Wall clock time and date at job start Tue Mar 31 2020 15:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48500 * 109.47188 * 270.00525 * 3 2 1 5 5 H 1.48496 * 109.46836 * 30.00615 * 3 2 1 6 6 H 1.48500 * 109.46742 * 150.00159 * 3 2 1 7 7 C 1.37881 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99845 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47018 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47257 * 178.01349 * 10 9 7 12 12 C 1.46900 * 111.00321 * 299.67417 * 11 10 9 13 13 C 1.53004 * 109.47166 * 290.08929 * 12 11 10 14 14 O 1.42902 * 109.47109 * 67.08406 * 13 12 11 15 15 C 1.46907 * 110.99935 * 175.71814 * 11 10 9 16 16 C 1.50697 * 109.46847 * 190.00224 * 15 11 10 17 17 C 1.38270 * 119.99671 * 270.27380 * 16 15 11 18 18 C 1.38217 * 120.01823 * 180.23364 * 17 16 15 19 19 C 1.38230 * 120.01342 * 359.49495 * 18 17 16 20 20 C 1.38310 * 119.99182 * 0.25202 * 19 18 17 21 21 Br 1.89091 * 120.01249 * 179.97438 * 20 19 18 22 22 C 1.38192 * 119.99636 * 90.00096 * 16 15 11 23 23 H 0.96995 * 120.00153 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47302 * 60.00353 * 9 7 2 25 25 H 1.08997 * 109.47035 * 299.99747 * 9 7 2 26 26 H 1.09009 * 109.47039 * 58.01598 * 10 9 7 27 27 H 1.09001 * 109.47549 * 298.02252 * 10 9 7 28 28 H 1.09005 * 109.47076 * 50.08385 * 12 11 10 29 29 H 1.08994 * 109.47188 * 170.08532 * 12 11 10 30 30 H 1.09000 * 109.47018 * 187.08823 * 13 12 11 31 31 H 1.09000 * 109.46684 * 307.09002 * 13 12 11 32 32 H 0.96700 * 113.99762 * 179.97438 * 14 13 12 33 33 H 1.08998 * 109.46638 * 70.00557 * 15 11 10 34 34 H 1.08991 * 109.47021 * 310.00438 * 15 11 10 35 35 H 1.08000 * 119.98542 * 359.97438 * 17 16 15 36 36 H 1.08008 * 119.99036 * 179.77129 * 18 17 16 37 37 H 1.07999 * 120.00519 * 180.23460 * 19 18 17 38 38 H 1.07997 * 120.00769 * 0.04334 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5115 -4.9337 0.0462 12 6 0.6929 -5.0237 1.2627 13 6 1.6052 -5.1810 2.4808 14 8 2.3578 -3.9810 2.6704 15 6 2.4299 -6.0757 -0.0560 16 6 1.6369 -7.3423 -0.2503 17 6 1.2151 -8.0692 0.8478 18 6 0.4919 -9.2335 0.6699 19 6 0.1808 -9.6663 -0.6055 20 6 0.5979 -8.9368 -1.7040 21 35 0.1733 -9.5287 -3.4490 22 6 1.3263 -7.7742 -1.5257 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8958 -3.5849 0.8694 27 1 2.8477 -3.6242 -0.9094 28 1 0.0986 -4.1160 1.3687 29 1 0.0299 -5.8858 1.1915 30 1 0.9992 -5.3736 3.3661 31 1 2.2872 -6.0157 2.3186 32 1 2.9588 -4.0093 3.4274 33 1 3.0179 -6.1519 0.8586 34 1 3.0969 -5.9306 -0.9057 35 1 1.4546 -7.7292 1.8445 36 1 0.1658 -9.8029 1.5279 37 1 -0.3876 -10.5741 -0.7441 38 1 1.6525 -7.2045 -2.3833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488157410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:13 Heat of formation + Delta-G solvation = -36.658375 kcal Electronic energy + Delta-G solvation = -19993.496321 eV Core-core repulsion = 16881.378682 eV Total energy + Delta-G solvation = -3112.117638 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81017 -39.17470 -36.68563 -35.22839 -33.51478 -32.75094 -31.53598 -30.11529 -29.68840 -27.13634 -25.39978 -23.89475 -23.34630 -21.99846 -20.65830 -18.64850 -18.44177 -17.68769 -17.30041 -16.56071 -16.27801 -16.05696 -16.01144 -15.13522 -14.66012 -14.39473 -14.30224 -14.22399 -13.85453 -13.82739 -13.30780 -12.96979 -12.84380 -12.66940 -12.46194 -12.26015 -12.07808 -11.99237 -11.85694 -11.73772 -11.29210 -11.19208 -11.14907 -10.69832 -10.41411 -9.84125 -9.63391 -8.93199 -8.14405 -6.23654 0.13995 0.33961 0.66713 1.40374 1.42549 1.53337 2.43224 2.60298 3.18939 3.28443 3.50522 3.73520 3.89747 4.03102 4.15759 4.24543 4.34037 4.36939 4.48037 4.52738 4.58563 4.69664 4.81606 4.88902 4.99420 5.00653 5.13444 5.26018 5.32909 5.38998 5.53786 5.55775 5.80858 5.86153 5.88771 6.17271 6.38556 6.43988 6.93407 7.01400 7.43796 8.98119 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.003042 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.576725 B = 9202.310512 C =10297.385487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.045 3.955 10 C 0.072 3.928 11 N -0.541 5.541 12 C 0.047 3.953 13 C 0.040 3.960 14 O -0.577 6.577 15 C 0.088 3.912 16 C -0.072 4.072 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.101 4.101 21 Br -0.058 7.058 22 C -0.088 4.088 23 H 0.261 0.739 24 H -0.025 1.025 25 H -0.002 1.002 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.383 0.617 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.149 0.851 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -25.006 1.887 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.008 3.992 10 C -0.054 4.054 11 N -0.264 5.264 12 C -0.081 4.081 13 C -0.039 4.039 14 O -0.384 6.384 15 C -0.039 4.039 16 C -0.073 4.073 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.181 4.181 21 Br 0.028 6.972 22 C -0.108 4.108 23 H 0.070 0.930 24 H -0.007 1.007 25 H 0.016 0.984 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.232 0.768 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.167 0.833 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.784 -24.941 0.281 25.006 hybrid contribution 0.907 1.209 1.156 1.903 sum 2.691 -23.732 1.438 23.928 Atomic orbital electron populations 1.70122 1.07830 1.27462 1.52207 1.25942 0.95706 1.03198 0.94995 0.85466 0.78703 0.78572 0.78385 1.19920 1.20803 1.18666 1.21588 0.93282 0.92346 1.49756 0.92554 1.18840 0.94099 0.92196 0.94095 1.22163 0.95944 0.87545 0.99760 1.62188 1.24671 1.01998 1.37582 1.22334 0.96189 1.02294 0.87253 1.23025 0.94874 0.87489 0.98475 1.86846 1.59551 1.38591 1.53455 1.21113 0.93366 0.87501 1.01945 1.19808 0.98847 0.95648 0.93042 1.21493 0.97032 0.94820 0.98878 1.21469 0.97623 0.96226 0.97368 1.21377 0.99061 0.99957 0.91349 1.21901 1.05212 0.99296 0.91656 1.96691 1.93336 1.89085 1.18122 1.21037 0.97299 0.94571 0.97933 0.93015 1.00654 0.98393 0.91922 0.93744 0.92832 0.88528 0.91875 0.91314 0.76795 0.92076 0.90518 0.83976 0.81999 0.83348 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.29 21.45 0.28 -58.92 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.53 -31.55 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.52 4.83 29.85 0.14 2.66 16 10 C 0.07 3.19 4.46 86.30 0.39 3.57 16 11 N -0.54 -19.52 4.75 -900.79 -4.28 -23.80 16 12 C 0.05 1.57 5.18 86.30 0.45 2.01 16 13 C 0.04 1.03 6.25 71.98 0.45 1.48 16 14 O -0.58 -18.23 10.53 -148.98 -1.57 -19.80 16 15 C 0.09 2.41 4.80 85.55 0.41 2.82 16 16 C -0.07 -1.73 4.89 -19.87 -0.10 -1.82 16 17 C -0.10 -1.93 8.02 22.27 0.18 -1.75 16 18 C -0.11 -1.68 10.04 22.26 0.22 -1.46 16 19 C -0.10 -1.74 9.79 22.28 0.22 -1.52 16 20 C -0.10 -2.27 6.22 22.31 0.14 -2.13 16 21 Br -0.06 -1.23 33.70 -20.37 -0.69 -1.91 16 22 C -0.09 -2.22 9.44 22.29 0.21 -2.01 16 23 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 24 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 25 H 0.00 -0.13 6.11 -2.39 -0.01 -0.14 16 26 H 0.06 2.72 5.29 -2.38 -0.01 2.70 16 27 H 0.04 1.96 8.05 -2.39 -0.02 1.94 16 28 H 0.05 2.26 5.81 -2.38 -0.01 2.25 16 29 H 0.10 2.75 6.55 -2.39 -0.02 2.73 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.39 4.41 -2.39 -0.01 1.38 16 32 H 0.38 8.06 9.12 -74.06 -0.68 7.39 16 33 H 0.06 1.49 5.66 -2.39 -0.01 1.47 16 34 H 0.08 2.14 7.95 -2.39 -0.02 2.12 16 35 H 0.14 2.10 6.12 -2.91 -0.02 2.08 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.46 323.19 -0.41 -72.87 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.41 Total: 12.86 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.41 Total: -29.07 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.99 Total: -82.71 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.57 Total: -19.80 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 35 Polarization: -1.23 SS G_CDS: -0.69 Total: -1.91 kcal Total: -72.46 -0.41 -72.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488157410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.207 kcal (2) G-P(sol) polarization free energy of solvation -72.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds