Wall clock time and date at job start Tue Mar 31 2020 15:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00463 * 2 1 4 4 C 1.52988 * 109.47454 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47253 * 57.11459 * 4 3 2 6 6 C 1.36936 * 119.99825 * 277.33233 * 5 4 3 7 7 H 1.08002 * 119.99808 * 350.11006 * 6 5 4 8 8 C 1.38810 * 119.99961 * 170.11016 * 6 5 4 9 9 N 1.31614 * 120.00212 * 42.39311 * 8 6 5 10 10 Si 1.86802 * 119.99753 * 222.39420 * 8 6 5 11 11 H 1.48501 * 109.47471 * 59.99763 * 10 8 6 12 12 H 1.48509 * 109.46906 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47096 * 299.99684 * 10 8 6 14 14 C 1.46503 * 120.00079 * 97.32811 * 5 4 3 15 15 C 1.50702 * 109.47073 * 265.23208 * 14 5 4 16 16 C 1.38263 * 119.98677 * 268.08954 * 15 14 5 17 17 C 1.38197 * 120.00838 * 179.76715 * 16 15 14 18 18 C 1.38348 * 119.98959 * 0.50761 * 17 16 15 19 19 Br 1.89092 * 120.01127 * 179.76553 * 18 17 16 20 20 C 1.38308 * 119.97634 * 359.75022 * 18 17 16 21 21 C 1.38216 * 119.98922 * 88.36238 * 15 14 5 22 22 C 1.50697 * 119.99618 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.46926 * 59.99812 * 1 2 3 24 24 H 1.09001 * 109.47332 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47345 * 299.99611 * 1 2 3 26 26 H 1.09000 * 109.46401 * 60.00043 * 3 2 1 27 27 H 1.09005 * 109.46972 * 300.00528 * 3 2 1 28 28 H 1.09003 * 109.47544 * 297.11155 * 4 3 2 29 29 H 1.09003 * 109.47350 * 177.10987 * 4 3 2 30 30 H 0.97003 * 120.00325 * 182.03744 * 9 8 6 31 31 H 1.08997 * 109.46585 * 25.22910 * 14 5 4 32 32 H 1.08997 * 109.46876 * 145.23064 * 14 5 4 33 33 H 1.08007 * 119.99492 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.00694 * 180.25432 * 17 16 15 35 35 H 1.08002 * 120.00349 * 180.02562 * 20 18 17 36 36 H 1.08993 * 109.47715 * 99.54811 * 22 21 15 37 37 H 1.09004 * 109.46604 * 219.54401 * 22 21 15 38 38 H 1.09002 * 109.47001 * 339.53811 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9635 0.3981 -1.1590 6 6 3.9409 -0.9700 -1.1045 7 1 3.7629 -1.4701 -0.1639 8 6 4.1467 -1.7140 -2.2581 9 7 5.0880 -1.3631 -3.1084 10 14 3.0874 -3.2133 -2.6039 11 1 1.6627 -2.8036 -2.6906 12 1 3.5052 -3.8287 -3.8893 13 1 3.2529 -4.1999 -1.5064 14 6 4.4157 1.0754 -2.3768 15 6 3.2618 1.2052 -3.3374 16 6 3.0397 0.2252 -4.2871 17 6 1.9788 0.3414 -5.1651 18 6 1.1451 1.4436 -5.1004 19 35 -0.3027 1.6064 -6.3057 20 6 1.3709 2.4262 -4.1536 21 6 2.4292 2.3065 -3.2723 22 6 2.6758 3.3775 -2.2412 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6887 1.8462 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8603 0.6891 0.9156 29 1 3.9787 2.1790 -0.0512 30 1 5.2124 -1.8654 -3.9289 31 1 4.7906 2.0669 -2.1232 32 1 5.2118 0.4938 -2.8416 33 1 3.6935 -0.6328 -4.3407 34 1 1.8029 -0.4261 -5.9043 35 1 0.7201 3.2866 -4.1024 36 1 3.1993 4.2139 -2.7041 37 1 1.7225 3.7225 -1.8406 38 1 3.2837 2.9707 -1.4330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453604338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:55 Heat of formation + Delta-G solvation = 8.785808 kcal Electronic energy + Delta-G solvation = -21486.532269 eV Core-core repulsion = 18376.385238 eV Total energy + Delta-G solvation = -3110.147031 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61190 -38.72913 -37.15235 -34.41999 -33.52394 -32.60618 -31.02681 -30.05809 -27.91580 -27.27205 -26.67421 -24.82824 -22.97621 -22.17853 -21.15132 -18.87575 -17.43250 -17.11455 -16.99802 -16.40868 -16.20882 -15.85293 -15.64479 -15.22604 -14.92827 -14.45691 -14.34480 -14.04850 -13.76028 -13.36646 -13.30306 -13.05579 -12.78555 -12.64084 -12.44043 -12.25663 -12.10404 -11.98862 -11.91421 -11.51906 -11.45105 -11.40058 -11.22698 -10.31795 -10.26493 -9.59520 -9.21782 -8.78290 -7.83225 -4.98030 0.34143 0.53657 0.68178 1.41293 1.48688 1.59502 2.56569 2.81718 3.10784 3.25354 3.87509 3.95334 4.07615 4.30544 4.38992 4.40701 4.47599 4.51568 4.60103 4.64530 4.71462 4.74990 4.77519 4.86132 4.91739 4.94432 5.09063 5.13144 5.29580 5.39867 5.42821 5.65525 5.74795 5.85971 6.03336 6.15758 6.47885 6.61207 7.22700 7.97064 8.33672 9.08737 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.005997 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.238607 B = 4667.841331 C = 5265.202808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.034 3.966 4 C 0.142 3.858 5 N -0.584 5.584 6 C -0.214 4.214 7 H 0.064 0.936 8 C -0.014 4.014 9 N -0.878 5.878 10 Si 0.876 3.124 11 H -0.304 1.304 12 H -0.296 1.296 13 H -0.290 1.290 14 C 0.155 3.845 15 C -0.059 4.059 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.105 4.105 19 Br -0.057 7.057 20 C -0.105 4.105 21 C -0.086 4.086 22 C -0.118 4.118 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.251 0.749 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 11.969 -1.398 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C -0.044 4.044 4 C 0.016 3.984 5 N -0.303 5.303 6 C -0.343 4.343 7 H 0.082 0.918 8 C -0.210 4.210 9 N -0.525 5.525 10 Si 0.707 3.293 11 H -0.233 1.233 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.030 3.970 15 C -0.062 4.062 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.185 4.185 19 Br 0.028 6.972 20 C -0.124 4.124 21 C -0.088 4.088 22 C -0.174 4.174 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.004 11.768 -1.909 14.940 hybrid contribution -0.797 -1.401 -0.324 1.644 sum -9.801 10.368 -2.233 14.441 Atomic orbital electron populations 1.22719 0.82027 1.02105 0.99757 1.88098 1.19112 1.28978 1.95222 1.23580 0.96669 0.84377 0.99804 1.21211 0.91308 0.95959 0.89900 1.44082 1.73824 1.02014 1.10402 1.18993 1.38931 0.82651 0.93758 0.91834 1.24530 1.00131 0.98340 0.97987 1.70153 1.27314 1.41966 1.13106 0.86651 0.83026 0.82906 0.76708 1.23266 1.22286 1.21638 1.20562 0.94646 0.96197 0.85626 1.20941 0.98451 0.92311 0.94499 1.21995 0.97080 1.00544 0.94210 1.21177 0.95827 0.97264 1.00302 1.21698 0.97189 0.99523 1.00040 1.96555 1.42522 1.98216 1.59883 1.21034 0.98422 0.98345 0.94640 1.20089 0.94491 0.96724 0.97503 1.21101 1.03144 0.96097 0.97080 0.95305 0.90829 0.92503 0.92456 0.93073 0.93662 0.88984 0.93758 0.92782 0.87786 0.85031 0.86367 0.83739 0.89719 0.90243 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -15.81 9.50 -148.98 -1.42 -17.23 16 3 C 0.03 1.13 6.00 71.98 0.43 1.56 16 4 C 0.14 5.01 5.48 86.37 0.47 5.48 16 5 N -0.58 -25.93 2.52 -706.34 -1.78 -27.71 16 6 C -0.21 -11.16 8.46 84.03 0.71 -10.45 16 7 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 8 C -0.01 -0.77 3.50 84.86 0.30 -0.47 16 9 N -0.88 -46.64 8.55 21.65 0.19 -46.45 16 10 Si 0.88 44.79 29.42 68.60 2.02 46.81 16 11 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 12 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 13 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 14 C 0.16 6.59 4.89 85.63 0.42 7.01 16 15 C -0.06 -2.41 5.37 -19.86 -0.11 -2.52 16 16 C -0.12 -5.26 8.72 22.27 0.19 -5.07 16 17 C -0.13 -4.99 9.79 22.29 0.22 -4.77 16 18 C -0.11 -3.64 6.22 22.31 0.14 -3.51 16 19 Br -0.06 -1.62 33.70 -20.37 -0.69 -2.31 16 20 C -0.10 -3.34 9.48 22.29 0.21 -3.13 16 21 C -0.09 -2.91 5.13 -19.87 -0.10 -3.01 16 22 C -0.12 -2.97 7.71 71.23 0.55 -2.42 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.67 4.64 -2.38 -0.01 1.66 16 28 H 0.05 1.65 8.10 -2.39 -0.02 1.63 16 29 H 0.09 2.62 6.24 -2.39 -0.01 2.60 16 30 H 0.25 13.20 7.95 -92.71 -0.74 12.46 16 31 H 0.05 1.97 6.32 -2.39 -0.02 1.96 16 32 H 0.11 5.19 5.09 -2.39 -0.01 5.17 16 33 H 0.13 6.51 4.26 -2.91 -0.01 6.50 16 34 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.68 7.86 -2.38 -0.02 1.66 16 38 H 0.08 2.02 2.79 -2.39 -0.01 2.01 16 Total: -1.00 -59.07 314.89 4.11 -54.95 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.11 Total: 11.02 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 4.68 Total: -19.08 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -1.59 Total: -74.16 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.42 Total: -17.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.02 Total: 46.81 kcal Atomic # 35 Polarization: -1.62 SS G_CDS: -0.69 Total: -2.31 kcal Total: -59.07 4.11 -54.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.741 kcal (2) G-P(sol) polarization free energy of solvation -59.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds