Wall clock time and date at job start Tue Mar 31 2020 15:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00463 * 2 1 4 4 C 1.52988 * 109.47454 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47253 * 57.11459 * 4 3 2 6 6 C 1.36936 * 119.99825 * 277.33233 * 5 4 3 7 7 H 1.08002 * 119.99808 * 350.11006 * 6 5 4 8 8 C 1.38810 * 119.99961 * 170.11016 * 6 5 4 9 9 N 1.31614 * 120.00212 * 42.39311 * 8 6 5 10 10 Si 1.86802 * 119.99753 * 222.39420 * 8 6 5 11 11 H 1.48501 * 109.47471 * 59.99763 * 10 8 6 12 12 H 1.48509 * 109.46906 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47096 * 299.99684 * 10 8 6 14 14 C 1.46503 * 120.00079 * 97.32811 * 5 4 3 15 15 C 1.50702 * 109.47073 * 265.23208 * 14 5 4 16 16 C 1.38263 * 119.98677 * 268.08954 * 15 14 5 17 17 C 1.38197 * 120.00838 * 179.76715 * 16 15 14 18 18 C 1.38348 * 119.98959 * 0.50761 * 17 16 15 19 19 Br 1.89092 * 120.01127 * 179.76553 * 18 17 16 20 20 C 1.38308 * 119.97634 * 359.75022 * 18 17 16 21 21 C 1.38216 * 119.98922 * 88.36238 * 15 14 5 22 22 C 1.50697 * 119.99618 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.46926 * 59.99812 * 1 2 3 24 24 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47345 * 299.99611 * 1 2 3 26 26 H 1.09000 * 109.46401 * 60.00043 * 3 2 1 27 27 H 1.09005 * 109.46972 * 300.00528 * 3 2 1 28 28 H 1.09003 * 109.47544 * 297.11155 * 4 3 2 29 29 H 1.09003 * 109.47350 * 177.10987 * 4 3 2 30 30 H 0.97003 * 120.00325 * 182.03744 * 9 8 6 31 31 H 1.08997 * 109.46585 * 25.22910 * 14 5 4 32 32 H 1.08997 * 109.46876 * 145.23064 * 14 5 4 33 33 H 1.08007 * 119.99492 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.00694 * 180.25432 * 17 16 15 35 35 H 1.08002 * 120.00349 * 180.02562 * 20 18 17 36 36 H 1.08993 * 109.47715 * 99.54811 * 22 21 15 37 37 H 1.09004 * 109.46604 * 219.54401 * 22 21 15 38 38 H 1.09002 * 109.47001 * 339.53811 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9635 0.3981 -1.1590 6 6 3.9409 -0.9700 -1.1045 7 1 3.7629 -1.4701 -0.1639 8 6 4.1467 -1.7140 -2.2581 9 7 5.0880 -1.3631 -3.1084 10 14 3.0874 -3.2133 -2.6039 11 1 1.6627 -2.8036 -2.6906 12 1 3.5052 -3.8287 -3.8893 13 1 3.2529 -4.1999 -1.5064 14 6 4.4157 1.0754 -2.3768 15 6 3.2618 1.2052 -3.3374 16 6 3.0397 0.2252 -4.2871 17 6 1.9788 0.3414 -5.1651 18 6 1.1451 1.4436 -5.1004 19 35 -0.3027 1.6064 -6.3057 20 6 1.3709 2.4262 -4.1536 21 6 2.4292 2.3065 -3.2723 22 6 2.6758 3.3775 -2.2412 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6887 1.8462 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8603 0.6891 0.9156 29 1 3.9787 2.1790 -0.0512 30 1 5.2124 -1.8654 -3.9289 31 1 4.7906 2.0669 -2.1232 32 1 5.2118 0.4938 -2.8416 33 1 3.6935 -0.6328 -4.3407 34 1 1.8029 -0.4261 -5.9043 35 1 0.7201 3.2866 -4.1024 36 1 3.1993 4.2139 -2.7041 37 1 1.7225 3.7225 -1.8406 38 1 3.2837 2.9707 -1.4330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453604338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:56 Heat of formation + Delta-G solvation = 22.151586 kcal Electronic energy + Delta-G solvation = -21485.952685 eV Core-core repulsion = 18376.385238 eV Total energy + Delta-G solvation = -3109.567447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -39.13412 -37.27006 -35.51847 -32.87850 -31.97530 -31.02446 -29.57551 -28.54001 -26.56653 -25.73141 -25.13968 -23.20415 -21.49851 -20.66860 -19.60645 -17.08294 -15.92073 -15.66697 -15.41180 -14.99706 -14.48262 -14.30390 -14.18428 -13.57615 -13.36237 -13.01007 -12.79689 -12.60896 -12.35520 -12.05446 -11.88100 -11.43192 -11.19658 -10.91358 -10.77363 -10.75025 -10.48120 -10.37050 -10.28652 -9.97856 -9.93502 -9.90449 -9.66400 -8.89929 -8.43390 -8.13883 -7.71852 -6.95744 -5.89503 -3.04365 1.81710 2.00070 2.06804 3.45403 3.53770 3.66102 4.27811 4.51882 4.57201 5.12696 5.30226 5.44065 5.50798 5.61517 5.68236 5.75478 5.83552 5.88122 5.96646 5.97738 6.01495 6.07715 6.11434 6.18556 6.23037 6.38819 6.46490 6.53017 6.77802 6.79167 6.90605 7.16268 7.45399 7.58774 7.75886 7.86662 7.93331 8.33228 9.12338 9.80592 10.22220 11.07221 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.005997 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.238607 B = 4667.841331 C = 5265.202808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.031 3.969 4 C 0.148 3.852 5 N -0.575 5.575 6 C -0.219 4.219 7 H 0.081 0.919 8 C 0.008 3.992 9 N -0.873 5.873 10 Si 0.853 3.147 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.285 1.285 14 C 0.150 3.850 15 C -0.041 4.041 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.101 4.101 19 Br -0.086 7.086 20 C -0.107 4.107 21 C -0.091 4.091 22 C -0.120 4.120 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 9.267 -1.967 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.048 4.048 4 C 0.020 3.980 5 N -0.293 5.293 6 C -0.346 4.346 7 H 0.099 0.901 8 C -0.188 4.188 9 N -0.520 5.520 10 Si 0.681 3.319 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.212 1.212 14 C 0.025 3.975 15 C -0.044 4.044 16 C -0.112 4.112 17 C -0.131 4.131 18 C -0.180 4.180 19 Br -0.001 7.001 20 C -0.127 4.127 21 C -0.093 4.093 22 C -0.177 4.177 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.578 9.047 -2.484 12.060 hybrid contribution -1.159 -0.625 -0.139 1.324 sum -8.737 8.422 -2.623 12.416 Atomic orbital electron populations 1.22618 0.83751 1.01669 0.98472 1.88160 1.17011 1.27078 1.94900 1.23612 0.97811 0.85097 0.98278 1.20976 0.90239 0.95006 0.91744 1.43991 1.73538 1.02873 1.08898 1.19041 1.40171 0.80754 0.94674 0.90093 1.24385 0.99216 0.97787 0.97456 1.70066 1.26853 1.41922 1.13169 0.87058 0.84186 0.83425 0.77188 1.21186 1.22032 1.21159 1.20771 0.95041 0.95866 0.85869 1.20998 0.97838 0.91178 0.94383 1.22123 0.96165 1.00492 0.92413 1.21135 0.95580 0.96162 1.00191 1.21489 0.96857 1.00109 0.99521 1.96539 1.44343 1.98343 1.60858 1.20683 0.98509 0.97922 0.95592 1.19758 0.95443 0.97038 0.97041 1.21049 1.01726 0.96706 0.98182 0.95077 0.90632 0.95525 0.95716 0.93176 0.92941 0.92204 0.93299 0.95265 0.84556 0.82505 0.86578 0.86641 0.91979 0.92450 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.32 9.50 -35.23 -0.33 -7.65 16 3 C 0.03 0.56 6.00 37.15 0.22 0.78 16 4 C 0.15 2.76 5.48 -4.04 -0.02 2.74 16 5 N -0.57 -12.92 2.52 -174.61 -0.44 -13.36 16 6 C -0.22 -5.62 8.46 -15.06 -0.13 -5.75 16 7 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 8 C 0.01 0.20 3.50 -17.43 -0.06 0.14 16 9 N -0.87 -22.48 8.55 55.49 0.47 -22.00 16 10 Si 0.85 21.25 29.42 -169.99 -5.00 16.24 16 11 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.15 3.23 4.89 -5.19 -0.03 3.21 16 15 C -0.04 -0.85 5.37 -104.62 -0.56 -1.41 16 16 C -0.09 -2.02 8.72 -39.59 -0.35 -2.36 16 17 C -0.11 -2.19 9.79 -39.56 -0.39 -2.58 16 18 C -0.10 -1.83 6.22 -39.52 -0.25 -2.08 16 19 Br -0.09 -1.32 33.70 -68.01 -2.29 -3.61 16 20 C -0.11 -1.87 9.48 -39.56 -0.37 -2.25 16 21 C -0.09 -1.65 5.13 -104.63 -0.54 -2.19 16 22 C -0.12 -1.78 7.71 36.00 0.28 -1.50 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.90 4.64 -51.93 -0.24 0.66 16 28 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 29 H 0.06 0.96 6.24 -51.93 -0.32 0.63 16 30 H 0.26 6.44 7.95 -40.82 -0.32 6.12 16 31 H 0.03 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.14 3.34 5.09 -51.93 -0.26 3.07 16 33 H 0.16 3.71 4.26 -52.48 -0.22 3.49 16 34 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.76 7.86 -51.93 -0.41 0.35 16 38 H 0.08 1.25 2.79 -51.93 -0.14 1.10 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -26.93 314.89 -8.78 -35.71 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.86 Total: 1.53 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.07 Total: -11.59 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.03 Total: -35.37 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.33 Total: -7.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.00 Total: 16.24 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -2.29 Total: -3.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.93 -8.78 -35.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds