Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46926 * 106.29694 * 3 2 1 5 5 N 1.46499 * 109.47205 * 346.29975 * 3 2 1 6 6 S 1.65601 * 120.00334 * 94.99886 * 5 3 2 7 7 O 1.42096 * 104.27550 * 308.93049 * 6 5 3 8 8 O 1.42097 * 104.27967 * 181.06892 * 6 5 3 9 9 C 1.81399 * 104.44938 * 64.99936 * 6 5 3 10 10 C 1.53002 * 109.47162 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.46925 * 179.97438 * 10 9 6 12 12 H 1.07999 * 120.00196 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.50695 * 109.47297 * 226.29320 * 3 2 1 20 20 C 1.38245 * 119.98269 * 79.73022 * 19 3 2 21 21 C 1.38222 * 120.01038 * 179.72944 * 20 19 3 22 22 C 1.38349 * 119.98631 * 0.54245 * 21 20 19 23 23 Cl 1.73601 * 120.01264 * 179.70575 * 22 21 20 24 24 C 1.38351 * 119.97352 * 359.73066 * 22 21 20 25 25 C 1.38213 * 119.98822 * 359.97438 * 24 22 21 26 26 H 4.18738 * 15.03853 * 0.02562 * 4 2 1 27 27 H 0.97004 * 119.99597 * 274.99304 * 5 3 2 28 28 H 1.09004 * 109.47089 * 300.00001 * 9 6 5 29 29 H 1.09004 * 109.47568 * 60.00012 * 9 6 5 30 30 H 1.09000 * 109.46497 * 299.99702 * 10 9 6 31 31 H 1.08996 * 109.46876 * 60.00092 * 10 9 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99516 * 0.02562 * 20 19 3 34 34 H 1.08000 * 120.00193 * 180.27057 * 21 20 19 35 35 H 1.08002 * 120.00555 * 179.97438 * 24 22 21 36 36 H 1.08001 * 119.99512 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.2892 -0.9864 5 7 3.1349 -1.3410 0.3271 6 16 3.5292 -2.3972 -0.8858 7 8 2.3922 -2.3925 -1.7380 8 8 3.9299 -3.5786 -0.2054 9 6 4.9480 -1.6271 -1.7132 10 6 5.4105 -2.5182 -2.8678 11 6 6.5888 -1.8780 -3.5555 12 1 6.9694 -0.9302 -3.2045 13 6 7.1808 -2.5024 -4.6329 14 7 6.7170 -3.6563 -5.0606 15 14 8.6418 -1.7092 -5.4849 16 1 9.8992 -2.1703 -4.8435 17 1 8.6474 -2.0946 -6.9191 18 1 8.5400 -0.2322 -5.3697 19 6 3.1479 0.9826 1.0270 20 6 3.1771 0.6301 2.3635 21 6 3.6426 1.5283 3.3053 22 6 4.0688 2.7842 2.9117 23 17 4.6464 3.9156 4.0950 24 6 4.0340 3.1384 1.5748 25 6 3.5741 2.2373 0.6331 26 1 -1.0500 0.0004 0.0005 27 1 3.2278 -1.6107 1.2543 28 1 4.6562 -0.6515 -2.1021 29 1 5.7626 -1.5048 -0.9993 30 1 5.7022 -3.4939 -2.4792 31 1 4.5958 -2.6399 -3.5816 32 1 7.1333 -4.0953 -5.8187 33 1 2.8406 -0.3490 2.6711 34 1 3.6694 1.2512 4.3488 35 1 4.3663 4.1189 1.2670 36 1 3.5473 2.5135 -0.4106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491421144.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = -5.387388 kcal Electronic energy + Delta-G solvation = -22335.292289 eV Core-core repulsion = 18745.878124 eV Total energy + Delta-G solvation = -3589.414164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00653 -37.20646 -36.65935 -36.02306 -35.48452 -33.93526 -32.31052 -31.48995 -31.20344 -30.88267 -26.36166 -25.65199 -23.28444 -22.07562 -21.71316 -19.22589 -18.62589 -17.97488 -17.39953 -16.57419 -16.37731 -15.67047 -15.54141 -15.30926 -14.84221 -14.58937 -14.53764 -13.87771 -13.86267 -13.64432 -13.37476 -12.55823 -12.32334 -12.06749 -11.88193 -11.80123 -11.65394 -11.57833 -11.56678 -11.15356 -11.10642 -11.00151 -10.60429 -10.50426 -10.44102 -10.31419 -10.08988 -9.67975 -9.39998 -9.14637 -8.99338 -8.52746 -6.14888 -4.20705 0.60416 0.76051 0.93440 1.78884 2.52283 2.72995 3.20020 3.24741 3.28900 3.31192 3.33570 4.11566 4.18447 4.34951 4.36732 4.47662 4.55111 4.66860 4.77379 4.95414 5.00896 5.20472 5.27549 5.43219 5.56582 5.58726 5.73288 5.80204 5.82407 5.86043 6.15092 6.38337 6.42517 6.86970 7.26358 7.32091 7.53364 7.77910 8.14054 8.82690 9.44322 10.96134 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003395 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.502727 B = 8245.382337 C = 9833.915745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.200 4.200 3 C 0.311 3.689 4 H 0.117 0.883 5 N -1.118 6.118 6 S 2.586 3.414 7 O -0.957 6.957 8 O -0.962 6.962 9 C -0.588 4.588 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.081 4.081 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.032 4.032 23 Cl -0.072 7.072 24 C -0.107 4.107 25 C -0.090 4.090 26 H 0.219 0.781 27 H 0.414 0.586 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 13.981 16.369 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.202 4.202 3 C 0.203 3.797 4 H 0.135 0.865 5 N -0.872 5.872 6 S 2.684 3.316 7 O -0.947 6.947 8 O -0.952 6.952 9 C -0.722 4.722 10 C -0.011 4.011 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.083 4.083 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.059 4.059 23 Cl -0.043 7.043 24 C -0.125 4.125 25 C -0.109 4.109 26 H 0.236 0.764 27 H 0.249 0.751 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.901 13.144 15.993 22.534 hybrid contribution 1.132 0.856 -0.003 1.419 sum -7.769 14.000 15.990 22.629 Atomic orbital electron populations 1.24905 0.95795 0.98261 0.99679 1.22986 0.94103 1.01791 1.01273 1.16170 0.84029 0.81626 0.97860 0.86536 1.56146 1.81868 1.25862 1.23369 1.05886 0.77374 0.74304 0.74075 1.93572 1.47895 1.86021 1.67229 1.93566 1.84651 1.44200 1.72798 1.30464 1.16694 1.12642 1.12402 1.18974 0.98270 0.93883 0.89963 1.20990 1.14010 1.06699 1.14329 0.91977 1.25068 0.97519 0.94941 0.96938 1.69952 1.41070 1.15665 1.26106 0.86468 0.82460 0.79575 0.78771 1.20450 1.21003 1.19737 1.19844 0.99344 0.94833 0.94250 1.20911 0.98379 0.99687 0.91853 1.21034 0.99158 0.91867 1.00621 1.20996 1.02413 0.91953 0.90512 1.98379 1.87371 1.60924 1.57627 1.21053 1.00057 1.00669 0.90753 1.21049 0.97308 0.92227 1.00317 0.76387 0.75118 0.86300 0.85783 0.94776 0.94738 0.92495 0.84854 0.84636 0.84482 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 19.25 29.55 0.57 -1.32 16 2 C -0.20 -2.51 12.77 -37.12 -0.47 -2.98 16 3 C 0.31 3.59 2.72 -71.87 -0.20 3.39 16 4 H 0.12 1.22 7.01 -51.93 -0.36 0.86 16 5 N -1.12 -14.08 5.27 -8.32 -0.04 -14.12 16 6 S 2.59 44.69 5.38 -107.50 -0.58 44.12 16 7 O -0.96 -19.41 17.73 -57.54 -1.02 -20.43 16 8 O -0.96 -19.43 18.08 -57.54 -1.04 -20.47 16 9 C -0.59 -10.69 5.90 37.16 0.22 -10.47 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 15 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.08 -0.80 4.92 -104.62 -0.51 -1.31 16 20 C -0.09 -0.80 9.14 -39.58 -0.36 -1.17 16 21 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 22 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 23 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.12 16 24 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 25 C -0.09 -0.79 9.67 -39.59 -0.38 -1.18 16 26 H 0.22 1.63 7.80 -54.09 -0.42 1.21 16 27 H 0.41 4.30 7.06 -34.47 -0.24 4.06 16 28 H 0.12 1.86 7.44 -51.92 -0.39 1.47 16 29 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 33 H 0.13 1.01 6.83 -52.49 -0.36 0.65 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -35.34 350.22 -9.76 -45.09 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.85 Total: 2.65 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -2.72 Total: -30.46 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.69 Total: -39.51 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -2.06 Total: -40.90 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 44.69 SS G_CDS: -0.58 Total: 44.12 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.34 -9.76 -45.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491421144.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.707 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds