Wall clock time and date at job start Tue Mar 31 2020 15:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99778 * 2 1 4 4 N 1.46499 * 109.46824 * 125.00069 * 3 2 1 5 5 C 1.46507 * 120.00262 * 274.96626 * 4 3 2 6 6 C 1.50699 * 109.47041 * 270.00259 * 5 4 3 7 7 H 1.08006 * 120.00173 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99908 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00118 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00014 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47427 * 59.99531 * 10 8 6 12 12 H 1.48493 * 109.47248 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46826 * 299.99614 * 10 8 6 14 14 C 1.34777 * 120.00155 * 94.97075 * 4 3 2 15 15 O 1.21565 * 119.99996 * 185.55767 * 14 4 3 16 16 C 1.47774 * 119.99990 * 5.55185 * 14 4 3 17 17 C 1.39628 * 120.14834 * 55.06500 * 16 14 4 18 18 C 1.37901 * 119.89141 * 179.75159 * 17 16 14 19 19 C 1.38399 * 120.19586 * 0.27360 * 18 17 16 20 20 C 1.50700 * 119.84904 * 179.97438 * 19 18 17 21 21 C 1.38377 * 120.30446 * 359.95670 * 19 18 17 22 22 Cl 1.73597 * 119.94754 * 180.02562 * 21 19 18 23 23 C 1.38275 * 120.10592 * 0.02562 * 21 19 18 24 24 Cl 1.73593 * 120.10110 * 180.02562 * 23 21 19 25 25 H 1.07996 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99946 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00470 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47022 * 5.00601 * 3 2 1 29 29 H 1.08993 * 109.47067 * 244.99577 * 3 2 1 30 30 H 1.09000 * 109.46789 * 30.00082 * 5 4 3 31 31 H 1.08998 * 109.47103 * 150.00379 * 5 4 3 32 32 H 0.96991 * 120.00111 * 180.02562 * 9 8 6 33 33 H 1.08004 * 120.05331 * 0.02767 * 17 16 14 34 34 H 1.08003 * 119.89923 * 180.25909 * 18 17 16 35 35 H 1.09005 * 109.47114 * 90.00012 * 20 19 18 36 36 H 1.08993 * 109.47266 * 209.99770 * 20 19 18 37 37 H 1.09000 * 109.47047 * 330.00387 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7628 2.4522 6 6 2.7147 3.2520 2.5891 7 1 3.1367 3.8207 1.7737 8 6 2.3451 3.8885 3.7550 9 7 1.8297 3.1963 4.7473 10 14 2.5751 5.7346 3.9245 11 1 1.7914 6.4298 2.8721 12 1 2.1027 6.1715 5.2627 13 1 4.0138 6.0700 3.7731 14 6 4.2774 0.9603 0.9573 15 8 5.0236 0.8853 1.9141 16 6 4.7779 0.6437 -0.3966 17 6 4.6473 1.5756 -1.4281 18 6 5.1208 1.2767 -2.6883 19 6 5.7199 0.0537 -2.9349 20 6 6.2341 -0.2649 -4.3151 21 6 5.8493 -0.8777 -1.9197 22 17 6.6029 -2.4086 -2.2391 23 6 5.3792 -0.5909 -0.6513 24 17 5.5422 -1.7592 0.6223 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4026 -0.9313 30 1 1.4725 1.5168 2.5635 31 1 3.1039 1.2522 3.2244 32 1 1.5694 3.6441 5.5673 33 1 4.1801 2.5307 -1.2383 34 1 5.0236 1.9991 -3.4853 35 1 7.2724 0.0560 -4.3991 36 1 6.1709 -1.3393 -4.4873 37 1 5.6310 0.2581 -5.0572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451963756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:32 Heat of formation + Delta-G solvation = -0.198008 kcal Electronic energy + Delta-G solvation = -23154.770549 eV Core-core repulsion = 19563.537707 eV Total energy + Delta-G solvation = -3591.232842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.24415 -38.47322 -36.61511 -36.50992 -35.69601 -33.30191 -32.94675 -32.02741 -30.82939 -28.37583 -27.03091 -25.48656 -23.43191 -22.97233 -21.87090 -19.98661 -19.15824 -17.15938 -16.65021 -16.26764 -16.11771 -15.66229 -15.18008 -14.62433 -14.47738 -14.26643 -14.25332 -13.92164 -13.14110 -12.93893 -12.84537 -12.62191 -12.22080 -12.14693 -11.88085 -11.86139 -11.62430 -11.33709 -11.16962 -11.10251 -11.07125 -10.91746 -10.75958 -10.60477 -10.22632 -9.70536 -9.22080 -9.17052 -8.81918 -8.75377 -8.45216 -7.75606 -6.06759 -4.12415 0.71570 0.82588 1.74734 2.15887 2.46467 3.01145 3.29621 3.34855 3.37016 3.50449 3.82695 4.39035 4.45319 4.59322 4.83412 4.88272 5.05623 5.19685 5.26942 5.28203 5.31417 5.34876 5.43900 5.59213 5.71323 5.76790 5.95812 6.01447 6.06659 6.18172 6.37150 6.82357 6.91206 7.04928 7.41637 7.47563 7.88603 8.18682 8.28149 8.80474 8.96435 9.52544 11.01298 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003844 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.885035 B = 7282.286242 C = 7317.106992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.165 4.165 3 C 0.126 3.874 4 N -0.582 5.582 5 C 0.248 3.752 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.096 4.096 17 C -0.073 4.073 18 C -0.110 4.110 19 C -0.058 4.058 20 C -0.119 4.119 21 C -0.040 4.040 22 Cl -0.049 7.049 23 C 0.007 3.993 24 Cl -0.029 7.029 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -7.883 -19.453 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 C 0.003 3.997 4 N -0.312 5.312 5 C 0.129 3.871 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.334 3.666 15 O -0.390 6.390 16 C -0.101 4.101 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.059 4.059 20 C -0.175 4.175 21 C -0.068 4.068 22 Cl -0.020 7.020 23 C -0.022 4.022 24 Cl 0.001 6.999 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.372 -8.136 -18.604 20.771 hybrid contribution 0.089 0.767 0.314 0.834 sum 4.461 -7.369 -18.290 20.217 Atomic orbital electron populations 1.23797 0.95748 1.01752 1.00625 1.23361 0.96359 0.98924 0.99815 1.20827 0.93195 0.95645 0.90054 1.48152 1.07462 1.63219 1.12411 1.19335 0.95403 0.94941 0.77383 1.21367 1.42263 0.92544 1.00756 0.92468 1.24918 0.94978 0.98544 0.95460 1.69921 1.42038 1.35952 1.05153 0.86568 0.78647 0.85040 0.77228 1.20229 1.21147 1.20154 1.17865 0.83178 0.78711 0.86860 1.90810 1.55755 1.51828 1.40607 1.20169 1.00471 0.93050 0.96401 1.21423 0.97095 0.99253 0.91351 1.21018 0.98596 0.95908 0.97331 1.19812 0.97891 0.92836 0.95357 1.20905 1.01709 1.03297 0.91608 1.20479 1.03254 0.89937 0.93094 1.98364 1.80120 1.28134 1.95413 1.20724 1.00398 0.91958 0.89090 1.98419 1.95942 1.56283 1.49291 0.88261 0.88761 0.87898 0.89351 0.90164 0.94651 0.93564 0.92590 0.83531 0.83993 0.90248 0.90604 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.02 0.42 -2.01 16 2 C -0.17 -2.48 9.84 -36.02 -0.35 -2.83 16 3 C 0.13 2.05 5.67 -5.19 -0.03 2.02 16 4 N -0.58 -12.21 2.44 -177.57 -0.43 -12.65 16 5 C 0.25 6.40 5.22 -5.19 -0.03 6.38 16 6 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 7 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 14 C 0.55 11.62 6.53 -12.36 -0.08 11.53 16 15 O -0.51 -13.04 15.78 5.31 0.08 -12.96 16 16 C -0.10 -1.60 4.90 -104.94 -0.51 -2.11 16 17 C -0.07 -0.94 7.48 -39.19 -0.29 -1.24 16 18 C -0.11 -1.11 9.68 -39.65 -0.38 -1.49 16 19 C -0.06 -0.60 5.89 -104.51 -0.62 -1.22 16 20 C -0.12 -0.86 9.60 36.01 0.35 -0.51 16 21 C -0.04 -0.51 6.31 -39.52 -0.25 -0.76 16 22 Cl -0.05 -0.57 26.27 -51.86 -1.36 -1.93 16 23 C 0.01 0.11 6.35 -39.03 -0.25 -0.14 16 24 Cl -0.03 -0.48 26.42 -51.86 -1.37 -1.85 16 25 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.09 1.45 7.76 -51.93 -0.40 1.04 16 29 H 0.08 1.10 4.42 -51.93 -0.23 0.87 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.15 1.79 7.58 -52.48 -0.40 1.39 16 34 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.55 6.88 -51.93 -0.36 0.19 16 37 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -32.16 348.13 -8.83 -40.99 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.26 Total: -2.10 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.45 Total: -5.67 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.30 Total: -38.14 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.73 Total: -3.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.16 -8.83 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451963756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.793 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds