Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 220.24296 * 3 2 1 5 5 C 1.52998 * 109.47352 * 345.83962 * 4 3 2 6 6 N 1.46503 * 109.46924 * 180.02562 * 5 4 3 7 7 S 1.65601 * 119.99744 * 164.99729 * 6 5 4 8 8 O 1.42104 * 106.40284 * 311.45833 * 7 6 5 9 9 O 1.42092 * 106.40229 * 178.54056 * 7 6 5 10 10 C 1.76201 * 107.21800 * 65.00068 * 7 6 5 11 11 C 1.38629 * 119.75664 * 115.25353 * 10 7 6 12 12 C 1.37601 * 120.26043 * 180.29453 * 11 10 7 13 13 C 1.40740 * 119.77192 * 359.72858 * 12 11 10 14 14 C 1.41402 * 120.23671 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99902 * 24.38233 * 14 13 12 16 16 C 1.39942 * 120.00052 * 204.37458 * 14 13 12 17 17 N 1.30829 * 119.99902 * 17.86558 * 16 14 13 18 18 Si 1.86796 * 120.00336 * 197.86037 * 16 14 13 19 19 H 1.48507 * 109.47003 * 60.00211 * 18 16 14 20 20 H 1.48498 * 109.47335 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47450 * 300.00363 * 18 16 14 22 22 C 1.40671 * 119.52576 * 359.97438 * 13 12 11 23 23 C 1.37757 * 119.73319 * 0.02562 * 22 13 12 24 24 Cl 1.73593 * 119.89142 * 179.97438 * 23 22 13 25 25 H 1.09000 * 109.47477 * 333.91466 * 1 2 3 26 26 H 1.08997 * 109.47581 * 93.92094 * 1 2 3 27 27 H 1.09004 * 109.47028 * 213.92089 * 1 2 3 28 28 H 1.09001 * 109.46842 * 225.83492 * 4 3 2 29 29 H 1.09000 * 109.46803 * 105.84098 * 4 3 2 30 30 H 1.08997 * 109.47221 * 59.99572 * 5 4 3 31 31 H 1.09004 * 109.46809 * 299.99932 * 5 4 3 32 32 H 0.96990 * 119.99906 * 345.00067 * 6 5 4 33 33 H 1.07995 * 119.87162 * 0.02562 * 11 10 7 34 34 H 1.08002 * 120.11530 * 179.70100 * 12 11 10 35 35 H 0.97000 * 119.99707 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.13404 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 6 4.6290 -1.3965 0.3535 6 7 6.0941 -1.3951 0.3544 7 16 6.9227 -2.6468 1.0537 8 8 6.3410 -2.8472 2.3346 9 8 8.3033 -2.3709 0.8617 10 6 6.5695 -4.0953 0.1146 11 6 7.5871 -4.7289 -0.5817 12 6 7.3217 -5.8573 -1.3232 13 6 6.0125 -6.3716 -1.3689 14 6 5.7288 -7.5308 -2.1273 15 1 6.5139 -8.2403 -2.3432 16 6 4.4308 -7.7588 -2.5980 17 7 3.5720 -6.7734 -2.6516 18 14 3.9245 -9.4701 -3.1498 19 1 4.0664 -10.4182 -2.0157 20 1 2.5101 -9.4462 -3.6016 21 1 4.7945 -9.9062 -4.2714 22 6 4.9882 -5.7248 -0.6537 23 6 5.2763 -4.5965 0.0823 24 17 4.0154 -3.7947 0.9658 25 1 -0.3634 0.9230 0.4519 26 1 -0.3634 -0.0703 -1.0252 27 1 -0.3633 -0.8528 0.5735 28 1 4.4805 0.7180 0.7377 29 1 4.4813 0.2825 -0.9881 30 1 4.2665 -2.1128 -0.3838 31 1 4.2656 -1.6773 1.3420 32 1 6.5786 -0.6611 -0.0544 33 1 8.5912 -4.3330 -0.5456 34 1 8.1153 -6.3463 -1.8687 35 1 2.6721 -6.9315 -2.9775 36 1 3.9801 -6.1113 -0.6815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451383949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = -21.367216 kcal Electronic energy + Delta-G solvation = -22916.509419 eV Core-core repulsion = 19326.402317 eV Total energy + Delta-G solvation = -3590.107102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -37.91027 -36.76189 -36.16821 -35.65117 -35.11360 -34.13517 -33.86248 -30.64398 -30.34805 -29.48413 -27.06010 -26.05282 -23.13350 -21.79611 -21.34672 -19.04682 -17.88257 -17.40599 -16.71734 -16.29578 -15.70492 -15.67611 -15.02745 -14.58372 -14.54946 -13.87581 -13.67368 -13.62888 -13.43446 -13.32305 -12.98570 -12.77042 -12.55122 -12.24199 -12.01196 -11.59767 -11.47641 -11.41356 -11.34259 -11.29093 -11.10697 -10.62915 -10.46859 -10.20178 -10.07677 -9.82879 -9.66068 -9.62857 -9.34009 -8.95637 -8.13257 -7.72811 -7.28915 -4.97144 1.20927 2.02620 2.62983 2.74572 2.78357 2.80375 2.83342 2.87346 2.92218 3.56400 3.67414 4.06347 4.33523 4.44876 5.06209 5.15771 5.16997 5.27758 5.46780 5.51090 5.54831 5.61309 5.89219 5.92284 5.94720 6.09948 6.30498 6.37689 6.52502 6.64545 6.78188 6.97381 7.14894 7.28130 7.35737 7.55242 7.71474 7.73698 8.05084 8.31387 8.38384 9.61289 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.004929 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.796373 B = 5679.162138 C = 7653.427549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.194 4.194 3 C -0.179 4.179 4 C -0.015 4.015 5 C 0.117 3.883 6 N -1.123 6.123 7 S 2.700 3.300 8 O -0.969 6.969 9 O -0.986 6.986 10 C -0.792 4.792 11 C 0.012 3.988 12 C -0.237 4.237 13 C 0.142 3.858 14 C -0.423 4.423 15 H 0.093 0.907 16 C 0.070 3.930 17 N -0.758 5.758 18 Si 0.921 3.079 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.260 1.260 22 C -0.167 4.167 23 C 0.068 3.932 24 Cl -0.097 7.097 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.293 0.707 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 7.551 0.441 8.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.194 4.194 3 C -0.180 4.180 4 C -0.053 4.053 5 C -0.009 4.009 6 N -0.880 5.880 7 S 2.796 3.204 8 O -0.959 6.959 9 O -0.976 6.976 10 C -0.887 4.887 11 C -0.009 4.009 12 C -0.258 4.258 13 C 0.137 3.863 14 C -0.450 4.450 15 H 0.111 0.889 16 C -0.154 4.154 17 N -0.379 5.379 18 Si 0.743 3.257 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.184 1.184 22 C -0.188 4.188 23 C 0.040 3.960 24 Cl -0.068 7.068 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.244 0.756 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.085 7.634 1.287 8.753 hybrid contribution -0.610 -0.695 -1.101 1.438 sum -4.695 6.939 0.186 8.380 Atomic orbital electron populations 1.18830 0.84783 1.02826 1.02975 1.22348 0.93888 1.01167 1.01983 1.22037 0.93312 1.01502 1.01112 1.18910 0.84852 0.98330 1.03254 1.22053 0.79132 0.96337 1.03388 1.55604 1.14946 1.39396 1.78055 1.01144 0.72068 0.73173 0.74039 1.93540 1.78587 1.85782 1.37980 1.93482 1.31898 1.85181 1.87068 1.29070 0.99674 1.26722 1.33185 1.20182 0.95764 0.93753 0.91159 1.21113 0.97407 1.00015 1.07216 1.17716 0.90742 0.90295 0.87514 1.19968 0.95127 1.04513 1.25361 0.88880 1.26203 0.95932 0.99579 0.93649 1.69786 1.06264 1.32790 1.29097 0.86127 0.78494 0.80836 0.80209 1.18157 1.19734 1.18381 1.21284 1.01248 0.96506 0.99763 1.20101 0.86315 0.95080 0.94491 1.98320 1.55082 1.77628 1.75785 0.90489 0.90295 0.90147 0.89223 0.89113 0.89989 0.89662 0.75627 0.86419 0.87497 0.89526 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.36 10.32 34.37 0.35 0.00 16 2 C -0.19 -2.61 14.13 -37.12 -0.52 -3.14 16 3 C -0.18 -2.55 13.34 -37.12 -0.50 -3.05 16 4 C -0.02 -0.19 5.84 -29.52 -0.17 -0.37 16 5 C 0.12 1.83 4.05 -4.04 -0.02 1.82 16 6 N -1.12 -17.49 6.00 -10.61 -0.06 -17.56 16 7 S 2.70 52.85 5.44 -107.50 -0.58 52.26 16 8 O -0.97 -21.05 15.94 -57.17 -0.91 -21.96 16 9 O -0.99 -20.48 16.94 -57.17 -0.97 -21.45 16 10 C -0.79 -17.40 5.91 -39.25 -0.23 -17.64 16 11 C 0.01 0.25 9.52 -39.67 -0.38 -0.12 16 12 C -0.24 -5.37 9.79 -38.87 -0.38 -5.75 16 13 C 0.14 3.44 5.57 -106.83 -0.60 2.84 16 14 C -0.42 -9.85 9.05 -37.74 -0.34 -10.19 16 15 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 16 C 0.07 1.53 5.14 -17.34 -0.09 1.44 16 17 N -0.76 -17.22 10.96 55.55 0.61 -16.61 16 18 Si 0.92 16.23 29.59 -169.99 -5.03 11.20 16 19 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 20 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 21 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 22 C -0.17 -4.06 8.47 -38.84 -0.33 -4.39 16 23 C 0.07 1.56 6.08 -39.57 -0.24 1.32 16 24 Cl -0.10 -1.96 20.53 -51.86 -1.06 -3.03 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.41 6.14 -51.93 -0.32 1.09 16 31 H 0.09 1.44 5.86 -51.93 -0.30 1.13 16 32 H 0.41 5.06 8.65 -34.47 -0.30 4.76 16 33 H 0.12 2.33 7.31 -52.49 -0.38 1.95 16 34 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 35 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 36 H 0.13 3.29 6.16 -52.48 -0.32 2.97 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -29.09 333.04 -10.15 -39.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -3.71 Total: 10.11 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: -3.44 Total: -37.22 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.54 Total: -34.17 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.88 Total: -43.41 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.20 kcal Atomic # 16 Polarization: 52.85 SS G_CDS: -0.58 Total: 52.26 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -1.06 Total: -3.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.09 -10.15 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451383949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.869 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds