Wall clock time and date at job start Tue Mar 31 2020 15:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47300 * 269.99795 * 3 2 1 5 5 H 1.48500 * 109.47059 * 30.00200 * 3 2 1 6 6 H 1.48502 * 109.46978 * 149.99783 * 3 2 1 7 7 C 1.37875 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00673 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47241 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46984 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99435 * 180.02562 * 12 11 10 14 14 O 1.21689 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.46435 * 119.99625 * 179.97438 * 13 12 11 16 16 C 1.34806 * 119.99648 * 173.27853 * 15 13 12 17 17 C 1.47208 * 120.00420 * 348.77483 * 16 15 13 18 18 C 1.39820 * 120.15444 * 311.84689 * 17 16 15 19 19 C 1.38018 * 119.83696 * 180.23421 * 18 17 16 20 20 Cl 1.73602 * 119.92046 * 180.02562 * 19 18 17 21 21 C 1.38488 * 120.16269 * 0.05844 * 19 18 17 22 22 C 1.38499 * 120.31552 * 359.96519 * 21 19 18 23 23 Cl 1.73598 * 119.91887 * 180.02562 * 22 21 19 24 24 C 1.38015 * 120.15830 * 359.97438 * 22 21 19 25 25 H 0.96998 * 119.99882 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46970 * 59.99531 * 9 7 2 27 27 H 1.08998 * 109.46720 * 300.00052 * 9 7 2 28 28 H 1.08996 * 109.47497 * 59.99483 * 10 9 7 29 29 H 1.09007 * 109.47102 * 299.99604 * 10 9 7 30 30 H 1.08996 * 109.47361 * 59.99322 * 11 10 9 31 31 H 1.09002 * 109.46664 * 299.99282 * 11 10 9 32 32 H 0.97001 * 120.00271 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.99819 * 353.27103 * 15 13 12 34 34 H 1.08002 * 119.99569 * 168.77157 * 16 15 13 35 35 H 1.08003 * 120.07976 * 0.25267 * 18 17 16 36 36 H 1.07995 * 119.84482 * 179.97438 * 21 19 18 37 37 H 1.07995 * 120.07811 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9829 -7.3713 -0.0004 14 8 0.7865 -7.5936 -0.0013 15 6 2.9345 -8.4843 -0.0004 16 6 2.4911 -9.7501 0.1353 17 6 1.0952 -10.0030 0.5286 18 6 0.5368 -9.3211 1.6140 19 6 -0.7711 -9.5668 1.9800 20 17 -1.4669 -8.7210 3.3270 21 6 -1.5296 -10.4869 1.2758 22 6 -0.9829 -11.1664 0.1998 23 17 -1.9433 -12.3171 -0.6761 24 6 0.3232 -10.9300 -0.1783 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8904 29 1 2.8718 -3.6044 -0.8895 30 1 0.8538 -5.0446 -0.8902 31 1 0.8533 -5.0451 0.8897 32 1 3.3859 -5.9234 0.0008 33 1 3.9915 -8.2911 -0.1092 34 1 3.1600 -10.5788 -0.0445 35 1 1.1274 -8.6038 2.1645 36 1 -2.5524 -10.6755 1.5669 37 1 0.7484 -11.4608 -1.0172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491490747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:42 Heat of formation + Delta-G solvation = -38.103771 kcal Electronic energy + Delta-G solvation = -21680.149589 eV Core-core repulsion = 18087.273030 eV Total energy + Delta-G solvation = -3592.876560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.15954 -39.95950 -37.75566 -37.46461 -36.89609 -35.19452 -34.73148 -33.06183 -31.68402 -30.85863 -28.65017 -25.81991 -24.44107 -23.73121 -22.57357 -22.30200 -20.40181 -18.77438 -18.50661 -17.59016 -17.06264 -16.81147 -16.59061 -16.48327 -16.20910 -15.55095 -15.34023 -15.06554 -14.79924 -14.44817 -14.19747 -13.74715 -13.72918 -13.50155 -13.32627 -12.98216 -12.85379 -12.75111 -12.55279 -12.37726 -12.22623 -12.01175 -11.96991 -11.67519 -11.56048 -11.23982 -10.88999 -10.73943 -10.56501 -10.05851 -9.65132 -9.33374 -8.20375 -6.32145 -0.38644 0.04609 0.62830 0.80820 1.28257 1.41078 1.42544 1.53484 2.31014 2.33765 2.43787 2.51627 3.13445 3.52069 3.89154 3.93341 3.97406 4.06967 4.19719 4.21779 4.32951 4.39782 4.55220 4.65877 4.94138 4.94345 4.97791 4.99536 5.05691 5.16341 5.22379 5.42196 5.46236 5.52741 5.57526 5.69720 5.83337 6.21237 6.67732 6.85901 7.34274 7.37828 8.91834 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002316 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.091762 B =12088.097954 C =12686.390026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.133 3.867 12 N -0.710 5.710 13 C 0.519 3.481 14 O -0.573 6.573 15 C -0.193 4.193 16 C -0.025 4.025 17 C -0.041 4.041 18 C -0.049 4.049 19 C -0.044 4.044 20 Cl -0.070 7.070 21 C -0.108 4.108 22 C -0.037 4.037 23 Cl -0.057 7.057 24 C -0.091 4.091 25 H 0.263 0.737 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.416 0.584 33 H 0.179 0.821 34 H 0.190 0.810 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -27.719 1.364 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.009 3.991 12 N -0.361 5.361 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.214 4.214 16 C -0.044 4.044 17 C -0.042 4.042 18 C -0.068 4.068 19 C -0.070 4.070 20 Cl -0.041 7.041 21 C -0.127 4.127 22 C -0.064 4.064 23 Cl -0.028 7.028 24 C -0.109 4.109 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.253 0.747 33 H 0.196 0.804 34 H 0.207 0.793 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.477 -27.755 1.412 28.326 hybrid contribution -0.241 1.488 0.128 1.513 sum 5.236 -26.267 1.540 26.828 Atomic orbital electron populations 1.70118 1.08010 1.27799 1.51729 1.26044 0.95740 1.03639 0.94785 0.85408 0.78703 0.78216 0.78488 1.19768 1.21112 1.18306 1.21688 0.93772 0.91983 1.50397 0.91438 1.18938 0.94463 0.93160 0.94855 1.21585 0.98357 0.91870 1.02096 1.21133 0.91969 0.85756 1.00257 1.45965 1.11050 1.05194 1.73938 1.19314 0.89234 0.84180 0.76349 1.90892 1.18383 1.84924 1.51228 1.23290 1.00880 0.91217 1.05972 1.22688 0.92069 0.97847 0.91783 1.19010 0.95567 0.95122 0.94473 1.21151 0.93184 0.96007 0.96455 1.20656 0.94510 0.98272 0.93609 1.98377 1.84532 1.76938 1.44268 1.21017 1.00937 0.95881 0.94906 1.20615 0.93299 0.96545 0.95982 1.98374 1.71438 1.57979 1.75041 1.21419 0.91775 0.97582 1.00174 0.92829 0.99196 0.99201 0.91360 0.91336 0.93655 0.93633 0.74717 0.80377 0.79312 0.85882 0.83540 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.23 4.97 29.84 0.15 1.38 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.13 4.60 5.67 86.38 0.49 5.09 16 12 N -0.71 -17.79 5.55 -467.33 -2.59 -20.39 16 13 C 0.52 12.99 6.95 86.38 0.60 13.59 16 14 O -0.57 -19.08 12.48 -4.31 -0.05 -19.14 16 15 C -0.19 -2.71 9.93 23.62 0.23 -2.48 16 16 C -0.02 -0.30 9.78 23.84 0.23 -0.07 16 17 C -0.04 -0.79 4.33 -20.16 -0.09 -0.88 16 18 C -0.05 -1.18 6.57 22.60 0.15 -1.03 16 19 C -0.04 -1.09 6.31 22.28 0.14 -0.95 16 20 Cl -0.07 -1.79 28.95 -2.72 -0.08 -1.87 16 21 C -0.11 -2.44 9.60 22.39 0.22 -2.22 16 22 C -0.04 -0.77 6.31 22.28 0.14 -0.62 16 23 Cl -0.06 -1.03 28.95 -2.72 -0.08 -1.11 16 24 C -0.09 -1.64 9.57 22.60 0.22 -1.42 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.42 7.45 8.45 -92.71 -0.78 6.67 16 33 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 35 H 0.12 3.06 7.45 -2.91 -0.02 3.03 16 36 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -72.64 352.95 3.15 -69.48 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.31 Total: 7.51 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 3.34 Total: -22.98 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.31 Total: -77.68 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.16 Total: -2.98 kcal Total: -72.64 3.15 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491490747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds