Wall clock time and date at job start Tue Mar 31 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47358 * 91.52804 * 4 3 2 6 6 C 1.46497 * 119.99765 * 275.27204 * 5 4 3 7 7 S 1.65601 * 120.00260 * 95.26670 * 5 4 3 8 8 O 1.42099 * 106.40141 * 329.52421 * 7 5 4 9 9 O 1.42097 * 106.40283 * 196.60273 * 7 5 4 10 10 C 1.76202 * 107.21588 * 83.06243 * 7 5 4 11 11 C 1.38640 * 119.75482 * 246.38760 * 10 7 5 12 12 C 1.37600 * 120.25666 * 180.29590 * 11 10 7 13 13 C 1.40739 * 119.77355 * 359.72730 * 12 11 10 14 14 C 1.41404 * 120.23603 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99993 * 30.89880 * 14 13 12 16 16 C 1.39944 * 119.99739 * 210.89976 * 14 13 12 17 17 N 1.30822 * 120.00391 * 14.54597 * 16 14 13 18 18 Si 1.86803 * 119.99835 * 194.55076 * 16 14 13 19 19 H 1.48497 * 109.47440 * 59.99411 * 18 16 14 20 20 H 1.48498 * 109.46989 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46897 * 299.99829 * 18 16 14 22 22 C 1.40674 * 119.52747 * 359.97438 * 13 12 11 23 23 C 1.37752 * 119.73092 * 359.97438 * 22 13 12 24 24 Cl 1.73593 * 119.89203 * 179.97438 * 23 22 13 25 25 H 1.08997 * 109.47255 * 268.46920 * 1 2 3 26 26 H 1.08991 * 109.47383 * 28.47714 * 1 2 3 27 27 H 1.09008 * 109.46787 * 148.47113 * 1 2 3 28 28 H 1.09000 * 109.47247 * 331.52299 * 4 3 2 29 29 H 1.08999 * 109.46733 * 211.52634 * 4 3 2 30 30 H 1.08997 * 109.47131 * 269.99479 * 6 5 4 31 31 H 1.08997 * 109.47444 * 30.00043 * 6 5 4 32 32 H 1.09007 * 109.47141 * 149.99659 * 6 5 4 33 33 H 1.07995 * 119.87444 * 0.02562 * 11 10 7 34 34 H 1.08004 * 120.11082 * 179.70128 * 12 11 10 35 35 H 0.96999 * 120.00223 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.13488 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6063 0.0391 -1.3807 6 6 4.7417 -1.2042 -2.1435 7 16 5.0052 1.4867 -2.0792 8 8 4.1639 2.4648 -1.4837 9 8 5.0573 1.2553 -3.4802 10 6 6.6495 1.8725 -1.5771 11 6 6.8795 2.9653 -0.7555 12 6 8.1601 3.2796 -0.3621 13 6 9.2384 2.4838 -0.7919 14 6 10.5583 2.7975 -0.3931 15 1 10.7362 3.2677 0.5627 16 6 11.6339 2.4987 -1.2369 17 7 11.4173 2.1991 -2.4918 18 14 13.3791 2.5275 -0.5715 19 1 13.5045 1.5421 0.5323 20 1 14.3290 2.1781 -1.6581 21 1 13.6913 3.8861 -0.0597 22 6 8.9937 1.3734 -1.6202 23 6 7.7036 1.0764 -2.0012 24 17 7.3970 -0.2924 -3.0238 25 1 -0.3633 -0.0275 1.0273 26 1 -0.3633 0.9032 -0.4899 27 1 -0.3633 -0.8760 -0.5374 28 1 4.4821 -0.9012 0.4900 29 1 4.4805 0.8782 0.5374 30 1 5.7402 -1.6152 -1.9943 31 1 3.9978 -1.9235 -1.8010 32 1 4.5879 -0.9991 -3.2030 33 1 6.0510 3.5749 -0.4266 34 1 8.3371 4.1343 0.2740 35 1 12.1628 1.9916 -3.0766 36 1 9.8138 0.7559 -1.9555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451589568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:17 Heat of formation + Delta-G solvation = -16.055251 kcal Electronic energy + Delta-G solvation = -23101.437140 eV Core-core repulsion = 19511.560382 eV Total energy + Delta-G solvation = -3589.876758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -37.89276 -36.64205 -36.51988 -35.64898 -35.12504 -34.07032 -33.61558 -30.34493 -29.61949 -29.51877 -26.80014 -26.01200 -24.30656 -21.77687 -21.35335 -18.61644 -17.83766 -17.46357 -16.91007 -16.45041 -15.73582 -15.61994 -14.57954 -14.47798 -14.17779 -13.88924 -13.69707 -13.53799 -13.39573 -13.09101 -12.98905 -12.74193 -12.60057 -12.26491 -12.17257 -11.70824 -11.51284 -11.34819 -11.29353 -11.21916 -11.14282 -10.56448 -10.51054 -10.40205 -10.11445 -9.89129 -9.66857 -9.60767 -9.51814 -8.90573 -8.07920 -7.74954 -7.23195 -4.95606 1.08660 2.00947 2.59925 2.69325 2.83023 2.83246 2.85437 2.88020 2.95878 3.59477 3.67529 4.11944 4.28867 4.49439 5.00863 5.02935 5.17568 5.43046 5.46988 5.57662 5.59343 5.61574 5.80483 5.89933 5.91694 6.06261 6.18159 6.34496 6.54014 6.61853 6.76537 6.85468 6.96771 7.13928 7.29163 7.53841 7.74483 7.74915 8.06345 8.33244 8.37763 9.69619 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.003725 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.464336 B = 7515.831998 C = 7953.770773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.186 4.186 3 C -0.192 4.192 4 C 0.242 3.758 5 N -0.999 5.999 6 C 0.086 3.914 7 S 2.693 3.307 8 O -0.978 6.978 9 O -0.963 6.963 10 C -0.789 4.789 11 C 0.007 3.993 12 C -0.232 4.232 13 C 0.147 3.853 14 C -0.432 4.432 15 H 0.093 0.907 16 C 0.070 3.930 17 N -0.764 5.764 18 Si 0.921 3.079 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.260 1.260 22 C -0.162 4.162 23 C 0.075 3.925 24 Cl -0.099 7.099 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.293 0.707 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -6.108 4.202 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.188 4.188 3 C -0.194 4.194 4 C 0.117 3.883 5 N -0.834 5.834 6 C -0.060 4.060 7 S 2.790 3.210 8 O -0.968 6.968 9 O -0.954 6.954 10 C -0.883 4.883 11 C -0.013 4.013 12 C -0.252 4.252 13 C 0.143 3.857 14 C -0.459 4.459 15 H 0.111 0.889 16 C -0.153 4.153 17 N -0.386 5.386 18 Si 0.744 3.256 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.185 1.185 22 C -0.183 4.183 23 C 0.047 3.953 24 Cl -0.070 7.070 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.728 -5.842 3.292 11.006 hybrid contribution 1.497 -0.214 0.380 1.559 sum -7.231 -6.056 3.672 10.121 Atomic orbital electron populations 1.18839 0.84871 1.02952 1.02788 1.22397 0.93879 1.02577 0.99903 1.22988 0.94185 1.00442 1.01795 1.17957 0.82971 1.04333 0.83083 1.57607 1.79758 1.23786 1.22199 1.21704 1.01886 0.85745 0.96617 1.01488 0.74366 0.71693 0.73426 1.93486 1.66455 1.58154 1.78730 1.93529 1.87896 1.84709 1.29237 1.29161 1.19005 1.12990 1.27172 1.20227 0.97151 0.92253 0.91659 1.21155 0.92569 1.02265 1.09223 1.17725 0.92992 0.87882 0.87083 1.19898 0.90276 1.32213 1.03518 0.88937 1.26154 1.02837 0.92099 0.94213 1.69775 1.35818 1.28524 1.04478 0.86133 0.79360 0.80360 0.79788 1.18287 1.19806 1.18466 1.21191 0.93139 0.99584 1.04377 1.20041 0.94740 0.87685 0.92873 1.98310 1.95658 1.44862 1.68155 0.90298 0.90201 0.90455 0.88199 0.87840 0.91978 0.91701 0.90108 0.86410 0.87381 0.89565 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.36 10.32 34.37 0.35 -0.01 16 2 C -0.19 -2.60 14.13 -37.12 -0.52 -3.13 16 3 C -0.19 -2.91 13.67 -37.12 -0.51 -3.42 16 4 C 0.24 3.46 5.80 -6.83 -0.04 3.42 16 5 N -1.00 -16.50 3.13 -124.91 -0.39 -16.89 16 6 C 0.09 1.24 9.01 59.85 0.54 1.77 16 7 S 2.69 54.80 5.04 -107.50 -0.54 54.26 16 8 O -0.98 -21.22 16.17 -57.17 -0.92 -22.14 16 9 O -0.96 -21.52 14.88 -57.17 -0.85 -22.37 16 10 C -0.79 -17.34 5.94 -39.25 -0.23 -17.57 16 11 C 0.01 0.16 9.52 -39.67 -0.38 -0.22 16 12 C -0.23 -5.20 9.79 -38.87 -0.38 -5.58 16 13 C 0.15 3.56 5.50 -106.83 -0.59 2.97 16 14 C -0.43 -10.06 9.04 -37.74 -0.34 -10.40 16 15 H 0.09 2.00 7.89 -52.49 -0.41 1.59 16 16 C 0.07 1.55 5.16 -17.34 -0.09 1.46 16 17 N -0.76 -17.87 11.21 55.55 0.62 -17.24 16 18 Si 0.92 16.41 29.58 -169.99 -5.03 11.38 16 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 22 C -0.16 -3.91 8.43 -38.84 -0.33 -4.23 16 23 C 0.07 1.70 6.29 -39.58 -0.25 1.45 16 24 Cl -0.10 -1.97 22.99 -51.86 -1.19 -3.16 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.10 1.12 8.11 -51.93 -0.42 0.70 16 29 H 0.10 1.45 7.79 -51.93 -0.40 1.05 16 30 H 0.06 0.87 6.21 -51.93 -0.32 0.55 16 31 H 0.06 0.76 8.07 -51.93 -0.42 0.35 16 32 H 0.08 1.23 7.00 -51.92 -0.36 0.87 16 33 H 0.12 2.32 7.31 -52.49 -0.38 1.94 16 34 H 0.11 2.20 8.06 -52.48 -0.42 1.77 16 35 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 36 H 0.13 3.15 6.54 -52.49 -0.34 2.80 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -29.37 336.62 -9.89 -39.27 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.90 Total: 5.32 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -2.76 Total: -33.48 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.23 Total: -34.14 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.78 Total: -44.52 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.54 Total: 54.26 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.19 Total: -3.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.37 -9.89 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451589568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.212 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds