Wall clock time and date at job start Tue Mar 31 2020 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17397 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47358 * 91.52804 * 4 3 2 6 6 C 1.46497 * 119.99765 * 275.27204 * 5 4 3 7 7 S 1.65601 * 120.00260 * 95.26670 * 5 4 3 8 8 O 1.42099 * 106.40141 * 329.52421 * 7 5 4 9 9 O 1.42097 * 106.40283 * 196.60273 * 7 5 4 10 10 C 1.76202 * 107.21588 * 83.06243 * 7 5 4 11 11 C 1.38640 * 119.75482 * 246.38760 * 10 7 5 12 12 C 1.37600 * 120.25666 * 180.29590 * 11 10 7 13 13 C 1.40739 * 119.77355 * 359.72730 * 12 11 10 14 14 C 1.41404 * 120.23603 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99993 * 30.89880 * 14 13 12 16 16 C 1.39944 * 119.99739 * 210.89976 * 14 13 12 17 17 N 1.30822 * 120.00391 * 14.54597 * 16 14 13 18 18 Si 1.86803 * 119.99835 * 194.55076 * 16 14 13 19 19 H 1.48497 * 109.47440 * 59.99411 * 18 16 14 20 20 H 1.48498 * 109.46989 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46897 * 299.99829 * 18 16 14 22 22 C 1.40674 * 119.52747 * 359.97438 * 13 12 11 23 23 C 1.37752 * 119.73092 * 359.97438 * 22 13 12 24 24 Cl 1.73593 * 119.89203 * 179.97438 * 23 22 13 25 25 H 1.08997 * 109.47255 * 268.46920 * 1 2 3 26 26 H 1.08991 * 109.47383 * 28.47714 * 1 2 3 27 27 H 1.09008 * 109.46787 * 148.47113 * 1 2 3 28 28 H 1.09000 * 109.47247 * 331.52299 * 4 3 2 29 29 H 1.08999 * 109.46733 * 211.52634 * 4 3 2 30 30 H 1.08997 * 109.47131 * 269.99479 * 6 5 4 31 31 H 1.08997 * 109.47444 * 30.00043 * 6 5 4 32 32 H 1.09007 * 109.47141 * 149.99659 * 6 5 4 33 33 H 1.07995 * 119.87444 * 0.02562 * 11 10 7 34 34 H 1.08004 * 120.11082 * 179.70128 * 12 11 10 35 35 H 0.96999 * 120.00223 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.13488 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6063 0.0391 -1.3807 6 6 4.7417 -1.2042 -2.1435 7 16 5.0052 1.4867 -2.0792 8 8 4.1639 2.4648 -1.4837 9 8 5.0573 1.2553 -3.4802 10 6 6.6495 1.8725 -1.5771 11 6 6.8795 2.9653 -0.7555 12 6 8.1601 3.2796 -0.3621 13 6 9.2384 2.4838 -0.7919 14 6 10.5583 2.7975 -0.3931 15 1 10.7362 3.2677 0.5627 16 6 11.6339 2.4987 -1.2369 17 7 11.4173 2.1991 -2.4918 18 14 13.3791 2.5275 -0.5715 19 1 13.5045 1.5421 0.5323 20 1 14.3290 2.1781 -1.6581 21 1 13.6913 3.8861 -0.0597 22 6 8.9937 1.3734 -1.6202 23 6 7.7036 1.0764 -2.0012 24 17 7.3970 -0.2924 -3.0238 25 1 -0.3633 -0.0275 1.0273 26 1 -0.3633 0.9032 -0.4899 27 1 -0.3633 -0.8760 -0.5374 28 1 4.4821 -0.9012 0.4900 29 1 4.4805 0.8782 0.5374 30 1 5.7402 -1.6152 -1.9943 31 1 3.9978 -1.9235 -1.8010 32 1 4.5879 -0.9991 -3.2030 33 1 6.0510 3.5749 -0.4266 34 1 8.3371 4.1343 0.2740 35 1 12.1628 1.9916 -3.0766 36 1 9.8138 0.7559 -1.9555 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451589568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:16 Heat of formation + Delta-G solvation = -32.648327 kcal Electronic energy + Delta-G solvation = -23102.156670 eV Core-core repulsion = 19511.560382 eV Total energy + Delta-G solvation = -3590.596287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.62860 -38.29815 -37.78333 -37.32014 -36.81791 -35.77334 -34.63287 -32.08840 -31.27728 -30.59648 -27.88435 -27.70471 -25.51277 -23.51170 -23.09710 -20.11995 -19.56850 -18.97243 -18.36839 -17.82854 -17.23354 -17.08564 -16.18358 -16.00118 -15.46051 -15.25949 -15.01011 -14.81292 -14.50593 -14.44459 -14.27351 -14.12184 -14.02811 -13.79308 -13.52989 -13.37706 -13.05221 -12.96658 -12.83800 -12.73627 -12.69288 -12.15277 -12.08079 -12.00748 -11.85364 -11.31120 -11.18282 -10.91567 -10.61819 -10.23569 -9.83650 -9.49718 -8.90188 -6.73134 -0.48668 0.27305 0.81844 1.21295 1.37388 1.43295 1.51788 1.56082 1.77704 2.10940 2.24890 2.48023 2.82576 3.31478 3.37379 3.50969 3.86391 4.18366 4.40788 4.50443 4.64495 4.67720 4.79386 4.80567 4.82467 4.84319 4.89728 4.92864 4.99727 5.05154 5.08948 5.21655 5.38085 5.47928 5.59849 5.78878 5.99647 6.31116 6.58746 6.61969 6.70573 8.05762 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.003725 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.464336 B = 7515.831998 C = 7953.770773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.182 4.182 3 C -0.236 4.236 4 C 0.235 3.765 5 N -0.993 5.993 6 C 0.081 3.919 7 S 2.710 3.290 8 O -0.993 6.993 9 O -0.987 6.987 10 C -0.799 4.799 11 C 0.003 3.997 12 C -0.242 4.242 13 C 0.121 3.879 14 C -0.456 4.456 15 H 0.103 0.897 16 C 0.033 3.967 17 N -0.799 5.799 18 Si 0.993 3.007 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.254 1.254 22 C -0.183 4.183 23 C 0.068 3.932 24 Cl -0.079 7.079 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.300 0.700 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 -6.853 5.154 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.184 4.184 3 C -0.238 4.238 4 C 0.111 3.889 5 N -0.830 5.830 6 C -0.064 4.064 7 S 2.806 3.194 8 O -0.983 6.983 9 O -0.977 6.977 10 C -0.892 4.892 11 C -0.017 4.017 12 C -0.263 4.263 13 C 0.117 3.883 14 C -0.483 4.483 15 H 0.120 0.880 16 C -0.187 4.187 17 N -0.422 5.422 18 Si 0.812 3.188 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.178 1.178 22 C -0.204 4.204 23 C 0.039 3.961 24 Cl -0.050 7.050 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.335 -6.576 4.246 12.183 hybrid contribution 1.510 -0.050 0.067 1.512 sum -7.826 -6.626 4.313 11.124 Atomic orbital electron populations 1.19145 0.82086 1.04164 1.04655 1.23473 0.95302 1.01344 0.98284 1.23272 0.94873 1.02006 1.03610 1.18222 0.83111 1.05855 0.81700 1.57312 1.79312 1.23028 1.23397 1.21867 1.03193 0.85332 0.95991 1.00890 0.73485 0.72265 0.72799 1.93456 1.66394 1.59606 1.78893 1.93491 1.87957 1.85326 1.30958 1.29523 1.20034 1.12946 1.26659 1.20490 0.97493 0.92352 0.91397 1.21396 0.92583 1.02683 1.09612 1.18081 0.94108 0.88378 0.87701 1.20236 0.90670 1.33117 1.04254 0.87955 1.27041 1.06668 0.90936 0.94012 1.69828 1.37401 1.29213 1.05767 0.85056 0.74028 0.80555 0.79126 1.17788 1.19239 1.17781 1.21168 0.93384 1.00126 1.05714 1.20189 0.94569 0.88452 0.92860 1.98303 1.95519 1.43676 1.67503 0.88058 0.89516 0.88461 0.85022 0.88108 0.91665 0.88521 0.91107 0.84672 0.85778 0.88877 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.71 10.32 70.18 0.72 0.01 16 2 C -0.18 -4.74 14.13 31.13 0.44 -4.30 16 3 C -0.24 -6.79 13.67 31.13 0.43 -6.37 16 4 C 0.24 6.41 5.80 84.57 0.49 6.90 16 5 N -0.99 -31.72 3.13 -549.10 -1.72 -33.44 16 6 C 0.08 2.20 9.01 127.77 1.15 3.35 16 7 S 2.71 109.41 5.04 -56.49 -0.28 109.13 16 8 O -0.99 -42.71 16.17 -128.00 -2.07 -44.78 16 9 O -0.99 -44.01 14.88 -128.00 -1.91 -45.91 16 10 C -0.80 -35.28 5.94 22.48 0.13 -35.14 16 11 C 0.00 0.11 9.52 22.22 0.21 0.32 16 12 C -0.24 -10.99 9.79 22.73 0.22 -10.77 16 13 C 0.12 5.98 5.50 -21.29 -0.12 5.86 16 14 C -0.46 -21.47 9.04 23.46 0.21 -21.26 16 15 H 0.10 4.43 7.89 -2.91 -0.02 4.41 16 16 C 0.03 1.47 5.16 85.26 0.44 1.91 16 17 N -0.80 -37.98 11.21 21.83 0.24 -37.74 16 18 Si 0.99 33.09 29.58 68.60 2.03 35.12 16 19 H -0.25 -8.21 7.11 99.48 0.71 -7.50 16 20 H -0.27 -8.61 7.11 99.48 0.71 -7.90 16 21 H -0.25 -8.14 7.11 99.48 0.71 -7.44 16 22 C -0.18 -9.05 8.43 22.75 0.19 -8.86 16 23 C 0.07 3.11 6.29 22.27 0.14 3.25 16 24 Cl -0.08 -3.15 22.99 -2.72 -0.06 -3.22 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.13 2.67 8.11 -2.39 -0.02 2.65 16 29 H 0.10 2.76 7.79 -2.39 -0.02 2.74 16 30 H 0.06 1.73 6.21 -2.39 -0.01 1.71 16 31 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 32 H 0.07 2.09 7.00 -2.38 -0.02 2.07 16 33 H 0.14 5.29 7.31 -2.91 -0.02 5.26 16 34 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.30 12.81 8.30 -92.71 -0.77 12.04 16 36 H 0.12 5.90 6.54 -2.91 -0.02 5.88 16 Total: -1.00 -63.41 336.62 2.02 -61.39 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.12 Total: 24.54 kcal Atomic # 6 Polarization: -69.76 SS G_CDS: 4.67 Total: -65.09 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.47 Total: -71.18 kcal Atomic # 8 Polarization: -86.72 SS G_CDS: -3.97 Total: -90.69 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Atomic # 16 Polarization: 109.41 SS G_CDS: -0.28 Total: 109.13 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -0.06 Total: -3.22 kcal Total: -63.41 2.02 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451589568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.741 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds