Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47249 * 307.94850 * 3 2 1 5 5 N 1.46493 * 109.47460 * 67.95493 * 3 2 1 6 6 S 1.65601 * 119.99926 * 264.99724 * 5 3 2 7 7 O 1.42101 * 104.27610 * 181.07141 * 6 5 3 8 8 O 1.42096 * 104.27886 * 308.92620 * 6 5 3 9 9 C 1.81393 * 104.44955 * 65.00010 * 6 5 3 10 10 C 1.53005 * 109.47384 * 179.97438 * 9 6 5 11 11 C 1.50694 * 109.47340 * 179.97438 * 10 9 6 12 12 H 1.08004 * 119.99918 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00007 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99956 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47146 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47275 * 120.00250 * 15 13 11 18 18 H 1.48505 * 109.47337 * 240.00259 * 15 13 11 19 19 C 1.50706 * 109.46675 * 187.95547 * 3 2 1 20 20 C 1.38244 * 119.98773 * 99.99820 * 19 3 2 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 3 22 22 C 1.38351 * 119.98541 * 0.25893 * 21 20 19 23 23 Cl 1.73604 * 120.00786 * 179.69323 * 22 21 20 24 24 C 1.38349 * 119.97465 * 359.42086 * 22 21 20 25 25 C 1.38212 * 119.98525 * 0.59771 * 24 22 21 26 26 H 4.18739 * 15.03887 * 359.97438 * 4 2 1 27 27 H 0.97010 * 120.00157 * 84.99633 * 5 3 2 28 28 H 1.08998 * 109.47301 * 299.99993 * 9 6 5 29 29 H 1.09002 * 109.47577 * 59.99902 * 9 6 5 30 30 H 1.08998 * 109.47043 * 300.00331 * 10 9 6 31 31 H 1.08997 * 109.46545 * 59.99987 * 10 9 6 32 32 H 0.96999 * 119.99996 * 179.97438 * 14 13 11 33 33 H 1.07999 * 119.99331 * 0.02562 * 20 19 3 34 34 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 35 35 H 1.08008 * 120.00633 * 180.29755 * 24 22 21 36 36 H 1.08001 * 119.99190 * 179.72131 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.6311 0.8103 5 7 3.1346 -0.5175 -1.2801 6 16 3.5293 -2.1189 -1.4288 7 8 3.9778 -2.2461 -2.7711 8 8 4.4047 -2.3669 -0.3373 9 6 1.9583 -2.9957 -1.1968 10 6 2.1934 -4.5030 -1.3135 11 6 0.8884 -5.2314 -1.1201 12 1 -0.0181 -4.6749 -0.9332 13 6 0.8518 -6.6083 -1.1819 14 7 1.9557 -7.2860 -1.4090 15 14 -0.7657 -7.5112 -0.9415 16 1 -1.8514 -6.5267 -0.7020 17 1 -1.0762 -8.3034 -2.1587 18 1 -0.6557 -8.4215 0.2267 19 6 3.1476 1.4081 0.1967 20 6 3.5737 1.8217 1.4451 21 6 4.0333 3.1126 1.6261 22 6 4.0619 3.9924 0.5588 23 17 4.6316 5.6163 0.7873 24 6 3.6416 3.5759 -0.6918 25 6 3.1818 2.2850 -0.8715 26 1 -1.0500 0.0000 0.0008 27 1 3.2270 0.0774 -2.0408 28 1 1.5561 -2.7656 -0.2102 29 1 1.2489 -2.6788 -1.9613 30 1 2.5955 -4.7328 -2.3002 31 1 2.9029 -4.8202 -0.5492 32 1 1.9299 -8.2547 -1.4521 33 1 3.5474 1.1360 2.2791 34 1 4.3658 3.4356 2.6016 35 1 3.6682 4.2610 -1.5264 36 1 2.8494 1.9611 -1.8467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491421142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -6.151402 kcal Electronic energy + Delta-G solvation = -22262.061650 eV Core-core repulsion = 18672.614356 eV Total energy + Delta-G solvation = -3589.447294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00569 -37.22099 -36.67382 -36.05088 -35.51942 -33.92786 -32.35108 -31.49030 -31.18625 -30.89233 -26.36913 -25.62710 -23.28344 -22.10873 -21.66350 -19.16540 -18.69229 -17.99712 -17.41903 -16.60173 -16.33504 -15.65757 -15.59451 -15.29146 -14.88178 -14.58124 -14.49779 -13.87601 -13.86780 -13.58984 -13.41961 -12.56440 -12.35290 -12.05591 -11.88710 -11.78031 -11.68139 -11.61834 -11.58480 -11.16722 -11.11394 -11.00038 -10.65116 -10.47835 -10.44596 -10.37719 -10.07904 -9.66400 -9.40514 -9.13378 -8.99053 -8.52666 -6.14518 -4.19888 0.59872 0.78262 0.93156 1.77406 2.45408 2.65973 3.20766 3.23626 3.26608 3.31025 3.34172 4.07006 4.25482 4.35480 4.38224 4.40323 4.51798 4.65051 4.87532 4.95716 5.02218 5.20891 5.28106 5.43567 5.58697 5.62421 5.75021 5.77508 5.83181 5.85150 6.15860 6.38178 6.45757 6.86918 7.27595 7.33291 7.45286 7.78823 8.15356 8.83689 9.44929 10.96595 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002643 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.794931 B =10590.283727 C =11095.702713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.218 4.218 3 C 0.305 3.695 4 H 0.125 0.875 5 N -1.117 6.117 6 S 2.587 3.413 7 O -0.962 6.962 8 O -0.962 6.962 9 C -0.584 4.584 10 C 0.028 3.972 11 C -0.518 4.518 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.075 4.075 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.033 4.033 23 Cl -0.073 7.073 24 C -0.108 4.108 25 C -0.091 4.091 26 H 0.221 0.779 27 H 0.414 0.586 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 23.496 4.558 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.220 4.220 3 C 0.198 3.802 4 H 0.143 0.857 5 N -0.871 5.871 6 S 2.685 3.315 7 O -0.952 6.952 8 O -0.952 6.952 9 C -0.718 4.718 10 C -0.011 4.011 11 C -0.558 4.558 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.077 4.077 20 C -0.109 4.109 21 C -0.126 4.126 22 C -0.060 4.060 23 Cl -0.044 7.044 24 C -0.127 4.127 25 C -0.110 4.110 26 H 0.238 0.762 27 H 0.249 0.751 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.849 23.030 4.524 23.543 hybrid contribution -1.689 -0.105 -0.126 1.697 sum 0.160 22.925 4.398 23.343 Atomic orbital electron populations 1.25021 0.95841 0.98619 0.97873 1.23181 0.94230 1.02133 1.02415 1.16257 0.83392 0.93091 0.87485 0.85707 1.56096 1.83430 1.29570 1.18050 1.05815 0.78397 0.72917 0.74334 1.93566 1.80555 1.84521 1.36563 1.93550 1.62467 1.83569 1.55631 1.30439 1.18472 1.12460 1.10454 1.18979 0.99651 0.83627 0.98848 1.21020 0.93432 0.91243 1.50065 0.91989 1.25069 0.96795 0.97702 0.94958 1.69960 1.26865 1.07426 1.48580 0.86419 0.83278 0.79711 0.77902 1.19662 1.20807 1.20788 1.19781 0.99084 0.94593 0.94227 1.21052 0.97236 0.95657 0.96910 1.21047 1.00193 0.92896 0.98495 1.20989 1.02629 0.86774 0.95593 1.98376 1.87649 1.21014 1.97328 1.21030 0.99261 0.96517 0.95909 1.20919 0.98451 0.92410 0.99171 0.76232 0.75113 0.86219 0.85995 0.94818 0.94783 0.92569 0.84214 0.84520 0.84640 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.22 -2.51 12.07 -37.12 -0.45 -2.96 16 3 C 0.31 3.51 2.85 -71.87 -0.20 3.31 16 4 H 0.13 1.41 7.34 -51.93 -0.38 1.03 16 5 N -1.12 -14.09 5.27 -8.32 -0.04 -14.13 16 6 S 2.59 44.94 5.44 -107.50 -0.58 44.36 16 7 O -0.96 -19.46 18.08 -57.54 -1.04 -20.50 16 8 O -0.96 -19.16 17.39 -57.54 -1.00 -20.16 16 9 C -0.58 -10.97 5.63 37.16 0.21 -10.76 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.08 -0.76 4.92 -104.62 -0.51 -1.27 16 20 C -0.09 -0.81 9.67 -39.59 -0.38 -1.19 16 21 C -0.11 -0.91 9.83 -39.55 -0.39 -1.30 16 22 C -0.03 -0.30 6.32 -39.50 -0.25 -0.54 16 23 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 24 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 25 C -0.09 -0.83 9.14 -39.59 -0.36 -1.19 16 26 H 0.22 1.60 7.80 -54.09 -0.42 1.18 16 27 H 0.41 4.31 7.04 -34.47 -0.24 4.06 16 28 H 0.12 2.04 7.73 -51.92 -0.40 1.64 16 29 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.14 1.01 8.04 -52.49 -0.42 0.58 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.13 1.02 6.82 -52.49 -0.36 0.66 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -34.73 349.70 -9.78 -44.51 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.88 Total: 2.91 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.71 Total: -30.62 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.69 Total: -39.61 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.04 Total: -40.66 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 44.94 SS G_CDS: -0.58 Total: 44.36 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.73 -9.78 -44.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491421142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.359 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds