Wall clock time and date at job start Tue Mar 31 2020 14:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46926 * 106.29694 * 3 2 1 5 5 N 1.46499 * 109.47205 * 346.29975 * 3 2 1 6 6 S 1.65601 * 120.00334 * 94.99886 * 5 3 2 7 7 O 1.42096 * 104.27550 * 308.93049 * 6 5 3 8 8 O 1.42097 * 104.27967 * 181.06892 * 6 5 3 9 9 C 1.81399 * 104.44938 * 64.99936 * 6 5 3 10 10 C 1.53002 * 109.47162 * 180.02562 * 9 6 5 11 11 C 1.50706 * 109.46925 * 179.97438 * 10 9 6 12 12 H 1.07999 * 120.00196 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.50695 * 109.47297 * 226.29320 * 3 2 1 20 20 C 1.38245 * 119.98269 * 79.73022 * 19 3 2 21 21 C 1.38222 * 120.01038 * 179.72944 * 20 19 3 22 22 C 1.38349 * 119.98631 * 0.54245 * 21 20 19 23 23 Cl 1.73601 * 120.01264 * 179.70575 * 22 21 20 24 24 C 1.38351 * 119.97352 * 359.73066 * 22 21 20 25 25 C 1.38213 * 119.98822 * 359.97438 * 24 22 21 26 26 H 4.18738 * 15.03853 * 0.02562 * 4 2 1 27 27 H 0.97004 * 119.99597 * 274.99304 * 5 3 2 28 28 H 1.09004 * 109.47089 * 300.00001 * 9 6 5 29 29 H 1.09004 * 109.47568 * 60.00012 * 9 6 5 30 30 H 1.09000 * 109.46497 * 299.99702 * 10 9 6 31 31 H 1.08996 * 109.46876 * 60.00092 * 10 9 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99516 * 0.02562 * 20 19 3 34 34 H 1.08000 * 120.00193 * 180.27057 * 21 20 19 35 35 H 1.08002 * 120.00555 * 179.97438 * 24 22 21 36 36 H 1.08001 * 119.99512 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.2892 -0.9864 5 7 3.1349 -1.3410 0.3271 6 16 3.5292 -2.3972 -0.8858 7 8 2.3922 -2.3925 -1.7380 8 8 3.9299 -3.5786 -0.2054 9 6 4.9480 -1.6271 -1.7132 10 6 5.4105 -2.5182 -2.8678 11 6 6.5888 -1.8780 -3.5555 12 1 6.9694 -0.9302 -3.2045 13 6 7.1808 -2.5024 -4.6329 14 7 6.7170 -3.6563 -5.0606 15 14 8.6418 -1.7092 -5.4849 16 1 9.8992 -2.1703 -4.8435 17 1 8.6474 -2.0946 -6.9191 18 1 8.5400 -0.2322 -5.3697 19 6 3.1479 0.9826 1.0270 20 6 3.1771 0.6301 2.3635 21 6 3.6426 1.5283 3.3053 22 6 4.0688 2.7842 2.9117 23 17 4.6464 3.9156 4.0950 24 6 4.0340 3.1384 1.5748 25 6 3.5741 2.2373 0.6331 26 1 -1.0500 0.0004 0.0005 27 1 3.2278 -1.6107 1.2543 28 1 4.6562 -0.6515 -2.1021 29 1 5.7626 -1.5048 -0.9993 30 1 5.7022 -3.4939 -2.4792 31 1 4.5958 -2.6399 -3.5816 32 1 7.1333 -4.0953 -5.8187 33 1 2.8406 -0.3490 2.6711 34 1 3.6694 1.2512 4.3488 35 1 4.3663 4.1189 1.2670 36 1 3.5473 2.5135 -0.4106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491421144.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:54 Heat of formation + Delta-G solvation = -29.068738 kcal Electronic energy + Delta-G solvation = -22336.319189 eV Core-core repulsion = 18745.878124 eV Total energy + Delta-G solvation = -3590.441065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70003 -38.26125 -37.84747 -37.06460 -36.80918 -35.88157 -33.24314 -33.11877 -32.12857 -31.64233 -27.59232 -27.20654 -24.01296 -23.51064 -22.78054 -20.48477 -19.56183 -19.22009 -18.63840 -18.07348 -17.36271 -17.03247 -16.53887 -16.45985 -16.33204 -15.94484 -15.41109 -15.06329 -14.58742 -14.47725 -14.44922 -14.33220 -13.71986 -13.34536 -13.22016 -13.14239 -12.96314 -12.91189 -12.77391 -12.52232 -12.36492 -12.22898 -12.13126 -11.79004 -11.76140 -11.51328 -11.34885 -11.19238 -10.74179 -10.62525 -10.03331 -9.67494 -8.24107 -6.37701 -0.76775 0.02768 0.30052 1.13720 1.43248 1.44570 1.47862 1.55643 1.86398 2.14411 2.39806 2.56824 2.76706 3.09871 3.20567 3.43491 3.67659 3.71675 3.90666 3.93887 4.02349 4.16151 4.30890 4.33776 4.63680 4.67305 4.78380 4.97638 5.03346 5.15278 5.22619 5.28898 5.30465 5.46050 5.70681 5.74462 5.93780 6.08000 6.67127 6.76339 7.32583 8.88188 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.003395 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.502727 B = 8245.382337 C = 9833.915745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.237 4.237 3 C 0.304 3.696 4 H 0.126 0.874 5 N -1.100 6.100 6 S 2.614 3.386 7 O -0.989 6.989 8 O -0.994 6.994 9 C -0.586 4.586 10 C 0.020 3.980 11 C -0.536 4.536 12 H 0.078 0.922 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.256 1.256 19 C -0.089 4.089 20 C -0.096 4.096 21 C -0.111 4.111 22 C -0.041 4.041 23 Cl -0.071 7.071 24 C -0.110 4.110 25 C -0.094 4.094 26 H 0.249 0.751 27 H 0.426 0.574 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.006 0.994 31 H 0.009 0.991 32 H 0.267 0.733 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 16.202 17.223 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.239 4.239 3 C 0.198 3.802 4 H 0.143 0.857 5 N -0.859 5.859 6 S 2.711 3.289 7 O -0.979 6.979 8 O -0.985 6.985 9 C -0.718 4.718 10 C -0.019 4.019 11 C -0.575 4.575 12 H 0.097 0.903 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.179 1.179 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.068 4.068 23 Cl -0.042 7.042 24 C -0.128 4.128 25 C -0.112 4.112 26 H 0.265 0.735 27 H 0.264 0.736 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.553 15.375 16.867 24.372 hybrid contribution 0.928 0.210 -0.188 0.970 sum -7.625 15.584 16.679 24.067 Atomic orbital electron populations 1.25782 0.96826 0.96823 0.98508 1.23406 0.94932 1.03114 1.02467 1.16390 0.83988 0.80854 0.99016 0.85693 1.55607 1.81353 1.26089 1.22856 1.04743 0.76389 0.73855 0.73865 1.93529 1.49007 1.86577 1.68742 1.93515 1.84979 1.46493 1.73469 1.30339 1.18066 1.12612 1.10812 1.18830 0.97285 0.94062 0.91731 1.21523 1.14391 1.07250 1.14366 0.90339 1.26103 1.00734 0.95436 0.97967 1.70101 1.42952 1.17491 1.26915 0.85336 0.78505 0.79335 0.77222 1.19773 1.21036 1.17939 1.19760 1.00269 0.94933 0.94096 1.21073 0.98374 1.00308 0.91718 1.21219 0.98749 0.91663 1.01351 1.21179 1.02525 0.92210 0.90861 1.98379 1.87358 1.60886 1.57619 1.21264 0.99713 1.01321 0.90543 1.21265 0.96819 0.91825 1.01331 0.73500 0.73628 0.83462 0.83503 0.97575 0.97310 0.92458 0.83892 0.83209 0.82965 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 19.25 74.32 1.43 -1.90 16 2 C -0.24 -5.61 12.77 31.13 0.40 -5.21 16 3 C 0.30 6.52 2.72 42.44 0.12 6.64 16 4 H 0.13 2.39 7.01 -2.38 -0.02 2.38 16 5 N -1.10 -26.25 5.27 -180.23 -0.95 -27.20 16 6 S 2.61 89.74 5.38 -56.49 -0.30 89.43 16 7 O -0.99 -40.30 17.73 -127.65 -2.26 -42.56 16 8 O -0.99 -40.48 18.08 -127.65 -2.31 -42.78 16 9 C -0.59 -20.76 5.90 71.98 0.42 -20.34 16 10 C 0.02 1.01 4.98 29.85 0.15 1.16 16 11 C -0.54 -28.85 9.11 25.60 0.23 -28.62 16 12 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 13 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 14 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 15 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 C -0.09 -1.57 4.92 -19.86 -0.10 -1.67 16 20 C -0.10 -1.54 9.14 22.27 0.20 -1.34 16 21 C -0.11 -1.68 9.83 22.29 0.22 -1.46 16 22 C -0.04 -0.65 6.32 22.32 0.14 -0.51 16 23 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.18 16 24 C -0.11 -1.62 9.83 22.29 0.22 -1.40 16 25 C -0.09 -1.44 9.67 22.26 0.22 -1.22 16 26 H 0.25 3.07 7.80 -4.42 -0.03 3.04 16 27 H 0.43 8.22 7.06 -96.74 -0.68 7.54 16 28 H 0.15 4.32 7.44 -2.39 -0.02 4.31 16 29 H 0.15 4.51 8.14 -2.39 -0.02 4.49 16 30 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.14 1.90 6.83 -2.91 -0.02 1.88 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.16 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -76.82 350.22 0.95 -75.87 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.43 Total: 15.51 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 4.11 Total: -55.64 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -0.67 Total: -83.13 kcal Atomic # 8 Polarization: -80.78 SS G_CDS: -4.57 Total: -85.35 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 89.74 SS G_CDS: -0.30 Total: 89.43 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -76.82 0.95 -75.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491421144.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.802 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds