Wall clock time and date at job start Tue Mar 31 2020 15:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39948 * 120.44941 * 99.22498 * 3 2 1 5 5 N 1.31293 * 120.74641 * 179.75602 * 4 3 2 6 6 C 1.32913 * 121.80524 * 0.53587 * 5 4 3 7 7 C 1.47868 * 119.59139 * 179.74792 * 6 5 4 8 8 O 1.21572 * 120.00668 * 139.64404 * 7 6 5 9 9 N 1.34782 * 119.99586 * 319.92162 * 7 6 5 10 10 C 1.36734 * 120.00086 * 188.55724 * 9 7 6 11 11 H 1.07999 * 120.00278 * 54.96782 * 10 9 7 12 12 C 1.39109 * 120.00155 * 234.97946 * 10 9 7 13 13 N 1.31289 * 119.99904 * 357.91122 * 12 10 9 14 14 Si 1.86799 * 120.00230 * 177.92047 * 12 10 9 15 15 H 1.48493 * 109.47258 * 64.99760 * 14 12 10 16 16 H 1.48500 * 109.47305 * 185.00026 * 14 12 10 17 17 H 1.48504 * 109.46740 * 304.99662 * 14 12 10 18 18 C 1.39695 * 119.99963 * 8.55326 * 9 7 6 19 19 C 1.38982 * 120.08385 * 261.87649 * 18 9 7 20 20 C 1.38075 * 119.92111 * 179.81431 * 19 18 9 21 21 C 1.38303 * 120.08148 * 0.44086 * 20 19 18 22 22 C 1.38311 * 120.16281 * 359.79167 * 21 20 19 23 23 C 1.38085 * 120.07728 * 0.02562 * 22 21 20 24 24 C 1.39634 * 120.82487 * 359.46208 * 6 5 4 25 25 Cl 1.73596 * 120.41722 * 180.27916 * 24 6 5 26 26 C 1.38468 * 119.16460 * 0.26441 * 24 6 5 27 27 H 1.08001 * 119.62849 * 0.02678 * 4 3 2 28 28 H 0.96995 * 120.00350 * 185.02848 * 13 12 10 29 29 H 1.08001 * 120.03775 * 0.02562 * 19 18 9 30 30 H 1.08003 * 119.95685 * 180.21038 * 20 19 18 31 31 H 1.08005 * 119.92380 * 179.76554 * 21 20 19 32 32 H 1.07998 * 119.96326 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.04008 * 179.97438 * 23 22 21 34 34 H 1.08003 * 120.82185 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2771 0.1944 -1.1909 5 7 4.5900 0.2008 -1.1968 6 6 5.2965 0.0151 -0.0864 7 6 6.7737 0.0264 -0.1503 8 8 7.4161 0.5710 0.7264 9 7 7.4080 -0.5625 -1.1836 10 6 8.7674 -0.7073 -1.1585 11 1 9.2419 -1.2081 -0.3276 12 6 9.5393 -0.2093 -2.2031 13 7 8.9597 0.3634 -3.2326 14 14 11.4006 -0.3554 -2.1412 15 1 11.7863 -1.7887 -2.1867 16 1 11.9918 0.3534 -3.3045 17 1 11.9032 0.2529 -0.8832 18 6 6.6764 -1.0249 -2.2802 19 6 6.3327 -2.3684 -2.3719 20 6 5.6063 -2.8211 -3.4553 21 6 5.2285 -1.9411 -4.4532 22 6 5.5728 -0.6043 -4.3678 23 6 6.2960 -0.1437 -3.2854 24 6 4.6611 -0.1845 1.1409 25 17 5.5943 -0.4187 2.5859 26 6 3.2774 -0.1929 1.1909 27 1 2.7383 0.3446 -2.1147 28 1 9.4911 0.6449 -3.9937 29 1 6.6306 -3.0569 -1.5949 30 1 5.3360 -3.8644 -3.5255 31 1 4.6636 -2.2987 -5.3014 32 1 5.2765 0.0800 -5.1490 33 1 6.5649 0.9003 -3.2195 34 1 2.7583 -0.3453 2.1257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439248923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:02 Heat of formation + Delta-G solvation = 64.343217 kcal Electronic energy + Delta-G solvation = -24802.739501 eV Core-core repulsion = 21113.197882 eV Total energy + Delta-G solvation = -3689.541619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94159 -40.46688 -39.02317 -37.84648 -37.59209 -36.36178 -34.16793 -33.59271 -32.50515 -31.41142 -30.18318 -27.82278 -25.93961 -24.89870 -23.42658 -23.03556 -21.74479 -20.39182 -19.38965 -18.86894 -18.09718 -17.30054 -16.95834 -16.36504 -16.23284 -15.95347 -15.77406 -15.59006 -15.01391 -14.77398 -14.53318 -14.37621 -14.26766 -14.13794 -13.94007 -13.68291 -13.43729 -13.20695 -13.07590 -12.93521 -12.75975 -12.24976 -12.18582 -11.98159 -11.72911 -11.15053 -10.99729 -10.93265 -10.53463 -10.13119 -9.45586 -9.39045 -9.15733 -8.17092 -6.28334 -0.93783 -0.14371 0.79444 0.84921 0.98985 1.39217 1.41366 1.49343 1.50306 1.55815 2.07906 2.22133 2.49325 2.63555 2.71318 3.05183 3.32570 3.33223 3.48979 3.59647 3.82093 4.05163 4.37810 4.43183 4.44358 4.60054 4.65435 4.92785 5.06699 5.08617 5.27366 5.43868 5.51944 5.82892 5.96369 6.13067 6.23324 6.33422 6.35752 6.52539 6.67935 7.10732 7.33354 7.93022 8.71148 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.005588 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.638732 B = 5009.762725 C = 6564.134832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.290 3.710 3 C -0.047 4.047 4 C 0.162 3.838 5 N -0.443 5.443 6 C 0.127 3.873 7 C 0.507 3.493 8 O -0.572 6.572 9 N -0.400 5.400 10 C -0.352 4.352 11 H 0.070 0.930 12 C 0.019 3.981 13 N -0.871 5.871 14 Si 0.980 3.020 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.277 1.277 18 C 0.156 3.844 19 C -0.147 4.147 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.025 4.025 24 C -0.065 4.065 25 Cl -0.030 7.030 26 C -0.005 4.005 27 H 0.207 0.793 28 H 0.272 0.728 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 -3.755 0.288 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.026 4.026 3 C -0.053 4.053 4 C -0.001 4.001 5 N -0.153 5.153 6 C -0.012 4.012 7 C 0.295 3.705 8 O -0.453 6.453 9 N -0.116 5.116 10 C -0.479 4.479 11 H 0.088 0.912 12 C -0.187 4.187 13 N -0.505 5.505 14 Si 0.803 3.197 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.202 1.202 18 C 0.066 3.934 19 C -0.167 4.167 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.045 4.045 24 C -0.095 4.095 25 Cl -0.001 7.001 26 C -0.033 4.033 27 H 0.223 0.777 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.797 -3.213 -0.077 13.195 hybrid contribution 1.586 0.012 1.054 1.904 sum -11.212 -3.201 0.977 11.700 Atomic orbital electron populations 1.81328 1.12261 1.09115 1.07597 1.24827 0.91348 0.93081 0.93383 1.16891 0.85540 1.07597 0.95251 1.23690 0.88404 0.89814 0.98205 1.68317 1.08631 1.11606 1.26716 1.21489 0.95006 0.95554 0.89114 1.18575 0.85835 0.80932 0.85165 1.90662 1.67084 1.46233 1.41316 1.40803 1.05789 1.50059 1.14956 1.19220 0.80615 1.39004 1.09087 0.91238 1.26328 1.04038 0.93004 0.95330 1.69888 1.37763 1.36682 1.06189 0.85219 0.77754 0.78932 0.77794 1.18831 1.19809 1.20201 1.17849 0.93151 0.92432 0.89957 1.21264 1.01031 0.94405 0.99984 1.21010 0.99623 1.00284 0.93944 1.21243 1.00878 0.92887 0.99068 1.21104 0.99701 0.96619 0.97776 1.20806 0.93063 0.98433 0.92182 1.21810 0.93317 1.05304 0.89102 1.98415 1.73084 1.94747 1.33898 1.21745 0.89776 0.91864 0.99941 0.77685 0.91771 0.88271 0.84404 0.83677 0.85030 0.89312 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.66 18.54 19.00 0.35 -9.31 16 2 C 0.29 5.41 15.36 88.33 1.36 6.77 16 3 C -0.05 -0.89 5.75 -21.20 -0.12 -1.01 16 4 C 0.16 3.59 10.91 85.19 0.93 4.52 16 5 N -0.44 -14.41 6.96 -183.86 -1.28 -15.69 16 6 C 0.13 4.77 6.20 41.87 0.26 5.03 16 7 C 0.51 24.77 7.01 86.79 0.61 25.38 16 8 O -0.57 -31.14 15.26 -3.94 -0.06 -31.20 16 9 N -0.40 -20.38 2.47 -461.94 -1.14 -21.52 16 10 C -0.35 -19.47 8.66 84.14 0.73 -18.74 16 11 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 12 C 0.02 1.01 5.40 84.98 0.46 1.47 16 13 N -0.87 -46.06 10.50 21.69 0.23 -45.84 16 14 Si 0.98 42.34 29.56 68.60 2.03 44.36 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.16 6.91 2.62 38.25 0.10 7.01 16 19 C -0.15 -5.76 9.97 22.41 0.22 -5.53 16 20 C -0.13 -4.02 10.04 22.25 0.22 -3.79 16 21 C -0.12 -3.48 10.04 22.30 0.22 -3.25 16 22 C -0.13 -4.36 10.04 22.25 0.22 -4.13 16 23 C -0.02 -1.04 6.36 22.41 0.14 -0.90 16 24 C -0.06 -1.96 6.34 22.66 0.14 -1.81 16 25 Cl -0.03 -0.98 26.82 -2.72 -0.07 -1.05 16 26 C -0.01 -0.10 9.70 22.74 0.22 0.12 16 27 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 30 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.09 4.26 7.54 -2.91 -0.02 4.23 16 34 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -67.96 327.87 6.94 -61.02 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.16 Total: 8.09 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.72 Total: 11.12 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -1.84 Total: -92.35 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.06 Total: -31.20 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -67.96 6.94 -61.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439248923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.364 kcal (2) G-P(sol) polarization free energy of solvation -67.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds