Wall clock time and date at job start Tue Mar 31 2020 15:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99711 * 2 1 4 4 C 1.53000 * 109.46922 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47477 * 65.00090 * 4 3 2 6 6 C 1.36929 * 120.00316 * 97.17236 * 5 4 3 7 7 H 1.08006 * 120.00072 * 165.23621 * 6 5 4 8 8 C 1.38811 * 119.99968 * 344.96616 * 6 5 4 9 9 N 1.31614 * 119.99992 * 341.59500 * 8 6 5 10 10 Si 1.86800 * 120.00182 * 161.59956 * 8 6 5 11 11 H 1.48496 * 109.47348 * 89.99566 * 10 8 6 12 12 H 1.48502 * 109.47118 * 210.00111 * 10 8 6 13 13 H 1.48509 * 109.46818 * 329.99903 * 10 8 6 14 14 C 1.46501 * 119.99519 * 277.17417 * 5 4 3 15 15 C 1.50706 * 109.47300 * 277.62217 * 14 5 4 16 16 C 1.38262 * 119.99112 * 98.50516 * 15 14 5 17 17 C 1.38216 * 120.01717 * 179.97438 * 16 15 14 18 18 C 1.38244 * 120.01050 * 359.97438 * 17 16 15 19 19 C 1.38300 * 119.98907 * 359.97438 * 18 17 16 20 20 Br 1.89102 * 120.01074 * 179.97438 * 19 18 17 21 21 C 1.38197 * 119.99493 * 278.23616 * 15 14 5 22 22 C 1.50705 * 120.00292 * 359.97438 * 21 15 14 23 23 H 1.09004 * 109.46976 * 60.00738 * 1 2 3 24 24 H 1.09007 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47630 * 300.00040 * 1 2 3 26 26 H 1.08997 * 109.47507 * 59.99480 * 3 2 1 27 27 H 1.09000 * 109.47137 * 299.99831 * 3 2 1 28 28 H 1.09001 * 109.47214 * 304.99698 * 4 3 2 29 29 H 1.09006 * 109.46977 * 185.00098 * 4 3 2 30 30 H 0.97003 * 119.99747 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47444 * 37.62700 * 14 5 4 32 32 H 1.09002 * 109.46751 * 157.62668 * 14 5 4 33 33 H 1.07996 * 119.99371 * 359.97438 * 16 15 14 34 34 H 1.08003 * 119.99590 * 180.02562 * 17 16 15 35 35 H 1.07998 * 120.00332 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.47038 * 88.60271 * 22 21 15 37 37 H 1.09008 * 109.46599 * 208.60067 * 22 21 15 38 38 H 1.08997 * 109.47361 * 328.59734 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 6 4.4081 1.3467 -2.2883 7 1 4.9511 0.9031 -3.1099 8 6 4.1428 2.7092 -2.2869 9 7 3.1949 3.1942 -1.5133 10 14 5.1309 3.8544 -3.3831 11 1 4.4607 3.9773 -4.7025 12 1 5.2209 5.1932 -2.7468 13 1 6.4969 3.3029 -3.5712 14 6 3.9564 -0.8939 -1.3923 15 6 5.1983 -1.4766 -0.7683 16 6 5.1492 -1.9992 0.5108 17 6 6.2877 -2.5342 1.0834 18 6 7.4761 -2.5474 0.3771 19 6 7.5254 -2.0256 -0.9027 20 35 9.1508 -2.0426 -1.8691 21 6 6.3847 -1.4934 -1.4768 22 6 6.4365 -0.9296 -2.8735 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8507 0.5687 0.8427 29 1 3.9784 2.1767 0.0902 30 1 3.0097 4.1464 -1.5121 31 1 3.0755 -1.2954 -0.8913 32 1 3.9240 -1.1559 -2.4498 33 1 4.2209 -1.9895 1.0627 34 1 6.2488 -2.9427 2.0824 35 1 8.3657 -2.9650 0.8248 36 1 6.6655 0.1350 -2.8273 37 1 7.2103 -1.4433 -3.4441 38 1 5.4713 -1.0730 -3.3592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459540628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:50 Heat of formation + Delta-G solvation = -3.973230 kcal Electronic energy + Delta-G solvation = -20788.378741 eV Core-core repulsion = 17677.678436 eV Total energy + Delta-G solvation = -3110.700304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.55233 -38.72820 -37.04059 -34.10878 -33.89421 -32.39875 -30.64114 -30.14339 -28.15736 -27.08790 -26.73925 -24.70155 -22.69136 -22.47972 -21.24407 -18.67980 -17.37411 -17.09865 -16.73330 -16.57436 -16.25149 -15.88447 -15.52104 -15.36571 -14.86825 -14.60577 -14.13389 -13.98664 -13.36395 -13.26706 -13.16289 -12.98403 -12.84601 -12.64976 -12.46081 -12.39692 -12.09931 -11.91739 -11.77211 -11.64584 -11.55297 -11.36334 -10.97865 -10.50086 -10.18396 -9.51579 -9.44630 -8.68746 -7.74149 -5.10244 0.28636 0.48272 0.74051 1.48132 1.52689 1.58950 2.55438 2.79762 3.27408 3.38303 3.84504 3.95668 4.00799 4.19904 4.35819 4.48792 4.57519 4.63227 4.66849 4.80266 4.81043 4.82100 4.86189 4.90533 4.98974 4.99660 5.10505 5.24971 5.37706 5.42886 5.55708 5.63028 5.68143 5.84834 5.91012 6.05159 6.40211 6.64269 7.27351 7.95929 8.40644 9.28193 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.013282 B = 0.005312 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.608756 B = 5269.672322 C = 6948.477262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.412 6.412 3 C 0.070 3.930 4 C 0.188 3.812 5 N -0.590 5.590 6 C -0.240 4.240 7 H 0.086 0.914 8 C -0.055 4.055 9 N -0.929 5.929 10 Si 0.948 3.052 11 H -0.292 1.292 12 H -0.299 1.299 13 H -0.276 1.276 14 C 0.186 3.814 15 C -0.095 4.095 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.101 4.101 19 C -0.108 4.108 20 Br -0.055 7.055 21 C -0.054 4.054 22 C -0.115 4.115 23 H 0.025 0.975 24 H 0.097 0.903 25 H 0.040 0.960 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -12.279 3.787 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.332 6.332 3 C -0.008 4.008 4 C 0.062 3.938 5 N -0.309 5.309 6 C -0.369 4.369 7 H 0.103 0.897 8 C -0.249 4.249 9 N -0.579 5.579 10 Si 0.779 3.221 11 H -0.219 1.219 12 H -0.226 1.226 13 H -0.202 1.202 14 C 0.060 3.940 15 C -0.099 4.099 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.121 4.121 19 C -0.187 4.187 20 Br 0.030 6.970 21 C -0.057 4.057 22 C -0.171 4.171 23 H 0.043 0.957 24 H 0.115 0.885 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.916 -12.277 3.403 14.496 hybrid contribution -0.364 1.466 -0.385 1.559 sum 6.551 -10.812 3.017 12.997 Atomic orbital electron populations 1.22722 0.81598 1.02739 0.99298 1.87772 1.19813 1.30229 1.95380 1.23365 0.96262 0.82168 0.98969 1.20554 0.90685 0.96814 0.85720 1.44054 1.74747 1.00148 1.12000 1.19852 1.26458 0.89941 1.00693 0.89658 1.25307 0.99266 0.98916 1.01385 1.70162 1.31258 1.11877 1.44566 0.85541 0.79402 0.78829 0.78330 1.21936 1.22601 1.20189 1.19826 0.92409 0.83553 0.98208 1.20883 0.96645 0.96927 0.95445 1.21371 0.99511 0.96876 0.94279 1.21376 0.91574 1.00013 1.00904 1.21249 0.99588 0.99065 0.92178 1.21836 0.91465 1.07962 0.97415 1.96566 1.27338 1.98142 1.74917 1.19735 0.91967 0.96691 0.97277 1.21042 1.02757 1.00923 0.92419 0.95654 0.88468 0.94116 0.96447 0.92151 0.96160 0.91311 0.94631 0.92046 0.92813 0.85205 0.82574 0.83399 0.91507 0.90671 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.28 16 2 O -0.41 -16.63 8.83 -148.98 -1.32 -17.94 16 3 C 0.07 3.16 5.66 71.98 0.41 3.57 16 4 C 0.19 8.87 5.33 86.38 0.46 9.33 16 5 N -0.59 -27.79 2.52 -706.33 -1.78 -29.57 16 6 C -0.24 -12.22 8.87 84.03 0.75 -11.47 16 7 H 0.09 4.19 5.02 -2.91 -0.01 4.18 16 8 C -0.06 -2.92 4.98 84.86 0.42 -2.50 16 9 N -0.93 -50.76 8.39 21.65 0.18 -50.58 16 10 Si 0.95 43.99 29.59 68.60 2.03 46.02 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 12 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.19 7.52 5.21 85.63 0.45 7.96 16 15 C -0.10 -3.44 5.44 -19.87 -0.11 -3.55 16 16 C -0.10 -3.14 9.66 22.27 0.22 -2.92 16 17 C -0.12 -3.08 10.05 22.27 0.22 -2.85 16 18 C -0.10 -2.67 9.79 22.29 0.22 -2.45 16 19 C -0.11 -3.32 6.22 22.31 0.14 -3.18 16 20 Br -0.06 -1.49 31.76 -20.37 -0.65 -2.14 16 21 C -0.05 -1.90 5.88 -19.85 -0.12 -2.02 16 22 C -0.12 -4.02 7.67 71.24 0.55 -3.48 16 23 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.15 6.25 -2.39 -0.01 3.13 16 28 H 0.02 0.90 8.11 -2.39 -0.02 0.88 16 29 H 0.07 3.64 6.05 -2.38 -0.01 3.63 16 30 H 0.24 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.06 2.48 6.27 -2.39 -0.01 2.46 16 32 H 0.05 2.18 6.17 -2.39 -0.01 2.17 16 33 H 0.13 3.79 8.05 -2.91 -0.02 3.77 16 34 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.07 2.64 6.81 -2.39 -0.02 2.63 16 37 H 0.07 2.31 6.59 -2.38 -0.02 2.30 16 38 H 0.07 2.45 5.59 -2.39 -0.01 2.43 16 Total: -1.00 -56.86 320.07 4.38 -52.48 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.06 Total: 13.00 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.85 Total: -11.27 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.60 Total: -80.15 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.32 Total: -17.94 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -0.65 Total: -2.14 kcal Total: -56.86 4.38 -52.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459540628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.508 kcal (2) G-P(sol) polarization free energy of solvation -56.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds