Wall clock time and date at job start Tue Mar 31 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33397 * 122.53965 * 2 1 4 4 S 1.75887 * 109.59256 * 179.77769 * 3 2 1 5 5 C 1.75887 * 90.96749 * 0.31833 * 4 3 2 6 6 S 1.76204 * 125.19694 * 179.97438 * 5 4 3 7 7 O 1.42104 * 106.39598 * 156.15164 * 6 5 4 8 8 O 1.42098 * 106.40117 * 23.23752 * 6 5 4 9 9 N 1.65594 * 107.22039 * 269.69187 * 6 5 4 10 10 C 1.39989 * 119.99656 * 65.00173 * 9 6 5 11 11 C 1.40432 * 125.97226 * 180.02562 * 10 9 6 12 12 C 1.35251 * 107.86019 * 179.70499 * 11 10 9 13 13 N 1.34962 * 107.86128 * 0.42675 * 12 11 10 14 14 C 1.46500 * 125.97410 * 179.83595 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71196 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31219 * 125.97824 * 359.97438 * 10 9 6 24 24 C 1.33383 * 109.59752 * 359.68442 * 5 4 3 25 25 H 1.09000 * 109.46923 * 269.97473 * 1 2 3 26 26 H 1.09003 * 109.46920 * 29.97168 * 1 2 3 27 27 H 1.08996 * 109.47328 * 149.97506 * 1 2 3 28 28 H 1.08002 * 125.20162 * 0.06986 * 3 2 1 29 29 H 0.96996 * 120.00453 * 245.00506 * 9 6 5 30 30 H 1.07997 * 126.07138 * 0.02562 * 11 10 9 31 31 H 1.07992 * 126.07316 * 180.25997 * 12 11 10 32 32 H 1.09004 * 109.47078 * 4.71958 * 14 13 12 33 33 H 1.08993 * 109.47364 * 244.71729 * 14 13 12 34 34 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 35 35 H 1.08000 * 122.54440 * 180.26829 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9387 0.7305 0.0064 5 6 3.5736 -0.9901 -0.0009 6 16 4.7714 -2.2824 -0.0005 7 8 4.1273 -3.4260 0.5442 8 8 5.9606 -1.7271 0.5441 9 7 5.1048 -2.6424 -1.5821 10 6 5.7190 -1.6887 -2.4024 11 6 6.0569 -1.8587 -3.7548 12 6 6.6239 -0.7099 -4.1884 13 7 6.6548 0.1535 -3.1515 14 6 7.1910 1.5165 -3.1822 15 6 6.1319 2.4836 -2.7194 16 1 5.1570 2.1192 -2.4308 17 6 6.4074 3.8334 -2.6645 18 7 7.5962 4.2765 -3.0108 19 14 5.0948 5.0320 -2.0901 20 1 5.6402 6.4130 -2.1157 21 1 3.9184 4.9475 -2.9926 22 1 4.6823 4.6882 -0.7057 23 7 6.0789 -0.4792 -2.0424 24 6 2.2516 -1.1669 -0.0006 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.8154 2.1241 0.0011 29 1 4.8746 -3.5139 -1.9401 30 1 5.8887 -2.7471 -4.3454 31 1 6.9896 -0.5183 -5.1862 32 1 7.4910 1.7660 -4.2000 33 1 8.0559 1.5817 -2.5222 34 1 8.2779 3.6541 -3.3088 35 1 1.7964 -2.1463 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451008076.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:49 Heat of formation + Delta-G solvation = 12.978878 kcal Electronic energy + Delta-G solvation = -23475.892037 eV Core-core repulsion = 19921.610751 eV Total energy + Delta-G solvation = -3554.281286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06683 -39.33216 -38.45277 -37.19892 -36.81698 -35.47931 -32.38763 -32.15581 -30.98021 -28.59396 -28.07963 -25.08916 -24.79550 -22.50593 -22.21596 -20.49109 -20.06804 -19.38691 -19.13725 -18.68030 -18.25646 -17.15077 -16.91693 -16.27257 -16.01418 -15.64546 -15.22727 -15.02667 -14.96502 -14.46957 -14.31802 -14.15149 -13.64456 -13.55360 -13.36859 -13.32960 -13.30049 -13.20618 -13.13721 -13.03655 -12.76356 -12.52490 -12.27840 -12.00886 -11.66491 -11.41365 -10.99851 -10.64120 -10.25798 -9.92708 -9.40001 -9.23987 -8.69757 -6.45263 -0.95679 -0.46769 0.46382 0.90642 1.12825 1.30221 1.47096 1.51069 1.54014 1.73312 1.87151 2.08317 2.47986 2.51099 3.08128 3.31764 3.59917 3.93041 4.00728 4.12087 4.26745 4.41703 4.55917 4.68114 4.72688 4.77235 4.85214 4.86436 4.94814 5.01916 5.27269 5.45979 5.54800 5.75632 5.90944 6.01947 6.37303 6.48344 6.88821 7.29172 8.67239 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.006355 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.309599 B = 4404.640620 C = 6109.641972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.135 4.135 3 C -0.194 4.194 4 S 0.210 5.790 5 C -0.808 4.808 6 S 2.736 3.264 7 O -0.956 6.956 8 O -0.971 6.971 9 N -0.997 5.997 10 C 0.271 3.729 11 C -0.287 4.287 12 C 0.065 3.935 13 N -0.339 5.339 14 C 0.257 3.743 15 C -0.608 4.608 16 H 0.062 0.938 17 C -0.018 4.018 18 N -0.931 5.931 19 Si 1.098 2.902 20 H -0.280 1.280 21 H -0.265 1.265 22 H -0.273 1.273 23 N -0.342 5.342 24 C 0.009 3.991 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.190 0.810 29 H 0.450 0.550 30 H 0.186 0.814 31 H 0.207 0.793 32 H 0.057 0.943 33 H 0.010 0.990 34 H 0.260 0.740 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 -12.370 0.311 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C -0.333 4.333 4 S 0.481 5.519 5 C -1.012 5.012 6 S 2.825 3.175 7 O -0.947 6.947 8 O -0.961 6.961 9 N -0.754 5.754 10 C 0.014 3.986 11 C -0.320 4.320 12 C -0.083 4.083 13 N -0.121 5.121 14 C 0.138 3.862 15 C -0.646 4.646 16 H 0.080 0.920 17 C -0.218 4.218 18 N -0.568 5.568 19 Si 0.920 3.080 20 H -0.205 1.205 21 H -0.190 1.190 22 H -0.198 1.198 23 N -0.173 5.173 24 C -0.028 4.028 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.207 0.793 29 H 0.291 0.709 30 H 0.203 0.797 31 H 0.224 0.776 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.786 -9.169 2.374 15.120 hybrid contribution -0.773 -2.578 -1.358 3.015 sum -12.558 -11.747 1.015 17.226 Atomic orbital electron populations 1.20621 0.86311 1.04257 1.03734 1.19496 0.99735 0.90780 1.04817 1.26596 0.96988 1.04529 1.05138 1.85763 1.04609 0.95099 1.66471 1.35420 1.16503 1.18058 1.31233 1.00515 0.72789 0.72406 0.71796 1.93579 1.77209 1.48195 1.75671 1.93603 1.46339 1.79953 1.76171 1.52333 1.71315 1.22207 1.29589 1.19056 0.98047 0.89304 0.92163 1.21334 1.15425 1.02155 0.93101 1.23194 1.00105 0.89585 0.95453 1.48551 1.44657 1.12821 1.06056 1.19439 0.94192 0.74663 0.97923 1.22350 1.00229 0.93497 1.48532 0.91973 1.26991 1.01275 0.99129 0.94371 1.70930 1.04400 1.38693 1.42758 0.83187 0.73311 0.74286 0.77252 1.20487 1.18970 1.19812 1.77409 1.21986 1.06378 1.11519 1.20251 0.89660 1.01698 0.91192 0.89664 0.90464 0.89656 0.79272 0.70904 0.79671 0.77649 0.92540 0.97259 0.92989 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.14 71.24 0.72 -0.65 16 2 C -0.14 -3.28 5.80 -20.92 -0.12 -3.40 16 3 C -0.19 -5.51 10.98 66.72 0.73 -4.77 16 4 S 0.21 7.96 22.43 -56.49 -1.27 6.70 16 5 C -0.81 -26.57 6.51 66.72 0.43 -26.13 16 6 S 2.74 90.86 5.64 -56.49 -0.32 90.54 16 7 O -0.96 -30.37 17.80 -128.00 -2.28 -32.65 16 8 O -0.97 -41.20 17.12 -128.00 -2.19 -43.39 16 9 N -1.00 -28.40 5.91 -54.61 -0.32 -28.72 16 10 C 0.27 9.61 7.72 133.39 1.03 10.64 16 11 C -0.29 -8.41 10.83 22.12 0.24 -8.17 16 12 C 0.07 2.13 11.44 83.52 0.96 3.08 16 13 N -0.34 -14.68 3.67 -351.84 -1.29 -15.98 16 14 C 0.26 12.61 5.57 85.64 0.48 13.08 16 15 C -0.61 -32.64 9.24 25.60 0.24 -32.40 16 16 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 17 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 18 N -0.93 -53.67 13.65 21.45 0.29 -53.38 16 19 Si 1.10 48.16 29.90 68.60 2.05 50.22 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 N -0.34 -15.10 10.68 -54.54 -0.58 -15.68 16 24 C 0.01 0.25 9.64 21.21 0.20 0.45 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.08 1.02 8.13 -2.39 -0.02 1.01 16 28 H 0.19 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.45 8.53 8.95 -96.75 -0.87 7.66 16 30 H 0.19 3.67 8.06 -2.91 -0.02 3.64 16 31 H 0.21 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.06 2.62 7.94 -2.39 -0.02 2.60 16 33 H 0.01 0.51 8.00 -2.39 -0.02 0.49 16 34 H 0.26 14.86 7.22 -92.71 -0.67 14.19 16 35 H 0.18 3.45 8.05 -2.91 -0.02 3.43 16 Total: -1.00 -75.40 337.98 -0.16 -75.56 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.37 Total: 15.58 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 5.37 Total: -48.80 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -1.90 Total: -113.76 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -4.47 Total: -76.04 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.05 Total: 50.22 kcal Atomic # 16 Polarization: 98.83 SS G_CDS: -1.59 Total: 97.24 kcal Total: -75.40 -0.16 -75.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451008076.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.539 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds