Wall clock time and date at job start Tue Mar 31 2020 15:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47300 * 269.99795 * 3 2 1 5 5 H 1.48500 * 109.47059 * 30.00200 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99783 * 3 2 1 7 7 C 1.37875 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00673 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47241 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46984 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99435 * 180.02562 * 12 11 10 14 14 O 1.21689 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.46435 * 119.99625 * 179.97438 * 13 12 11 16 16 C 1.34806 * 119.99648 * 173.27853 * 15 13 12 17 17 C 1.47208 * 120.00420 * 348.77483 * 16 15 13 18 18 C 1.39820 * 120.15444 * 311.84689 * 17 16 15 19 19 C 1.38018 * 119.83696 * 180.23421 * 18 17 16 20 20 Cl 1.73602 * 119.92046 * 180.02562 * 19 18 17 21 21 C 1.38488 * 120.16269 * 0.05844 * 19 18 17 22 22 C 1.38499 * 120.31552 * 359.96519 * 21 19 18 23 23 Cl 1.73598 * 119.91887 * 180.02562 * 22 21 19 24 24 C 1.38015 * 120.15830 * 359.97438 * 22 21 19 25 25 H 0.96998 * 119.99882 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46970 * 59.99531 * 9 7 2 27 27 H 1.08998 * 109.46720 * 300.00052 * 9 7 2 28 28 H 1.08996 * 109.47497 * 59.99483 * 10 9 7 29 29 H 1.09007 * 109.47102 * 299.99604 * 10 9 7 30 30 H 1.08996 * 109.47361 * 59.99322 * 11 10 9 31 31 H 1.09002 * 109.46664 * 299.99282 * 11 10 9 32 32 H 0.97001 * 120.00271 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.99819 * 353.27103 * 15 13 12 34 34 H 1.08002 * 119.99569 * 168.77157 * 16 15 13 35 35 H 1.08003 * 120.07976 * 0.25267 * 18 17 16 36 36 H 1.07995 * 119.84482 * 179.97438 * 21 19 18 37 37 H 1.07995 * 120.07811 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9829 -7.3713 -0.0004 14 8 0.7865 -7.5936 -0.0013 15 6 2.9345 -8.4843 -0.0004 16 6 2.4911 -9.7501 0.1353 17 6 1.0952 -10.0030 0.5286 18 6 0.5368 -9.3211 1.6140 19 6 -0.7711 -9.5668 1.9800 20 17 -1.4669 -8.7210 3.3270 21 6 -1.5296 -10.4869 1.2758 22 6 -0.9829 -11.1664 0.1998 23 17 -1.9433 -12.3171 -0.6761 24 6 0.3232 -10.9300 -0.1783 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 0.8538 -5.0446 -0.8902 31 1 0.8533 -5.0451 0.8897 32 1 3.3859 -5.9234 0.0008 33 1 3.9915 -8.2911 -0.1092 34 1 3.1600 -10.5788 -0.0445 35 1 1.1274 -8.6038 2.1645 36 1 -2.5524 -10.6755 1.5669 37 1 0.7484 -11.4608 -1.0172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491490747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:43 Heat of formation + Delta-G solvation = -19.709680 kcal Electronic energy + Delta-G solvation = -21679.351962 eV Core-core repulsion = 18087.273030 eV Total energy + Delta-G solvation = -3592.078932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23214 -39.01074 -36.90966 -36.55164 -35.51173 -33.94625 -33.34449 -31.35805 -30.85537 -29.94635 -26.95100 -24.55971 -23.07660 -22.87206 -21.52272 -20.70005 -19.38997 -17.85546 -16.73442 -16.48197 -16.09052 -15.87584 -15.30539 -15.16362 -14.62491 -14.50531 -14.45004 -13.87563 -13.76066 -13.54449 -12.92786 -12.48206 -12.30156 -12.16882 -12.05563 -11.85170 -11.75530 -11.39830 -11.20349 -11.08650 -10.92283 -10.75830 -10.61301 -10.11004 -9.93680 -9.89317 -9.44342 -9.14434 -8.98189 -8.69940 -8.49051 -8.38931 -6.03400 -4.06720 0.38485 0.88815 1.40167 1.65053 2.14736 3.24915 3.29476 3.33759 3.35711 3.37636 3.41510 4.23231 4.42754 4.66711 4.71262 4.80035 4.87565 4.99951 5.17353 5.29996 5.32390 5.62072 5.69843 5.74482 5.80092 5.82836 5.95303 6.11542 6.13408 6.33052 6.43712 6.56567 6.79880 6.97407 7.61452 7.66415 7.73811 7.95120 8.32285 8.36995 8.99970 9.57610 11.07898 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002316 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.091762 B =12088.097954 C =12686.390026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.718 5.718 13 C 0.526 3.474 14 O -0.532 6.532 15 C -0.189 4.189 16 C -0.041 4.041 17 C -0.033 4.033 18 C -0.035 4.035 19 C -0.027 4.027 20 Cl -0.059 7.059 21 C -0.098 4.098 22 C -0.031 4.031 23 Cl -0.066 7.066 24 C -0.092 4.092 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -26.575 2.121 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.314 3.686 14 O -0.411 6.411 15 C -0.210 4.210 16 C -0.060 4.060 17 C -0.033 4.033 18 C -0.054 4.054 19 C -0.054 4.054 20 Cl -0.030 7.030 21 C -0.117 4.117 22 C -0.058 4.058 23 Cl -0.037 7.037 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.435 -26.591 2.168 26.790 hybrid contribution 0.768 1.213 -0.095 1.439 sum 3.203 -25.378 2.073 25.663 Atomic orbital electron populations 1.69965 1.06067 1.26716 1.50490 1.25032 0.94858 0.99318 0.95262 0.86581 0.79795 0.83436 0.78104 1.20648 1.21188 1.19894 1.21196 0.92971 0.90943 1.51012 0.92661 1.19022 0.93837 0.90859 0.97646 1.21887 0.99761 0.93381 1.00841 1.21654 0.91839 0.85060 1.02051 1.46199 1.10844 1.05984 1.73702 1.18489 0.88881 0.83524 0.77720 1.90898 1.16239 1.84382 1.49558 1.23228 1.00073 0.93022 1.04695 1.22235 0.93167 0.96739 0.93881 1.18636 0.93937 0.95643 0.95125 1.21079 0.93184 0.95611 0.95484 1.20493 0.94000 0.97584 0.93333 1.98391 1.84345 1.76605 1.43669 1.20887 1.00535 0.95765 0.94520 1.20461 0.92710 0.96473 0.96112 1.98374 1.71550 1.58419 1.75369 1.21095 0.92153 0.97925 0.99867 0.92902 0.96315 0.96279 0.92730 0.92757 0.91712 0.91677 0.76760 0.84461 0.83941 0.85034 0.84197 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -9.46 5.55 -61.70 -0.34 -9.80 16 13 C 0.53 6.94 6.95 -12.96 -0.09 6.85 16 14 O -0.53 -8.83 12.48 5.20 0.06 -8.77 16 15 C -0.19 -1.66 9.93 -37.50 -0.37 -2.04 16 16 C -0.04 -0.32 9.78 -37.16 -0.36 -0.69 16 17 C -0.03 -0.34 4.33 -105.07 -0.46 -0.80 16 18 C -0.03 -0.42 6.57 -39.07 -0.26 -0.67 16 19 C -0.03 -0.33 6.31 -39.57 -0.25 -0.58 16 20 Cl -0.06 -0.72 28.95 -51.86 -1.50 -2.22 16 21 C -0.10 -1.09 9.60 -39.39 -0.38 -1.47 16 22 C -0.03 -0.33 6.31 -39.57 -0.25 -0.58 16 23 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 24 C -0.09 -0.91 9.57 -39.07 -0.37 -1.29 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.40 4.10 8.45 -40.82 -0.35 3.75 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.13 1.60 7.45 -52.48 -0.39 1.21 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -32.19 352.95 -10.25 -42.45 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.51 Total: -0.58 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -3.50 Total: -14.59 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.39 Total: -35.86 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.06 Total: -8.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -3.00 Total: -4.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.19 -10.25 -42.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491490747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.736 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds