Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 220.24296 * 3 2 1 5 5 C 1.52998 * 109.47352 * 345.83962 * 4 3 2 6 6 N 1.46503 * 109.46924 * 180.02562 * 5 4 3 7 7 S 1.65601 * 119.99744 * 164.99729 * 6 5 4 8 8 O 1.42104 * 106.40284 * 311.45833 * 7 6 5 9 9 O 1.42092 * 106.40229 * 178.54056 * 7 6 5 10 10 C 1.76201 * 107.21800 * 65.00068 * 7 6 5 11 11 C 1.38629 * 119.75664 * 115.25353 * 10 7 6 12 12 C 1.37601 * 120.26043 * 180.29453 * 11 10 7 13 13 C 1.40740 * 119.77192 * 359.72858 * 12 11 10 14 14 C 1.41402 * 120.23671 * 180.02562 * 13 12 11 15 15 H 1.07995 * 119.99902 * 24.38233 * 14 13 12 16 16 C 1.39942 * 120.00052 * 204.37458 * 14 13 12 17 17 N 1.30829 * 119.99902 * 17.86558 * 16 14 13 18 18 Si 1.86796 * 120.00336 * 197.86037 * 16 14 13 19 19 H 1.48507 * 109.47003 * 60.00211 * 18 16 14 20 20 H 1.48498 * 109.47335 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47450 * 300.00363 * 18 16 14 22 22 C 1.40671 * 119.52576 * 359.97438 * 13 12 11 23 23 C 1.37757 * 119.73319 * 0.02562 * 22 13 12 24 24 Cl 1.73593 * 119.89142 * 179.97438 * 23 22 13 25 25 H 1.09000 * 109.47477 * 333.91466 * 1 2 3 26 26 H 1.08997 * 109.47581 * 93.92094 * 1 2 3 27 27 H 1.09004 * 109.47028 * 213.92089 * 1 2 3 28 28 H 1.09001 * 109.46842 * 225.83492 * 4 3 2 29 29 H 1.09000 * 109.46803 * 105.84098 * 4 3 2 30 30 H 1.08997 * 109.47221 * 59.99572 * 5 4 3 31 31 H 1.09004 * 109.46809 * 299.99932 * 5 4 3 32 32 H 0.96990 * 119.99906 * 345.00067 * 6 5 4 33 33 H 1.07995 * 119.87162 * 0.02562 * 11 10 7 34 34 H 1.08002 * 120.11530 * 179.70100 * 12 11 10 35 35 H 0.97000 * 119.99707 * 180.02562 * 17 16 14 36 36 H 1.08004 * 120.13404 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 6 4.6290 -1.3965 0.3535 6 7 6.0941 -1.3951 0.3544 7 16 6.9227 -2.6468 1.0537 8 8 6.3410 -2.8472 2.3346 9 8 8.3033 -2.3709 0.8617 10 6 6.5695 -4.0953 0.1146 11 6 7.5871 -4.7289 -0.5817 12 6 7.3217 -5.8573 -1.3232 13 6 6.0125 -6.3716 -1.3689 14 6 5.7288 -7.5308 -2.1273 15 1 6.5139 -8.2403 -2.3432 16 6 4.4308 -7.7588 -2.5980 17 7 3.5720 -6.7734 -2.6516 18 14 3.9245 -9.4701 -3.1498 19 1 4.0664 -10.4182 -2.0157 20 1 2.5101 -9.4462 -3.6016 21 1 4.7945 -9.9062 -4.2714 22 6 4.9882 -5.7248 -0.6537 23 6 5.2763 -4.5965 0.0823 24 17 4.0154 -3.7947 0.9658 25 1 -0.3634 0.9230 0.4519 26 1 -0.3634 -0.0703 -1.0252 27 1 -0.3633 -0.8528 0.5735 28 1 4.4805 0.7180 0.7377 29 1 4.4813 0.2825 -0.9881 30 1 4.2665 -2.1128 -0.3838 31 1 4.2656 -1.6773 1.3420 32 1 6.5786 -0.6611 -0.0544 33 1 8.5912 -4.3330 -0.5456 34 1 8.1153 -6.3463 -1.8687 35 1 2.6721 -6.9315 -2.9775 36 1 3.9801 -6.1113 -0.6815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451383949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = -38.987592 kcal Electronic energy + Delta-G solvation = -22917.273496 eV Core-core repulsion = 19326.402317 eV Total energy + Delta-G solvation = -3590.871178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.63855 -38.32445 -37.61782 -37.18582 -36.77890 -35.82676 -34.92128 -32.08992 -31.66783 -31.22888 -28.04141 -27.78193 -24.33888 -23.50702 -23.09017 -20.55968 -19.60546 -18.92625 -18.32154 -17.52250 -17.29984 -16.97637 -16.28097 -16.15913 -16.10938 -15.40360 -15.05903 -14.79257 -14.53807 -14.40341 -14.38081 -14.20430 -14.10107 -13.74544 -13.30134 -13.13540 -13.04500 -12.98567 -12.95090 -12.87409 -12.66241 -12.20464 -12.04185 -11.83907 -11.69504 -11.27621 -11.20617 -10.66850 -10.60164 -10.34134 -9.89102 -9.47549 -8.94387 -6.73880 -0.36336 0.30020 0.84688 1.18498 1.35841 1.43610 1.50596 1.69082 1.77212 2.09005 2.19475 2.42737 2.85093 3.36061 3.38101 3.63207 3.97115 4.15347 4.21917 4.46284 4.58177 4.67270 4.78457 4.80660 4.81890 4.85123 4.91619 4.98185 5.05431 5.07971 5.11452 5.22850 5.39191 5.52847 5.78950 5.99384 6.18835 6.30220 6.56577 6.62666 6.70905 7.99362 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.004929 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.796373 B = 5679.162138 C = 7653.427549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.200 4.200 3 C -0.216 4.216 4 C -0.009 4.009 5 C 0.116 3.884 6 N -1.105 6.105 7 S 2.724 3.276 8 O -0.990 6.990 9 O -0.995 6.995 10 C -0.807 4.807 11 C 0.006 3.994 12 C -0.251 4.251 13 C 0.114 3.886 14 C -0.448 4.448 15 H 0.101 0.899 16 C 0.035 3.965 17 N -0.787 5.787 18 Si 0.992 3.008 19 H -0.258 1.258 20 H -0.264 1.264 21 H -0.252 1.252 22 C -0.192 4.192 23 C 0.061 3.939 24 Cl -0.080 7.080 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.429 0.571 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.302 0.698 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 8.116 -0.007 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.200 4.200 3 C -0.217 4.217 4 C -0.047 4.047 5 C -0.010 4.010 6 N -0.867 5.867 7 S 2.818 3.182 8 O -0.980 6.980 9 O -0.985 6.985 10 C -0.899 4.899 11 C -0.014 4.014 12 C -0.271 4.271 13 C 0.110 3.890 14 C -0.474 4.474 15 H 0.119 0.881 16 C -0.186 4.186 17 N -0.409 5.409 18 Si 0.811 3.189 19 H -0.182 1.182 20 H -0.188 1.188 21 H -0.176 1.176 22 C -0.212 4.212 23 C 0.033 3.967 24 Cl -0.051 7.051 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.266 0.734 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.554 8.204 0.825 9.419 hybrid contribution -0.512 -0.752 -0.927 1.299 sum -5.066 7.452 -0.102 9.011 Atomic orbital electron populations 1.19089 0.82430 1.04223 1.04205 1.23364 0.95302 1.00087 1.01290 1.22540 0.94257 1.02768 1.02166 1.18900 0.84254 0.96506 1.05014 1.21953 0.78641 0.98264 1.02147 1.55169 1.15037 1.38698 1.77806 1.00407 0.71688 0.72822 0.73327 1.93512 1.78991 1.86202 1.39257 1.93462 1.32719 1.85210 1.87121 1.29519 0.99320 1.28160 1.32936 1.20471 0.96692 0.93485 0.90737 1.21359 0.97403 1.00500 1.07818 1.18077 0.91527 0.91140 0.88242 1.20305 0.96485 1.04737 1.25895 0.88054 1.27057 0.95286 1.03183 0.93119 1.69822 1.06888 1.34782 1.29382 0.85074 0.78460 0.75650 0.79741 1.18178 1.18841 1.17556 1.21273 1.00941 0.97728 1.01304 1.20265 0.87315 0.94820 0.94266 1.98320 1.54472 1.77013 1.75268 0.88298 0.88954 0.89490 0.87102 0.87159 0.91742 0.90982 0.73438 0.84479 0.85933 0.88678 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.74 10.32 70.18 0.72 -0.01 16 2 C -0.20 -5.17 14.13 31.12 0.44 -4.73 16 3 C -0.22 -5.94 13.34 31.13 0.42 -5.53 16 4 C -0.01 -0.21 5.84 28.79 0.17 -0.04 16 5 C 0.12 3.54 4.05 86.38 0.35 3.89 16 6 N -1.11 -32.87 6.00 -187.49 -1.12 -34.00 16 7 S 2.72 104.28 5.44 -56.49 -0.31 103.98 16 8 O -0.99 -42.41 15.94 -128.00 -2.04 -44.45 16 9 O -0.99 -39.90 16.94 -128.00 -2.17 -42.07 16 10 C -0.81 -35.51 5.91 22.48 0.13 -35.37 16 11 C 0.01 0.26 9.52 22.21 0.21 0.47 16 12 C -0.25 -11.46 9.79 22.73 0.22 -11.24 16 13 C 0.11 5.68 5.57 -21.29 -0.12 5.56 16 14 C -0.45 -21.16 9.05 23.46 0.21 -20.95 16 15 H 0.10 4.43 7.91 -2.91 -0.02 4.41 16 16 C 0.03 1.51 5.14 85.26 0.44 1.95 16 17 N -0.79 -36.24 10.96 21.83 0.24 -36.00 16 18 Si 0.99 32.70 29.59 68.60 2.03 34.73 16 19 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 20 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 21 H -0.25 -7.94 7.11 99.48 0.71 -7.23 16 22 C -0.19 -9.58 8.47 22.75 0.19 -9.38 16 23 C 0.06 2.85 6.08 22.28 0.14 2.99 16 24 Cl -0.08 -3.26 20.53 -2.72 -0.06 -3.31 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.21 6.14 -2.39 -0.01 2.19 16 31 H 0.07 2.39 5.86 -2.38 -0.01 2.38 16 32 H 0.43 9.61 8.65 -96.75 -0.84 8.77 16 33 H 0.14 5.31 7.31 -2.91 -0.02 5.29 16 34 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.30 12.39 8.30 -92.71 -0.77 11.62 16 36 H 0.12 6.23 6.16 -2.91 -0.02 6.21 16 Total: -1.00 -62.54 333.04 0.40 -62.14 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.30 Total: 31.39 kcal Atomic # 6 Polarization: -75.92 SS G_CDS: 3.53 Total: -72.40 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -0.89 Total: -70.00 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -4.21 Total: -86.53 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Atomic # 16 Polarization: 104.28 SS G_CDS: -0.31 Total: 103.98 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.06 Total: -3.31 kcal Total: -62.54 0.40 -62.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451383949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.154 kcal (2) G-P(sol) polarization free energy of solvation -62.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds