Wall clock time and date at job start Tue Mar 31 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46840 * 276.77473 * 3 2 1 5 5 C 1.36932 * 120.00147 * 273.65860 * 4 3 2 6 6 H 1.08003 * 120.00183 * 180.02562 * 5 4 3 7 7 C 1.38813 * 120.00313 * 0.02715 * 5 4 3 8 8 N 1.31618 * 119.99616 * 27.20463 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 207.20153 * 7 5 4 10 10 H 1.48499 * 109.47181 * 84.99417 * 9 7 5 11 11 H 1.48497 * 109.46842 * 204.99131 * 9 7 5 12 12 H 1.48494 * 109.47041 * 324.99119 * 9 7 5 13 13 S 1.65599 * 119.99549 * 93.66095 * 4 3 2 14 14 O 1.42102 * 104.27513 * 153.92585 * 13 4 3 15 15 O 1.42095 * 104.28040 * 26.07220 * 13 4 3 16 16 C 1.81396 * 104.44975 * 269.99582 * 13 4 3 17 17 C 1.53001 * 109.46976 * 180.02562 * 16 13 4 18 18 C 1.50709 * 109.47005 * 180.02562 * 17 16 13 19 19 C 1.38243 * 119.98542 * 270.29259 * 18 17 16 20 20 C 1.38205 * 120.01175 * 180.25092 * 19 18 17 21 21 C 1.38354 * 119.98820 * 359.47669 * 20 19 18 22 22 Cl 1.73603 * 120.01402 * 180.27111 * 21 20 19 23 23 C 1.38353 * 119.97231 * 0.24802 * 21 20 19 24 24 C 1.38213 * 119.98668 * 0.02562 * 23 21 20 25 25 H 4.40642 * 5.51361 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46494 * 156.77769 * 3 2 1 27 27 H 1.08994 * 109.47145 * 36.77861 * 3 2 1 28 28 H 0.97000 * 120.00274 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47117 * 60.00362 * 16 13 4 30 30 H 1.09004 * 109.47081 * 300.00042 * 16 13 4 31 31 H 1.08999 * 109.47680 * 59.99778 * 17 16 13 32 32 H 1.09004 * 109.46831 * 299.99683 * 17 16 13 33 33 H 1.08002 * 119.99447 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.00751 * 179.74688 * 20 19 18 35 35 H 1.08001 * 120.00639 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99573 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.1621 1.3716 5 6 3.2908 0.9340 2.1773 6 1 3.6512 0.8141 3.1883 7 6 2.9861 2.1994 1.6947 8 7 2.0892 2.3419 0.7419 9 14 3.8487 3.6999 2.3974 10 1 5.1429 3.9000 1.6972 11 1 2.9923 4.8979 2.2064 12 1 4.0967 3.4946 3.8470 13 16 3.4974 -1.6717 1.9475 14 8 4.4633 -1.4364 2.9629 15 8 3.8240 -2.4210 0.7853 16 6 1.9439 -2.2653 2.6720 17 6 2.1522 -3.6682 3.2459 18 6 0.8614 -4.1616 3.8473 19 6 0.5756 -3.9057 5.1754 20 6 -0.6056 -4.3624 5.7288 21 6 -1.5071 -5.0666 4.9505 22 17 -2.9942 -5.6345 5.6431 23 6 -1.2231 -5.3175 3.6199 24 6 -0.0389 -4.8652 3.0691 25 1 -1.0500 0.0002 0.0000 26 1 3.0089 0.9453 -0.4052 27 1 3.0098 -0.8222 -0.6153 28 1 1.8765 3.2260 0.4044 29 1 1.1731 -2.2980 1.9021 30 1 1.6331 -1.5896 3.4689 31 1 2.9229 -3.6352 4.0159 32 1 2.4632 -4.3441 2.4493 33 1 1.2771 -3.3518 5.7816 34 1 -0.8270 -4.1659 6.7674 35 1 -1.9266 -5.8668 3.0118 36 1 0.1831 -5.0613 2.0305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491633797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:40 Heat of formation + Delta-G solvation = 12.036975 kcal Electronic energy + Delta-G solvation = -22839.521268 eV Core-core repulsion = 19250.862681 eV Total energy + Delta-G solvation = -3588.658587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.46514 -36.66053 -36.39732 -35.81517 -34.62829 -33.84113 -32.14867 -31.19481 -31.13278 -29.15731 -26.68060 -24.20713 -23.65056 -22.90521 -21.00055 -18.54411 -17.95473 -17.29110 -16.85296 -16.51723 -15.78086 -15.59196 -15.02008 -14.82709 -14.57869 -13.81198 -13.66978 -13.61899 -13.56196 -13.28281 -13.11785 -12.53479 -12.27634 -11.89925 -11.69783 -11.58840 -11.33333 -11.27112 -11.02012 -10.97648 -10.85549 -10.84720 -10.75923 -10.52238 -10.31986 -9.88436 -9.53744 -9.33117 -9.11335 -8.95446 -8.56228 -8.32262 -6.68270 -3.96337 1.06636 1.22486 1.45908 2.02539 3.06594 3.13552 3.17399 3.53678 3.59418 3.95369 4.02841 4.35483 4.58803 4.67963 4.79245 4.83198 5.06644 5.12165 5.28642 5.32256 5.45297 5.48228 5.57016 5.59966 5.85807 5.87947 6.12337 6.14432 6.17940 6.26645 6.51481 6.58007 6.73008 6.75154 6.91500 7.10067 7.23335 8.10261 8.51590 8.76085 8.92867 10.25726 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.003320 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.449113 B = 8431.526820 C = 8681.179497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.116 4.116 3 C 0.223 3.777 4 N -0.796 5.796 5 C -0.243 4.243 6 H 0.123 0.877 7 C 0.027 3.973 8 N -0.820 5.820 9 Si 0.932 3.068 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.264 1.264 13 S 2.479 3.521 14 O -0.980 6.980 15 O -0.995 6.995 16 C -0.659 4.659 17 C -0.069 4.069 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.045 4.045 22 Cl -0.081 7.081 23 C -0.108 4.108 24 C -0.107 4.107 25 H 0.198 0.802 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.277 0.723 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -8.245 4.265 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.118 4.118 3 C 0.098 3.902 4 N -0.618 5.618 5 C -0.389 4.389 6 H 0.141 0.859 7 C -0.185 4.185 8 N -0.460 5.460 9 Si 0.757 3.243 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.189 1.189 13 S 2.577 3.423 14 O -0.970 6.970 15 O -0.985 6.985 16 C -0.777 4.777 17 C -0.107 4.107 18 C -0.057 4.057 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.072 4.072 22 Cl -0.052 7.052 23 C -0.127 4.127 24 C -0.125 4.125 25 H 0.215 0.785 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.459 -8.910 4.198 11.261 hybrid contribution -1.290 0.844 0.617 1.661 sum -6.749 -8.066 4.816 11.567 Atomic orbital electron populations 1.24308 0.95395 1.06629 1.02471 1.23647 0.94734 0.95294 0.98144 1.18787 0.83532 1.03711 0.84180 1.55355 1.71186 1.19638 1.15638 1.20120 1.34885 0.83692 1.00201 0.85946 1.25537 0.95776 0.99672 0.97467 1.70261 1.24799 1.24965 1.25928 0.85842 0.79392 0.79183 0.79930 1.19586 1.20770 1.18859 1.13833 0.80510 0.74087 0.73882 1.93369 1.59519 1.83743 1.60339 1.93352 1.84781 1.72377 1.47976 1.31326 1.30947 1.03264 1.12200 1.20310 0.94595 0.95273 1.00547 1.20065 0.96619 0.95438 0.93615 1.21089 0.96764 0.99592 0.95037 1.21020 0.93558 0.98005 1.00067 1.20881 0.89282 1.02697 0.94311 1.98353 1.33870 1.88158 1.84813 1.21014 0.97741 1.00676 0.93228 1.21079 0.93190 0.98021 1.00228 0.78497 0.85741 0.89931 0.91258 0.87267 0.86930 0.90120 0.90244 0.84847 0.85062 0.85080 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.12 -2.50 11.69 -37.12 -0.43 -2.93 16 3 C 0.22 4.88 5.43 -6.83 -0.04 4.85 16 4 N -0.80 -18.21 2.81 -62.77 -0.18 -18.39 16 5 C -0.24 -5.74 9.37 -15.06 -0.14 -5.88 16 6 H 0.12 2.87 7.26 -52.48 -0.38 2.49 16 7 C 0.03 0.62 4.98 -17.43 -0.09 0.53 16 8 N -0.82 -18.98 9.04 55.49 0.50 -18.48 16 9 Si 0.93 18.09 29.63 -169.99 -5.04 13.06 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 13 S 2.48 53.78 5.38 -107.50 -0.58 53.20 16 14 O -0.98 -23.62 16.81 -57.54 -0.97 -24.59 16 15 O -1.00 -23.13 16.54 -57.54 -0.95 -24.08 16 16 C -0.66 -12.00 6.16 37.16 0.23 -11.77 16 17 C -0.07 -1.08 5.35 -27.88 -0.15 -1.23 16 18 C -0.06 -0.81 5.13 -104.61 -0.54 -1.34 16 19 C -0.11 -1.40 9.70 -39.59 -0.38 -1.79 16 20 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 21 C -0.05 -0.56 6.32 -39.50 -0.25 -0.81 16 22 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.40 16 23 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 24 C -0.11 -1.40 9.70 -39.59 -0.38 -1.79 16 25 H 0.20 3.21 7.80 -54.09 -0.42 2.79 16 26 H 0.13 2.79 6.03 -51.93 -0.31 2.48 16 27 H 0.08 1.70 6.84 -51.93 -0.36 1.35 16 28 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 29 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.11 2.05 8.14 -51.92 -0.42 1.62 16 31 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 32 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -27.92 344.17 -9.89 -37.81 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.98 Total: 9.02 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.38 Total: -30.33 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.33 Total: -36.87 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -1.92 Total: -48.67 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.04 Total: 13.06 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.58 Total: 53.20 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.92 -9.89 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491633797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.843 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds