Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99778 * 2 1 4 4 N 1.46499 * 109.46824 * 125.00069 * 3 2 1 5 5 C 1.46507 * 120.00262 * 274.96626 * 4 3 2 6 6 C 1.50699 * 109.47041 * 270.00259 * 5 4 3 7 7 H 1.08006 * 120.00173 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99908 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00118 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00014 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47427 * 59.99531 * 10 8 6 12 12 H 1.48493 * 109.47248 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46826 * 299.99614 * 10 8 6 14 14 C 1.34777 * 120.00155 * 94.97075 * 4 3 2 15 15 O 1.21565 * 119.99996 * 185.55767 * 14 4 3 16 16 C 1.47774 * 119.99990 * 5.55185 * 14 4 3 17 17 C 1.39628 * 120.14834 * 55.06500 * 16 14 4 18 18 C 1.37901 * 119.89141 * 179.75159 * 17 16 14 19 19 C 1.38399 * 120.19586 * 0.27360 * 18 17 16 20 20 C 1.50700 * 119.84904 * 179.97438 * 19 18 17 21 21 C 1.38377 * 120.30446 * 359.95670 * 19 18 17 22 22 Cl 1.73597 * 119.94754 * 180.02562 * 21 19 18 23 23 C 1.38275 * 120.10592 * 0.02562 * 21 19 18 24 24 Cl 1.73593 * 120.10110 * 180.02562 * 23 21 19 25 25 H 1.07996 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99946 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00470 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47022 * 5.00601 * 3 2 1 29 29 H 1.08993 * 109.47067 * 244.99577 * 3 2 1 30 30 H 1.09000 * 109.46789 * 30.00082 * 5 4 3 31 31 H 1.08998 * 109.47103 * 150.00379 * 5 4 3 32 32 H 0.96991 * 120.00111 * 180.02562 * 9 8 6 33 33 H 1.08004 * 120.05331 * 0.02767 * 17 16 14 34 34 H 1.08003 * 119.89923 * 180.25909 * 18 17 16 35 35 H 1.09005 * 109.47114 * 90.00012 * 20 19 18 36 36 H 1.08993 * 109.47266 * 209.99770 * 20 19 18 37 37 H 1.09000 * 109.47047 * 330.00387 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7628 2.4522 6 6 2.7147 3.2520 2.5891 7 1 3.1367 3.8207 1.7737 8 6 2.3451 3.8885 3.7550 9 7 1.8297 3.1963 4.7473 10 14 2.5751 5.7346 3.9245 11 1 1.7914 6.4298 2.8721 12 1 2.1027 6.1715 5.2627 13 1 4.0138 6.0700 3.7731 14 6 4.2774 0.9603 0.9573 15 8 5.0236 0.8853 1.9141 16 6 4.7779 0.6437 -0.3966 17 6 4.6473 1.5756 -1.4281 18 6 5.1208 1.2767 -2.6883 19 6 5.7199 0.0537 -2.9349 20 6 6.2341 -0.2649 -4.3151 21 6 5.8493 -0.8777 -1.9197 22 17 6.6029 -2.4086 -2.2391 23 6 5.3792 -0.5909 -0.6513 24 17 5.5422 -1.7592 0.6223 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4026 -0.9313 30 1 1.4725 1.5168 2.5635 31 1 3.1039 1.2522 3.2244 32 1 1.5694 3.6441 5.5673 33 1 4.1801 2.5307 -1.2383 34 1 5.0236 1.9991 -3.4853 35 1 7.2724 0.0560 -4.3991 36 1 6.1709 -1.3393 -4.4873 37 1 5.6310 0.2581 -5.0572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451963756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -18.024528 kcal Electronic energy + Delta-G solvation = -23155.543565 eV Core-core repulsion = 19563.537707 eV Total energy + Delta-G solvation = -3592.005858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51590 -39.81092 -37.71881 -37.57960 -37.25445 -35.14424 -34.00849 -33.61962 -31.84229 -29.95420 -28.31162 -26.93790 -25.14792 -23.98787 -23.10875 -21.28277 -20.51542 -18.67740 -18.47782 -17.67124 -17.32061 -17.01987 -16.49618 -16.18472 -15.78577 -15.47009 -15.34767 -15.17339 -14.44181 -14.31737 -14.14389 -13.79688 -13.41815 -13.36291 -13.21649 -13.04540 -12.90539 -12.85888 -12.58718 -12.57780 -12.27650 -12.25778 -12.18365 -12.12272 -11.84982 -11.69602 -10.81821 -10.63177 -10.38522 -9.86043 -9.81468 -9.50116 -8.21239 -6.36550 -0.33418 -0.17097 0.70529 1.07918 1.27820 1.38732 1.43184 1.50178 1.70077 2.21542 2.33935 2.46250 3.09047 3.35728 3.70405 3.73420 3.97094 4.04903 4.10090 4.20040 4.31678 4.37762 4.58123 4.76324 4.80427 4.83551 4.99426 5.02127 5.05087 5.18624 5.21957 5.22891 5.47933 5.54211 5.68435 5.73775 5.90951 6.04758 6.60119 6.72438 7.20775 7.37506 8.86323 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003844 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.885035 B = 7282.286242 C = 7317.106992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.126 3.874 4 N -0.586 5.586 5 C 0.266 3.734 6 C -0.543 4.543 7 H 0.060 0.940 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.256 1.256 12 H -0.282 1.282 13 H -0.277 1.277 14 C 0.546 3.454 15 O -0.573 6.573 16 C -0.122 4.122 17 C -0.074 4.074 18 C -0.088 4.088 19 C -0.042 4.042 20 C -0.119 4.119 21 C -0.048 4.048 22 Cl -0.040 7.040 23 C -0.009 4.009 24 Cl -0.056 7.056 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.023 0.977 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.155 0.845 34 H 0.190 0.810 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -6.420 -23.420 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.145 3.855 6 C -0.582 4.582 7 H 0.079 0.921 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.181 1.181 12 H -0.207 1.207 13 H -0.203 1.203 14 C 0.334 3.666 15 O -0.453 6.453 16 C -0.127 4.127 17 C -0.092 4.092 18 C -0.106 4.106 19 C -0.043 4.043 20 C -0.175 4.175 21 C -0.075 4.075 22 Cl -0.011 7.011 23 C -0.038 4.038 24 Cl -0.026 7.026 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.127 0.873 30 H 0.041 0.959 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.207 0.793 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.231 -6.686 -22.632 23.975 hybrid contribution 0.123 0.236 1.434 1.458 sum 4.353 -6.450 -21.198 22.581 Atomic orbital electron populations 1.24040 0.95177 1.03072 0.97736 1.23243 0.96952 0.98076 1.02435 1.21056 0.92763 0.96357 0.89393 1.48096 1.08568 1.62902 1.11925 1.18742 0.93647 0.94026 0.79068 1.21660 1.42110 0.93290 1.01109 0.92136 1.25866 0.94448 1.03696 0.94986 1.70060 1.42971 1.38073 1.05731 0.85457 0.78541 0.78943 0.77826 1.18055 1.20685 1.20254 1.18554 0.82476 0.77181 0.88391 1.90757 1.57151 1.54208 1.43166 1.19772 1.03322 0.94925 0.94651 1.21597 0.97314 0.98667 0.91643 1.21491 0.95968 0.96268 0.96875 1.20338 0.95829 0.91994 0.96183 1.21055 1.02871 1.03854 0.89757 1.20660 1.03270 0.91040 0.92561 1.98367 1.79859 1.27662 1.95213 1.20840 1.01835 0.91491 0.89602 1.98402 1.96178 1.57199 1.50854 0.87558 0.86755 0.88440 0.89509 0.87269 0.95892 0.98578 0.92436 0.82742 0.79263 0.88826 0.90619 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 14.32 67.79 0.97 -3.17 16 2 C -0.19 -5.60 9.84 25.65 0.25 -5.35 16 3 C 0.13 4.08 5.67 85.63 0.49 4.57 16 4 N -0.59 -25.62 2.44 -833.99 -2.04 -27.66 16 5 C 0.27 14.55 5.22 85.63 0.45 15.00 16 6 C -0.54 -30.86 9.39 25.60 0.24 -30.62 16 7 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 8 C 0.01 0.52 5.46 84.65 0.46 0.99 16 9 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 10 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.55 24.24 6.53 86.77 0.57 24.81 16 15 O -0.57 -31.19 15.78 -3.92 -0.06 -31.25 16 16 C -0.12 -4.07 4.90 -20.07 -0.10 -4.17 16 17 C -0.07 -1.74 7.48 22.53 0.17 -1.58 16 18 C -0.09 -1.37 9.68 22.23 0.22 -1.16 16 19 C -0.04 -0.72 5.89 -19.79 -0.12 -0.84 16 20 C -0.12 -1.13 9.60 71.24 0.68 -0.45 16 21 C -0.05 -1.14 6.31 22.31 0.14 -1.00 16 22 Cl -0.04 -0.87 26.27 -2.72 -0.07 -0.94 16 23 C -0.01 -0.29 6.35 22.63 0.14 -0.15 16 24 Cl -0.06 -1.96 26.42 -2.72 -0.07 -2.03 16 25 H 0.11 2.56 7.84 -2.91 -0.02 2.54 16 26 H 0.11 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.10 3.01 8.06 -2.91 -0.02 2.98 16 28 H 0.09 2.81 7.76 -2.39 -0.02 2.79 16 29 H 0.11 2.84 4.42 -2.39 -0.01 2.83 16 30 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 31 H 0.00 -0.25 7.35 -2.39 -0.02 -0.27 16 32 H 0.27 15.22 8.31 -92.72 -0.77 14.45 16 33 H 0.16 3.38 7.58 -2.91 -0.02 3.36 16 34 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.78 6.88 -2.39 -0.02 0.77 16 37 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16 Total: -1.00 -75.60 348.13 5.72 -69.88 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.09 Total: 4.96 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.56 Total: -3.11 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.75 Total: -83.70 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.25 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.14 Total: -2.98 kcal Total: -75.60 5.72 -69.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451963756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.854 kcal (2) G-P(sol) polarization free energy of solvation -75.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds