Wall clock time and date at job start Tue Mar 31 2020 15:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00300 * 2 1 4 4 C 1.53001 * 109.47260 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46933 * 77.79703 * 4 3 2 6 6 C 1.36931 * 119.99638 * 286.46667 * 5 4 3 7 7 H 1.07999 * 120.00620 * 355.26359 * 6 5 4 8 8 C 1.38819 * 119.99844 * 175.25568 * 6 5 4 9 9 N 1.31614 * 119.99751 * 38.96667 * 8 6 5 10 10 Si 1.86793 * 120.00047 * 218.96694 * 8 6 5 11 11 H 1.48503 * 109.47428 * 59.99998 * 10 8 6 12 12 H 1.48502 * 109.47393 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47234 * 299.99973 * 10 8 6 14 14 C 1.46494 * 120.00013 * 106.75253 * 5 4 3 15 15 C 1.50707 * 109.46624 * 263.69363 * 14 5 4 16 16 C 1.38241 * 120.00280 * 265.38449 * 15 14 5 17 17 C 1.38216 * 120.00770 * 179.74774 * 16 15 14 18 18 C 1.38266 * 120.02156 * 0.55452 * 17 16 15 19 19 C 1.50696 * 119.99428 * 179.72187 * 18 17 16 20 20 C 1.38192 * 120.00924 * 359.70286 * 18 17 16 21 21 C 1.38298 * 120.00777 * 85.67123 * 15 14 5 22 22 Br 1.89107 * 120.01033 * 359.97438 * 21 15 14 23 23 H 1.08996 * 109.47311 * 299.99997 * 1 2 3 24 24 H 1.09001 * 109.46813 * 60.00026 * 1 2 3 25 25 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46913 * 59.99815 * 3 2 1 27 27 H 1.09003 * 109.47095 * 299.99724 * 3 2 1 28 28 H 1.08996 * 109.47106 * 317.79262 * 4 3 2 29 29 H 1.09006 * 109.46903 * 197.79471 * 4 3 2 30 30 H 0.97003 * 119.99749 * 183.52475 * 9 8 6 31 31 H 1.09002 * 109.47376 * 23.68531 * 14 5 4 32 32 H 1.08998 * 109.47673 * 143.69577 * 14 5 4 33 33 H 1.08000 * 119.99292 * 0.02562 * 16 15 14 34 34 H 1.08008 * 119.99040 * 180.28089 * 17 16 15 35 35 H 1.09001 * 109.47449 * 269.97799 * 19 18 17 36 36 H 1.09007 * 109.47473 * 29.98150 * 19 18 17 37 37 H 1.09004 * 109.47151 * 149.97935 * 19 18 17 38 38 H 1.08000 * 120.00998 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9997 0.8547 -1.3492 6 6 3.8110 -0.4061 -1.8490 7 1 3.3897 -1.1781 -1.2222 8 6 4.1611 -0.6920 -3.1615 9 7 5.2555 -0.1747 -3.6782 10 14 3.0790 -1.8107 -4.1943 11 1 1.7208 -1.2208 -4.3057 12 1 3.6686 -1.9565 -5.5494 13 1 2.9878 -3.1450 -3.5486 14 6 4.6714 1.8719 -2.1617 15 6 3.6706 2.5197 -3.0835 16 6 3.5167 2.0520 -4.3753 17 6 2.5951 2.6427 -5.2192 18 6 1.8348 3.7090 -4.7755 19 6 0.8347 4.3566 -5.6981 20 6 1.9917 4.1806 -3.4861 21 6 2.9101 3.5860 -2.6393 22 35 3.1254 4.2310 -0.8747 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8373 0.3972 0.6913 29 1 3.9748 2.1314 0.3147 30 1 5.4734 -0.3327 -4.6101 31 1 5.1073 2.6285 -1.5093 32 1 5.4591 1.4036 -2.7520 33 1 4.1135 1.2220 -4.7237 34 1 2.4719 2.2741 -6.2269 35 1 1.3172 5.1651 -6.2473 36 1 0.4559 3.6151 -6.4016 37 1 0.0073 4.7581 -5.1129 38 1 1.3976 5.0132 -3.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453598380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:48 Heat of formation + Delta-G solvation = 16.682643 kcal Electronic energy + Delta-G solvation = -21245.370663 eV Core-core repulsion = 18135.566065 eV Total energy + Delta-G solvation = -3109.804598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.96380 -37.29403 -35.61760 -32.64134 -32.00508 -31.04739 -29.03328 -28.63490 -27.35668 -25.74493 -24.53057 -22.82428 -21.84232 -20.72311 -19.76478 -16.97246 -15.76286 -15.72201 -15.19122 -14.98075 -14.49228 -14.32077 -14.25769 -13.59903 -13.39857 -13.17986 -12.84711 -12.61374 -12.15178 -12.03071 -11.82262 -11.45471 -11.29481 -11.13303 -10.80995 -10.71654 -10.45238 -10.37993 -10.25504 -10.15508 -9.90159 -9.64973 -9.30931 -8.89665 -8.47877 -8.13388 -7.74033 -6.93918 -5.79131 -3.04597 1.77606 1.98927 2.21758 3.44636 3.51267 3.60910 4.25998 4.54604 4.58497 5.17876 5.22006 5.36227 5.51321 5.54566 5.69242 5.71701 5.76215 5.79996 5.96319 6.01665 6.04283 6.12687 6.20478 6.24897 6.28008 6.40034 6.46902 6.62645 6.76029 6.85954 6.95654 7.13372 7.38528 7.58353 7.76510 7.92243 7.93886 8.38378 9.18436 9.85592 10.27213 11.13930 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.010863 B = 0.008511 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.887455 B = 3289.194748 C = 4329.966322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.373 6.373 3 C 0.050 3.950 4 C 0.146 3.854 5 N -0.575 5.575 6 C -0.220 4.220 7 H 0.086 0.914 8 C -0.001 4.001 9 N -0.879 5.879 10 Si 0.861 3.139 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.284 1.284 14 C 0.141 3.859 15 C -0.035 4.035 16 C -0.090 4.090 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.089 4.089 22 Br -0.074 7.074 23 H 0.028 0.972 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.253 0.747 31 H 0.036 0.964 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 10.321 1.989 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.292 6.292 3 C -0.029 4.029 4 C 0.019 3.981 5 N -0.293 5.293 6 C -0.347 4.347 7 H 0.104 0.896 8 C -0.197 4.197 9 N -0.527 5.527 10 Si 0.690 3.310 11 H -0.215 1.215 12 H -0.219 1.219 13 H -0.210 1.210 14 C 0.015 3.985 15 C -0.040 4.040 16 C -0.110 4.110 17 C -0.138 4.138 18 C -0.110 4.110 19 C -0.161 4.161 20 C -0.126 4.126 21 C -0.169 4.169 22 Br 0.011 6.989 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.672 10.291 2.574 12.029 hybrid contribution -1.358 -0.384 -1.089 1.783 sum -7.031 9.907 1.485 12.239 Atomic orbital electron populations 1.22592 0.83413 1.01554 0.98758 1.88012 1.17571 1.28564 1.95042 1.23453 0.97338 0.83883 0.98258 1.21020 0.90185 0.99102 0.87755 1.44067 1.66006 1.07968 1.11231 1.19301 1.32760 0.87754 0.94931 0.89586 1.24348 0.97697 0.99675 0.97967 1.69968 1.20080 1.48653 1.13996 0.86899 0.83106 0.80887 0.80063 1.21495 1.21902 1.21048 1.20975 0.94780 0.90326 0.92451 1.20974 0.96824 0.90832 0.95383 1.21870 0.97000 0.99415 0.92684 1.21203 0.96848 0.96045 0.99667 1.19667 0.99200 0.97671 0.94457 1.20678 0.97112 1.00118 0.98227 1.20698 0.98445 1.00175 0.93328 1.21724 1.03044 1.01408 0.90720 1.96478 1.97333 1.86855 1.18208 0.95377 0.94934 0.90629 0.95589 0.93342 0.93636 0.91394 0.93499 0.94604 0.83990 0.83069 0.86829 0.91767 0.91947 0.92144 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.68 16 2 O -0.37 -7.81 9.77 -35.23 -0.34 -8.16 16 3 C 0.05 0.98 5.16 37.16 0.19 1.17 16 4 C 0.15 3.04 5.44 -4.04 -0.02 3.02 16 5 N -0.57 -13.72 2.59 -174.61 -0.45 -14.17 16 6 C -0.22 -5.83 8.96 -15.06 -0.13 -5.97 16 7 H 0.09 2.39 7.65 -52.49 -0.40 1.99 16 8 C 0.00 -0.04 3.58 -17.43 -0.06 -0.10 16 9 N -0.88 -23.06 8.56 55.49 0.48 -22.59 16 10 Si 0.86 21.36 29.58 -169.99 -5.03 16.33 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.14 3.21 4.89 -5.19 -0.03 3.18 16 15 C -0.04 -0.76 5.35 -104.60 -0.56 -1.32 16 16 C -0.09 -1.94 8.77 -39.59 -0.35 -2.29 16 17 C -0.12 -2.22 9.70 -39.58 -0.38 -2.60 16 18 C -0.11 -1.82 5.88 -104.63 -0.62 -2.43 16 19 C -0.10 -1.32 10.01 36.00 0.36 -0.96 16 20 C -0.11 -1.84 9.44 -39.56 -0.37 -2.21 16 21 C -0.09 -1.71 5.67 -39.52 -0.22 -1.93 16 22 Br -0.07 -1.23 27.43 -68.01 -1.87 -3.09 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.03 6.75 -51.93 -0.35 0.68 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.28 5.87 -51.93 -0.30 0.97 16 30 H 0.25 6.46 8.02 -40.82 -0.33 6.14 16 31 H 0.04 0.76 6.45 -51.93 -0.33 0.43 16 32 H 0.14 3.63 4.90 -51.93 -0.25 3.37 16 33 H 0.15 3.53 4.82 -52.49 -0.25 3.28 16 34 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 318.74 15.07 4.80 4.80 Total: -1.00 -27.52 318.74 -8.74 -36.27 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.24 Total: 1.38 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.08 Total: -10.76 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.02 Total: -36.76 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.34 Total: -8.16 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 35 Polarization: -1.23 SS G_CDS: -1.87 Total: -3.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.52 -8.74 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453598380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.948 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds