Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46774 * 2 1 4 4 C 1.38177 * 120.00380 * 265.01868 * 3 2 1 5 5 C 1.38319 * 120.05556 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.96427 * 180.02562 * 5 4 3 7 7 C 1.38499 * 120.06984 * 359.97438 * 5 4 3 8 8 Cl 1.73610 * 119.99004 * 180.02562 * 7 5 4 9 9 C 1.38232 * 120.02079 * 359.73095 * 7 5 4 10 10 C 1.38701 * 120.01485 * 85.00144 * 3 2 1 11 11 O 1.35930 * 120.03391 * 0.02562 * 10 3 2 12 12 C 1.42898 * 116.99672 * 180.02562 * 11 10 3 13 13 C 1.53002 * 109.46622 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 55.00159 * 13 12 11 15 15 C 1.47194 * 109.47253 * 295.00098 * 13 12 11 16 16 N 5.33570 * 62.24504 * 79.06750 * 2 1 3 17 17 C 1.52997 * 109.46817 * 174.99979 * 13 12 11 18 18 C 1.50705 * 109.47390 * 184.99865 * 17 13 12 19 19 H 1.08000 * 119.99498 * 0.02562 * 18 17 13 20 20 C 1.37870 * 120.00441 * 180.02562 * 18 17 13 21 21 N 1.31518 * 120.00253 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99813 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46539 * 90.00506 * 22 20 18 24 24 H 1.48496 * 109.46783 * 210.00191 * 22 20 18 25 25 H 1.48494 * 109.47124 * 330.00366 * 22 20 18 26 26 H 1.09002 * 109.47014 * 300.00058 * 1 2 3 27 27 H 1.08993 * 109.47479 * 60.00354 * 1 2 3 28 28 H 1.09004 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47350 * 239.99635 * 2 1 3 30 30 H 1.09000 * 109.47090 * 119.99547 * 2 1 3 31 31 H 1.08000 * 119.97623 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.02865 * 180.27365 * 9 7 5 33 33 H 1.09000 * 109.47249 * 60.00161 * 12 11 10 34 34 H 1.08996 * 109.47475 * 299.99705 * 12 11 10 35 35 H 1.09001 * 109.47630 * 305.00128 * 17 13 12 36 36 H 1.09004 * 109.47346 * 65.00258 * 17 13 12 37 37 H 0.96996 * 119.99949 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0377 -1.1921 5 6 2.8211 3.3420 -1.1934 6 17 3.2322 4.1149 -2.6925 7 6 2.9537 4.0323 0.0000 8 17 3.5314 5.6695 -0.0041 9 6 2.6204 3.4202 1.1937 10 6 2.1649 2.1099 1.1964 11 8 1.8424 1.5041 2.3698 12 6 2.0032 2.2739 3.5629 13 6 1.5933 1.4313 4.7724 14 1 2.1605 0.5005 4.7759 15 6 0.1548 1.1289 4.6949 16 7 -0.9547 0.8955 4.6361 17 6 1.8823 2.2096 6.0576 18 6 1.5940 1.3347 7.2504 19 1 1.2404 0.3245 7.1061 20 6 1.7816 1.8239 8.5256 21 7 1.5305 1.0602 9.5665 22 14 2.3940 3.5711 8.7750 23 1 1.2342 4.4947 8.8590 24 1 3.1783 3.6456 10.0338 25 1 3.2560 3.9615 7.6307 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2566 1.5014 -2.1237 32 1 2.7195 3.9599 2.1240 33 1 1.3742 3.1625 3.5095 34 1 3.0464 2.5728 3.6647 35 1 2.9299 2.5104 6.0724 36 1 1.2492 3.0960 6.0958 37 1 1.6628 1.4043 10.4637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432249592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -21.691828 kcal Electronic energy + Delta-G solvation = -22270.994802 eV Core-core repulsion = 18678.829918 eV Total energy + Delta-G solvation = -3592.164884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72786 -38.40287 -36.94061 -36.75401 -36.17728 -34.17770 -33.92128 -32.16344 -30.50852 -29.37477 -27.79193 -24.69231 -24.09316 -22.40920 -21.78014 -21.25076 -18.42911 -17.53873 -17.15990 -16.66404 -16.51773 -15.61726 -15.28052 -14.71068 -14.28388 -14.20156 -14.02761 -13.90178 -13.52042 -13.33307 -13.01849 -12.67495 -12.61306 -12.32144 -12.15312 -12.11722 -11.81746 -11.56625 -11.52044 -11.38211 -11.28072 -11.07129 -11.04787 -10.85860 -10.65523 -10.45765 -10.24183 -9.98571 -9.48010 -9.19851 -8.72051 -8.35540 -6.20684 -4.23215 0.66769 0.81248 1.58115 1.94539 2.90579 3.10791 3.19580 3.25783 3.28438 3.44969 3.51115 4.27471 4.28570 4.41046 4.45517 4.62749 4.88530 4.97615 5.02529 5.13166 5.16271 5.20858 5.24252 5.39586 5.42217 5.51768 5.63458 5.68090 5.83479 5.87802 6.03884 6.08937 6.12028 6.24797 6.73607 6.89766 7.06562 7.48642 8.24008 8.30440 8.81695 9.37653 10.92056 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003219 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.191914 B = 8695.587898 C =10263.261426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.098 4.098 4 C -0.061 4.061 5 C -0.070 4.070 6 Cl -0.057 7.057 7 C 0.007 3.993 8 Cl -0.049 7.049 9 C -0.191 4.191 10 C 0.161 3.839 11 O -0.298 6.298 12 C 0.057 3.943 13 C 0.023 3.977 14 H 0.120 0.880 15 C 0.239 3.761 16 N -0.455 5.455 17 C -0.002 4.002 18 C -0.532 4.532 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.262 1.262 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 4.653 -23.653 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.100 4.100 4 C -0.080 4.080 5 C -0.098 4.098 6 Cl -0.028 7.028 7 C -0.021 4.021 8 Cl -0.019 7.019 9 C -0.211 4.211 10 C 0.113 3.887 11 O -0.211 6.211 12 C -0.019 4.019 13 C 0.002 3.998 14 H 0.138 0.862 15 C -0.079 4.079 16 N -0.132 5.132 17 C -0.041 4.041 18 C -0.570 4.570 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.187 1.187 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.090 4.307 -23.611 24.347 hybrid contribution 0.898 1.520 0.408 1.812 sum 4.987 5.827 -23.204 24.438 Atomic orbital electron populations 1.21726 0.94332 1.02073 1.02257 1.20412 0.96478 0.90899 1.03495 1.19330 1.03110 0.97952 0.89569 1.20704 0.97066 0.91894 0.98301 1.20534 1.08230 0.94530 0.86508 1.98373 1.92247 1.80927 1.31217 1.20432 1.01249 0.87476 0.92954 1.98396 1.86795 1.17896 1.98850 1.21152 1.06543 0.95184 0.98204 1.18721 0.93188 0.90119 0.86641 1.86189 1.80869 1.41436 1.12563 1.23234 1.02476 0.94761 0.81392 1.19003 0.84146 1.02027 0.94632 0.86186 1.28707 0.94760 0.92835 0.91599 1.81016 1.12907 1.09171 1.10060 1.19646 0.98116 0.95991 0.90334 1.20923 1.46367 1.00830 0.88831 0.90555 1.24967 0.94532 0.97520 0.95891 1.69891 1.47997 1.36606 0.98533 0.86838 0.79496 0.85146 0.78201 1.20133 1.21071 1.18692 0.92085 0.92856 0.92142 0.90831 0.89746 0.83555 0.83102 0.90992 0.89524 0.93993 0.95757 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.69 5.79 -27.88 -0.16 -0.86 16 3 C -0.10 -1.01 5.15 -104.47 -0.54 -1.54 16 4 C -0.06 -0.56 9.46 -39.57 -0.37 -0.93 16 5 C -0.07 -0.72 6.32 -39.46 -0.25 -0.97 16 6 Cl -0.06 -0.54 27.95 -51.86 -1.45 -1.99 16 7 C 0.01 0.07 6.32 -39.49 -0.25 -0.18 16 8 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 9 C -0.19 -2.07 8.82 -39.40 -0.35 -2.42 16 10 C 0.16 1.84 6.66 -39.23 -0.26 1.58 16 11 O -0.30 -3.76 9.01 -19.52 -0.18 -3.94 16 12 C 0.06 0.71 4.09 37.16 0.15 0.86 16 13 C 0.02 0.38 2.45 -93.41 -0.23 0.15 16 14 H 0.12 1.84 8.14 -51.93 -0.42 1.41 16 15 C 0.24 4.59 13.71 -20.78 -0.28 4.30 16 16 N -0.46 -9.70 18.53 42.13 0.78 -8.92 16 17 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 18 C -0.53 -13.61 9.15 -34.44 -0.32 -13.93 16 19 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 22 Si 0.88 19.72 27.47 -169.99 -4.67 15.06 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.26 -5.38 6.54 56.52 0.37 -5.01 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.05 -51.93 -0.42 0.11 16 30 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 31 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.15 1.46 6.30 -52.48 -0.33 1.13 16 33 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 34 H 0.09 0.88 7.67 -51.93 -0.40 0.49 16 35 H 0.04 0.76 7.20 -51.93 -0.37 0.39 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -29.67 351.30 -7.98 -37.66 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.40 Total: -2.63 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.68 Total: -13.24 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 1.55 Total: -34.25 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.18 Total: -3.94 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.06 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.90 Total: -3.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.67 -7.98 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432249592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.964 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds