Wall clock time and date at job start Tue Mar 31 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.08994 * 109.46978 * 34.94813 * 3 2 1 5 5 C 1.53005 * 109.46594 * 154.94492 * 3 2 1 6 6 N 1.46492 * 109.46912 * 274.94048 * 3 2 1 7 7 C 1.46500 * 120.00606 * 300.00244 * 6 3 2 8 8 S 1.65610 * 119.99802 * 120.00601 * 6 3 2 9 9 O 1.42097 * 106.39935 * 203.53846 * 8 6 3 10 10 O 1.42102 * 106.39850 * 336.46002 * 8 6 3 11 11 C 1.76199 * 107.21476 * 89.99634 * 8 6 3 12 12 C 1.38637 * 119.75104 * 114.73097 * 11 8 6 13 13 C 1.37614 * 120.25876 * 179.76163 * 12 11 8 14 14 C 1.40735 * 119.76955 * 0.50178 * 13 12 11 15 15 C 1.41399 * 120.23742 * 179.76740 * 14 13 12 16 16 H 1.08002 * 119.99625 * 24.38099 * 15 14 13 17 17 C 1.39941 * 120.00092 * 204.38520 * 15 14 13 18 18 N 1.30821 * 120.00208 * 17.85580 * 17 15 14 19 19 Si 1.86805 * 119.99717 * 197.86392 * 17 15 14 20 20 H 1.48498 * 109.47090 * 89.99814 * 19 17 15 21 21 H 1.48511 * 109.46770 * 209.99489 * 19 17 15 22 22 H 1.48494 * 109.47123 * 329.99295 * 19 17 15 23 23 C 1.40681 * 119.52862 * 359.75198 * 14 13 12 24 24 C 1.37759 * 119.72703 * 359.97438 * 23 14 13 25 25 Cl 1.73602 * 119.88572 * 179.97438 * 24 23 14 26 26 H 4.18739 * 15.04084 * 0.02562 * 4 2 1 27 27 H 1.08998 * 109.47171 * 299.99965 * 5 3 2 28 28 H 1.08998 * 109.46738 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.47115 * 59.99711 * 5 3 2 30 30 H 1.08998 * 109.47043 * 90.00181 * 7 6 3 31 31 H 1.08996 * 109.47287 * 210.00241 * 7 6 3 32 32 H 1.09003 * 109.47004 * 330.00093 * 7 6 3 33 33 H 1.07994 * 119.87499 * 359.97438 * 12 11 8 34 34 H 1.07993 * 120.11328 * 180.23501 * 13 12 11 35 35 H 0.97004 * 120.00318 * 180.02562 * 18 17 15 36 36 H 1.07996 * 120.13669 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0098 -0.8415 -0.5887 5 6 3.1554 1.3077 -0.6109 6 7 3.1344 -0.1181 1.3760 7 6 2.7801 0.8987 2.3695 8 16 4.0872 -1.4017 1.8086 9 8 3.9396 -1.5554 3.2136 10 8 3.8077 -2.4399 0.8795 11 6 5.7610 -0.9249 1.5333 12 6 6.6273 -0.8027 2.6087 13 6 7.9379 -0.4357 2.4052 14 6 8.3956 -0.1738 1.1004 15 6 9.7390 0.2088 0.8804 16 1 10.5022 -0.0654 1.5937 17 6 10.0796 0.9426 -0.2615 18 7 9.1515 1.5711 -0.9361 19 14 11.8595 1.0247 -0.8225 20 1 12.1344 -0.0923 -1.7617 21 1 12.1032 2.3193 -1.5082 22 1 12.7557 0.9124 0.3562 23 6 7.5072 -0.2955 0.0164 24 6 6.2008 -0.6697 0.2426 25 17 5.1008 -0.8205 -1.0919 26 1 -1.0500 -0.0005 -0.0010 27 1 2.7920 1.3961 -1.6347 28 1 4.2454 1.3080 -0.6113 29 1 2.7916 2.1499 -0.0223 30 1 1.8534 0.6129 2.8671 31 1 3.5785 0.9798 3.1070 32 1 2.6447 1.8597 1.8734 33 1 6.2732 -0.9995 3.6098 34 1 8.6117 -0.3449 3.2442 35 1 9.3875 2.0795 -1.7278 36 1 7.8481 -0.0973 -0.9890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491513268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:06 Heat of formation + Delta-G solvation = -2.475441 kcal Electronic energy + Delta-G solvation = -23812.996839 eV Core-core repulsion = 20223.708946 eV Total energy + Delta-G solvation = -3589.287893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -37.93240 -37.36801 -36.57988 -35.74842 -35.15453 -34.16056 -32.59463 -30.37670 -30.02896 -29.51034 -26.31319 -26.06346 -23.03131 -21.76926 -21.37680 -18.84556 -18.06673 -17.82420 -17.46978 -16.68595 -15.82906 -15.59278 -14.69744 -14.58709 -14.33380 -14.03927 -13.77587 -13.40925 -12.84838 -12.72022 -12.67419 -12.52951 -12.30942 -12.04101 -11.70406 -11.55254 -11.49334 -11.37580 -11.25091 -11.20187 -11.15654 -10.58955 -10.55238 -10.38008 -10.31466 -10.11799 -9.89450 -9.63602 -9.56803 -8.84535 -8.16054 -7.77445 -7.31534 -4.99434 1.08083 1.99391 2.60365 2.76528 2.80770 2.83619 2.85170 2.87184 3.00454 3.54970 3.65942 4.04166 4.38413 4.48245 4.94679 5.06459 5.21028 5.40224 5.49133 5.73271 5.76745 5.84194 5.92159 5.98562 6.07192 6.32516 6.37751 6.47461 6.50690 6.61086 6.74786 6.89861 6.94803 7.12271 7.29166 7.52719 7.69880 7.71087 8.02926 8.29072 8.35639 9.58697 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020029 B = 0.004562 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.667610 B = 6136.556801 C = 6796.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.246 3.754 4 H 0.128 0.872 5 C -0.162 4.162 6 N -0.995 5.995 7 C 0.098 3.902 8 S 2.692 3.308 9 O -0.979 6.979 10 O -0.966 6.966 11 C -0.791 4.791 12 C 0.011 3.989 13 C -0.236 4.236 14 C 0.142 3.858 15 C -0.422 4.422 16 H 0.094 0.906 17 C 0.070 3.930 18 N -0.757 5.757 19 Si 0.921 3.079 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.166 4.166 24 C 0.074 3.926 25 Cl -0.099 7.099 26 H 0.216 0.784 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.293 0.707 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 2.565 -0.639 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.141 3.859 4 H 0.145 0.855 5 C -0.221 4.221 6 N -0.830 5.830 7 C -0.048 4.048 8 S 2.791 3.209 9 O -0.970 6.970 10 O -0.957 6.957 11 C -0.887 4.887 12 C -0.009 4.009 13 C -0.256 4.256 14 C 0.137 3.863 15 C -0.448 4.448 16 H 0.112 0.888 17 C -0.154 4.154 18 N -0.378 5.378 19 Si 0.743 3.257 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.187 4.187 24 C 0.046 3.954 25 Cl -0.070 7.070 26 H 0.233 0.767 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.111 1.941 -0.618 7.397 hybrid contribution 0.940 0.718 -0.645 1.347 sum -6.170 2.659 -1.263 6.836 Atomic orbital electron populations 1.24842 0.95725 1.02072 0.99906 1.23589 0.94611 0.99395 1.00369 1.18126 0.83233 1.01389 0.83174 0.85542 1.22312 1.03615 0.95767 1.00404 1.57690 1.65925 1.43222 1.16184 1.21359 1.00849 0.91717 0.90855 1.01484 0.73855 0.72808 0.72787 1.93469 1.86980 1.85303 1.31240 1.93530 1.85080 1.52743 1.64339 1.29099 1.22749 1.38636 0.98172 1.20191 0.93257 0.91984 0.95496 1.21109 0.95365 1.12729 0.96418 1.17720 0.92533 0.85585 0.90430 1.20015 0.94011 1.26145 1.04650 0.88813 1.26200 1.01064 0.92967 0.95130 1.69784 1.35995 1.18306 1.13759 0.86075 0.80536 0.79002 0.80054 1.18586 1.19686 1.18016 1.21274 0.90847 1.06007 1.00569 1.20026 0.91165 0.99248 0.85003 1.98289 1.62687 1.96265 1.49798 0.76680 0.91571 0.89619 0.92064 0.93023 0.90735 0.91124 0.86460 0.87467 0.89552 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.64 19.25 29.55 0.57 -2.07 16 2 C -0.18 -2.70 12.34 -37.12 -0.46 -3.16 16 3 C 0.25 4.02 2.09 -70.72 -0.15 3.87 16 4 H 0.13 2.24 4.39 -51.93 -0.23 2.01 16 5 C -0.16 -2.35 8.29 37.16 0.31 -2.05 16 6 N -1.00 -17.15 3.05 -117.63 -0.36 -17.51 16 7 C 0.10 1.40 9.63 59.85 0.58 1.98 16 8 S 2.69 54.78 5.14 -107.50 -0.55 54.23 16 9 O -0.98 -21.00 16.02 -57.17 -0.92 -21.92 16 10 O -0.97 -21.42 15.21 -57.17 -0.87 -22.29 16 11 C -0.79 -17.27 5.93 -39.25 -0.23 -17.50 16 12 C 0.01 0.24 9.52 -39.66 -0.38 -0.14 16 13 C -0.24 -5.24 9.80 -38.87 -0.38 -5.62 16 14 C 0.14 3.37 5.57 -106.83 -0.60 2.77 16 15 C -0.42 -9.63 9.05 -37.74 -0.34 -9.97 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.07 1.50 5.14 -17.34 -0.09 1.41 16 18 N -0.76 -16.79 10.95 55.55 0.61 -16.18 16 19 Si 0.92 15.96 29.60 -169.99 -5.03 10.93 16 20 H -0.26 -4.55 7.11 56.52 0.40 -4.14 16 21 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 22 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 23 C -0.17 -3.93 8.47 -38.84 -0.33 -4.26 16 24 C 0.07 1.64 6.29 -39.58 -0.25 1.40 16 25 Cl -0.10 -1.94 20.00 -51.86 -1.04 -2.98 16 26 H 0.22 1.84 7.80 -54.09 -0.42 1.42 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.38 6.19 -51.93 -0.32 1.06 16 29 H 0.06 0.79 6.66 -51.93 -0.35 0.45 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.05 7.79 -51.93 -0.40 0.65 16 32 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 33 H 0.12 2.30 7.31 -52.49 -0.38 1.92 16 34 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 36 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -27.49 325.93 -8.57 -36.06 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.58 Total: 8.08 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: -1.75 Total: -33.34 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.25 Total: -33.69 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.79 Total: -44.20 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.93 kcal Atomic # 16 Polarization: 54.78 SS G_CDS: -0.55 Total: 54.23 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.04 Total: -2.98 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.49 -8.57 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491513268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.585 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds