Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46774 * 2 1 4 4 C 1.38177 * 120.00380 * 265.01868 * 3 2 1 5 5 C 1.38319 * 120.05556 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.96427 * 180.02562 * 5 4 3 7 7 C 1.38499 * 120.06984 * 359.97438 * 5 4 3 8 8 Cl 1.73610 * 119.99004 * 180.02562 * 7 5 4 9 9 C 1.38232 * 120.02079 * 359.73095 * 7 5 4 10 10 C 1.38701 * 120.01485 * 85.00144 * 3 2 1 11 11 O 1.35930 * 120.03391 * 0.02562 * 10 3 2 12 12 C 1.42898 * 116.99672 * 180.02562 * 11 10 3 13 13 C 1.53002 * 109.46622 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47070 * 55.00159 * 13 12 11 15 15 C 1.47194 * 109.47253 * 295.00098 * 13 12 11 16 16 N 5.33570 * 62.24504 * 79.06750 * 2 1 3 17 17 C 1.52997 * 109.46817 * 174.99979 * 13 12 11 18 18 C 1.50705 * 109.47390 * 184.99865 * 17 13 12 19 19 H 1.08000 * 119.99498 * 0.02562 * 18 17 13 20 20 C 1.37870 * 120.00441 * 180.02562 * 18 17 13 21 21 N 1.31518 * 120.00253 * 180.02562 * 20 18 17 22 22 Si 1.86808 * 119.99813 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46539 * 90.00506 * 22 20 18 24 24 H 1.48496 * 109.46783 * 210.00191 * 22 20 18 25 25 H 1.48494 * 109.47124 * 330.00366 * 22 20 18 26 26 H 1.09002 * 109.47014 * 300.00058 * 1 2 3 27 27 H 1.08993 * 109.47479 * 60.00354 * 1 2 3 28 28 H 1.09004 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47350 * 239.99635 * 2 1 3 30 30 H 1.09000 * 109.47090 * 119.99547 * 2 1 3 31 31 H 1.08000 * 119.97623 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.02865 * 180.27365 * 9 7 5 33 33 H 1.09000 * 109.47249 * 60.00161 * 12 11 10 34 34 H 1.08996 * 109.47475 * 299.99705 * 12 11 10 35 35 H 1.09001 * 109.47630 * 305.00128 * 17 13 12 36 36 H 1.09004 * 109.47346 * 65.00258 * 17 13 12 37 37 H 0.96996 * 119.99949 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3605 2.0377 -1.1921 5 6 2.8211 3.3420 -1.1934 6 17 3.2322 4.1149 -2.6925 7 6 2.9537 4.0323 0.0000 8 17 3.5314 5.6695 -0.0041 9 6 2.6204 3.4202 1.1937 10 6 2.1649 2.1099 1.1964 11 8 1.8424 1.5041 2.3698 12 6 2.0032 2.2739 3.5629 13 6 1.5933 1.4313 4.7724 14 1 2.1605 0.5005 4.7759 15 6 0.1548 1.1289 4.6949 16 7 -0.9547 0.8955 4.6361 17 6 1.8823 2.2096 6.0576 18 6 1.5940 1.3347 7.2504 19 1 1.2404 0.3245 7.1061 20 6 1.7816 1.8239 8.5256 21 7 1.5305 1.0602 9.5665 22 14 2.3940 3.5711 8.7750 23 1 1.2342 4.4947 8.8590 24 1 3.1783 3.6456 10.0338 25 1 3.2560 3.9615 7.6307 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2566 1.5014 -2.1237 32 1 2.7195 3.9599 2.1240 33 1 1.3742 3.1625 3.5095 34 1 3.0464 2.5728 3.6647 35 1 2.9299 2.5104 6.0724 36 1 1.2492 3.0960 6.0958 37 1 1.6628 1.4043 10.4637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432249592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -36.498437 kcal Electronic energy + Delta-G solvation = -22271.636865 eV Core-core repulsion = 18678.829918 eV Total energy + Delta-G solvation = -3592.806947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55908 -39.34205 -38.02263 -37.56244 -37.25671 -35.62434 -34.89708 -33.93764 -31.30531 -30.32432 -29.18984 -25.86790 -24.94535 -23.40667 -23.28984 -22.09489 -19.34535 -18.94257 -18.71215 -17.68823 -17.35400 -16.67443 -16.29273 -16.04353 -15.47902 -15.19854 -14.99787 -14.83662 -14.69556 -14.54997 -14.28149 -14.00747 -13.82373 -13.43419 -13.28687 -13.15888 -13.04731 -12.87360 -12.54005 -12.44534 -12.25892 -12.06833 -11.98910 -11.84990 -11.78594 -11.73339 -11.66113 -11.45966 -11.34994 -10.74041 -9.95236 -9.16208 -8.24775 -6.31481 -0.10856 0.04383 0.81078 1.18119 1.45281 1.45800 1.56341 1.83380 1.95504 2.10649 2.33553 2.41132 3.06815 3.15507 3.53935 3.65810 3.83750 3.88939 4.13984 4.19045 4.25344 4.43108 4.45704 4.50318 4.55895 4.65054 4.69539 4.73075 4.87571 4.95150 5.11763 5.17401 5.29662 5.36342 5.38176 5.48110 5.60978 6.18699 6.25974 6.71825 6.79022 7.33123 8.91950 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003219 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.191914 B = 8695.587898 C =10263.261426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.102 4.102 4 C -0.055 4.055 5 C -0.075 4.075 6 Cl -0.052 7.052 7 C -0.004 4.004 8 Cl -0.048 7.048 9 C -0.193 4.193 10 C 0.146 3.854 11 O -0.311 6.311 12 C 0.063 3.937 13 C 0.028 3.972 14 H 0.128 0.872 15 C 0.249 3.751 16 N -0.501 5.501 17 C -0.001 4.001 18 C -0.532 4.532 19 H 0.031 0.969 20 C 0.005 3.995 21 N -0.954 5.954 22 Si 0.944 3.056 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.217 1.217 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 6.444 -25.960 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.103 4.103 4 C -0.073 4.073 5 C -0.103 4.103 6 Cl -0.023 7.023 7 C -0.032 4.032 8 Cl -0.019 7.019 9 C -0.212 4.212 10 C 0.099 3.901 11 O -0.224 6.224 12 C -0.012 4.012 13 C 0.007 3.993 14 H 0.146 0.854 15 C -0.068 4.068 16 N -0.178 5.178 17 C -0.040 4.040 18 C -0.570 4.570 19 H 0.049 0.951 20 C -0.192 4.192 21 N -0.594 5.594 22 Si 0.767 3.233 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.139 1.139 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.768 6.101 -25.966 27.289 hybrid contribution 0.336 0.859 1.048 1.396 sum 6.104 6.960 -24.917 26.582 Atomic orbital electron populations 1.21695 0.94929 1.02188 1.01310 1.20428 0.95839 0.90614 1.04214 1.19516 1.02897 0.98350 0.89578 1.20941 0.95931 0.91554 0.98877 1.20703 1.08069 0.94929 0.86614 1.98377 1.92194 1.80906 1.30841 1.20547 1.01681 0.87650 0.93275 1.98395 1.86806 1.17859 1.98858 1.21256 1.06259 0.94968 0.98743 1.18873 0.94156 0.90642 0.86417 1.86141 1.81494 1.41802 1.12965 1.23131 1.04433 0.93691 0.79986 1.19033 0.82147 1.02772 0.95389 0.85405 1.29436 0.95464 0.91618 0.90252 1.81010 1.14482 1.10666 1.11616 1.19586 0.99970 0.95284 0.89155 1.21317 1.44625 0.99842 0.91205 0.95097 1.26016 0.95104 1.02546 0.95567 1.70081 1.50798 1.39336 0.99172 0.85755 0.79361 0.78845 0.79320 1.20262 1.21792 1.13939 0.94938 0.91791 0.91556 0.88300 0.90852 0.81181 0.81984 0.89986 0.86321 0.90799 0.94879 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.89 71.98 0.71 -1.93 16 2 C -0.07 -1.22 5.79 29.85 0.17 -1.04 16 3 C -0.10 -1.86 5.15 -19.77 -0.10 -1.97 16 4 C -0.05 -0.85 9.46 22.27 0.21 -0.64 16 5 C -0.08 -1.36 6.32 22.35 0.14 -1.22 16 6 Cl -0.05 -0.88 27.95 -2.72 -0.08 -0.96 16 7 C 0.00 -0.07 6.32 22.33 0.14 0.07 16 8 Cl -0.05 -0.90 27.96 -2.72 -0.08 -0.98 16 9 C -0.19 -3.68 8.82 22.38 0.20 -3.48 16 10 C 0.15 3.02 6.66 22.50 0.15 3.17 16 11 O -0.31 -7.25 9.01 -92.76 -0.84 -8.09 16 12 C 0.06 1.38 4.09 71.98 0.29 1.67 16 13 C 0.03 0.86 2.45 -12.60 -0.03 0.83 16 14 H 0.13 3.75 8.14 -2.39 -0.02 3.73 16 15 C 0.25 9.56 13.71 89.45 1.23 10.78 16 16 N -0.50 -21.73 18.53 20.00 0.37 -21.36 16 17 C 0.00 -0.05 3.49 29.85 0.10 0.05 16 18 C -0.53 -27.36 9.15 25.60 0.23 -27.12 16 19 H 0.03 1.81 7.84 -2.91 -0.02 1.79 16 20 C 0.00 0.25 5.47 84.65 0.46 0.71 16 21 N -0.95 -57.67 13.96 21.45 0.30 -57.37 16 22 Si 0.94 39.50 27.47 68.60 1.88 41.38 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.22 -7.47 6.54 99.48 0.65 -6.82 16 26 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.10 1.12 8.05 -2.39 -0.02 1.10 16 30 H 0.07 1.38 7.69 -2.39 -0.02 1.36 16 31 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.16 2.61 6.30 -2.91 -0.02 2.59 16 33 H 0.08 1.65 7.65 -2.39 -0.02 1.63 16 34 H 0.12 1.87 7.67 -2.39 -0.02 1.85 16 35 H 0.07 2.33 7.20 -2.39 -0.02 2.31 16 36 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -67.03 351.30 6.52 -60.50 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.04 Total: 6.98 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.91 Total: -20.11 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: 0.67 Total: -78.73 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.84 Total: -8.09 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.88 Total: 41.38 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.15 Total: -1.94 kcal Total: -67.03 6.52 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432249592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.006 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds