -14.06899 -13.89063 -13.49801 -13.38982 -13.14067 -13.12490 -12.92864 -12.81602 -12.49079 -12.37388 -12.10883 -12.02825 -11.87707 -11.85640 -11.41081 -10.98973 -10.94307 -10.43937 -10.07477 -9.84627 -9.79254 -9.72663 -8.09165 -6.23191 -0.00711 0.01570 0.83836 1.27052 1.41211 1.44482 1.52033 1.72788 2.24505 2.42054 2.60830 3.19101 3.41950 3.51329 3.74976 3.88852 4.00440 4.21396 4.25537 4.35409 4.39830 4.42483 4.55387 4.65032 4.67724 4.73666 4.99618 5.04195 5.08228 5.09693 5.21028 5.28490 5.55927 5.60139 5.60647 5.70684 5.78543 6.36944 6.75188 6.85145 7.37046 7.46716 8.97840 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.003892 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.503385 B = 7192.899023 C = 8516.237641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.065 0.935 9 C 0.003 3.997 10 C 0.183 3.817 11 N -0.700 5.700 12 C 0.514 3.486 13 O -0.582 6.582 14 C -0.108 4.108 15 C -0.065 4.065 16 C -0.032 4.032 17 Cl -0.067 7.067 18 C -0.109 4.109 19 C -0.087 4.087 20 C -0.107 4.107 21 C -0.029 4.029 22 Cl -0.061 7.061 23 C -0.177 4.177 24 C -0.154 4.154 25 H 0.258 0.742 26 H 0.025 0.975 27 H 0.036 0.964 28 H 0.410 0.590 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.592 -12.568 15.714 22.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.003 3.997 10 C 0.059 3.941 11 N -0.350 5.350 12 C 0.301 3.699 13 O -0.463 6.463 14 C -0.147 4.147 15 C -0.067 4.067 16 C -0.059 4.059 17 Cl -0.038 7.038 18 C -0.127 4.127 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.056 4.056 22 Cl -0.032 7.032 23 C -0.214 4.214 24 C -0.192 4.192 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.246 0.754 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.181 0.819 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.711 -12.524 15.976 22.090 hybrid contribution 0.273 1.489 -0.837 1.730 sum 8.984 -11.035 15.139 20.777 Atomic orbital electron populations 1.70116 1.07252 1.27234 1.49940 1.25681 0.95434 1.01991 0.94417 0.85732 0.78987 0.79902 0.78135 1.20175 1.21924 1.18738 1.20664 0.92974 0.89465 1.50953 0.91723 1.19073 1.00149 0.93975 0.86528 1.20523 0.85064 0.96116 0.92438 1.45836 1.10607 1.63097 1.15442 1.20697 0.91057 0.76696 0.81455 1.90651 1.32432 1.54853 1.68359 1.20779 0.96191 1.04932 0.92845 1.19042 1.01442 0.91911 0.94289 1.20889 1.04803 0.84774 0.95466 1.98388 1.95706 1.12019 1.97651 1.21489 0.98547 0.97186 0.95487 1.21507 0.97224 0.91433 1.00301 1.21500 0.98417 1.02610 0.89985 1.20832 1.04637 0.89693 0.90431 1.98373 1.95640 1.64138 1.45022 1.22991 0.98867 0.95869 1.03640 1.22377 0.92075 1.01809 1.02956 0.93273 0.95704 0.94569 0.75412 0.85589 0.86293 0.82209 0.80188 0.81870 0.89600 0.89516 0.91442 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.58 12.65 21.45 0.27 -51.31 16 2 C 0.03 1.35 5.43 84.65 0.46 1.81 16 3 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.50 -25.64 8.59 25.60 0.22 -25.42 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 9 C 0.00 0.16 1.47 -52.93 -0.08 0.08 16 10 C 0.18 8.45 5.50 86.38 0.48 8.93 16 11 N -0.70 -27.04 5.48 -463.05 -2.54 -29.57 16 12 C 0.51 19.02 7.82 87.66 0.69 19.71 16 13 O -0.58 -25.90 16.03 -3.04 -0.05 -25.95 16 14 C -0.11 -3.00 5.04 29.10 0.15 -2.85 16 15 C -0.06 -1.73 4.38 -19.82 -0.09 -1.82 16 16 C -0.03 -0.81 6.31 22.32 0.14 -0.67 16 17 Cl -0.07 -1.79 27.29 -2.72 -0.07 -1.87 16 18 C -0.11 -2.01 9.83 22.29 0.22 -1.79 16 19 C -0.09 -1.25 10.04 22.26 0.22 -1.03 16 20 C -0.11 -1.86 9.83 22.29 0.22 -1.65 16 21 C -0.03 -0.69 6.31 22.32 0.14 -0.55 16 22 Cl -0.06 -1.43 27.30 -2.72 -0.07 -1.50 16 23 C -0.18 -7.10 9.96 30.62 0.30 -6.79 16 24 C -0.15 -7.13 9.14 30.62 0.28 -6.85 16 25 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 26 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 28 H 0.41 14.15 8.33 -92.71 -0.77 13.37 16 29 H 0.13 2.96 6.90 -2.39 -0.02 2.95 16 30 H 0.12 3.04 6.89 -2.39 -0.02 3.02 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.06 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -65.81 350.52 3.25 -62.56 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.33 Total: 22.17 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.35 Total: -18.89 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.27 Total: -80.89 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.15 Total: -3.37 kcal Total: -65.81 3.25 -62.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431135298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.299 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds