Wall clock time and date at job start Tue Mar 31 2020 14:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46840 * 276.77473 * 3 2 1 5 5 C 1.36932 * 120.00147 * 273.65860 * 4 3 2 6 6 H 1.08003 * 120.00183 * 180.02562 * 5 4 3 7 7 C 1.38813 * 120.00313 * 0.02715 * 5 4 3 8 8 N 1.31618 * 119.99616 * 27.20463 * 7 5 4 9 9 Si 1.86798 * 120.00265 * 207.20153 * 7 5 4 10 10 H 1.48499 * 109.47181 * 84.99417 * 9 7 5 11 11 H 1.48497 * 109.46842 * 204.99131 * 9 7 5 12 12 H 1.48494 * 109.47041 * 324.99119 * 9 7 5 13 13 S 1.65599 * 119.99549 * 93.66095 * 4 3 2 14 14 O 1.42102 * 104.27513 * 153.92585 * 13 4 3 15 15 O 1.42095 * 104.28040 * 26.07220 * 13 4 3 16 16 C 1.81396 * 104.44975 * 269.99582 * 13 4 3 17 17 C 1.53001 * 109.46976 * 180.02562 * 16 13 4 18 18 C 1.50709 * 109.47005 * 180.02562 * 17 16 13 19 19 C 1.38243 * 119.98542 * 270.29259 * 18 17 16 20 20 C 1.38205 * 120.01175 * 180.25092 * 19 18 17 21 21 C 1.38354 * 119.98820 * 359.47669 * 20 19 18 22 22 Cl 1.73603 * 120.01402 * 180.27111 * 21 20 19 23 23 C 1.38353 * 119.97231 * 0.24802 * 21 20 19 24 24 C 1.38213 * 119.98668 * 0.02562 * 23 21 20 25 25 H 4.40642 * 5.51361 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46494 * 156.77769 * 3 2 1 27 27 H 1.08994 * 109.47145 * 36.77861 * 3 2 1 28 28 H 0.97000 * 120.00274 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.47117 * 60.00362 * 16 13 4 30 30 H 1.09004 * 109.47081 * 300.00042 * 16 13 4 31 31 H 1.08999 * 109.47680 * 59.99778 * 17 16 13 32 32 H 1.09004 * 109.46831 * 299.99683 * 17 16 13 33 33 H 1.08002 * 119.99447 * 0.02562 * 19 18 17 34 34 H 1.07999 * 120.00751 * 179.74688 * 20 19 18 35 35 H 1.08001 * 120.00639 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99573 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.1621 1.3716 5 6 3.2908 0.9340 2.1773 6 1 3.6512 0.8141 3.1883 7 6 2.9861 2.1994 1.6947 8 7 2.0892 2.3419 0.7419 9 14 3.8487 3.6999 2.3974 10 1 5.1429 3.9000 1.6972 11 1 2.9923 4.8979 2.2064 12 1 4.0967 3.4946 3.8470 13 16 3.4974 -1.6717 1.9475 14 8 4.4633 -1.4364 2.9629 15 8 3.8240 -2.4210 0.7853 16 6 1.9439 -2.2653 2.6720 17 6 2.1522 -3.6682 3.2459 18 6 0.8614 -4.1616 3.8473 19 6 0.5756 -3.9057 5.1754 20 6 -0.6056 -4.3624 5.7288 21 6 -1.5071 -5.0666 4.9505 22 17 -2.9942 -5.6345 5.6431 23 6 -1.2231 -5.3175 3.6199 24 6 -0.0389 -4.8652 3.0691 25 1 -1.0500 0.0002 0.0000 26 1 3.0089 0.9453 -0.4052 27 1 3.0098 -0.8222 -0.6153 28 1 1.8765 3.2260 0.4044 29 1 1.1731 -2.2980 1.9021 30 1 1.6331 -1.5896 3.4689 31 1 2.9229 -3.6352 4.0159 32 1 2.4632 -4.3441 2.4493 33 1 1.2771 -3.3518 5.7816 34 1 -0.8270 -4.1659 6.7674 35 1 -1.9266 -5.8668 3.0118 36 1 0.1831 -5.0613 2.0305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491633797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:39 Heat of formation + Delta-G solvation = -2.227229 kcal Electronic energy + Delta-G solvation = -22840.139811 eV Core-core repulsion = 19250.862681 eV Total energy + Delta-G solvation = -3589.277130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.44674 -38.06618 -37.74760 -37.57990 -36.57391 -35.06796 -33.77268 -32.84607 -32.07521 -30.36667 -28.34043 -25.78054 -25.08522 -23.85563 -22.10115 -20.27154 -19.63335 -18.80032 -18.21032 -18.02613 -17.15804 -16.97392 -16.45700 -16.25852 -16.10919 -15.35507 -15.04062 -14.76587 -14.67655 -14.56332 -14.40628 -14.15412 -13.62702 -13.53823 -13.11007 -12.83113 -12.72038 -12.70384 -12.66516 -12.61293 -12.29119 -12.25854 -12.13241 -11.96432 -11.78209 -11.58709 -11.17836 -10.95465 -10.57247 -10.05766 -10.03363 -9.56760 -8.31250 -5.73422 -0.33908 0.10636 0.27847 1.10771 1.49466 1.55697 1.62168 1.89521 2.35985 2.40909 2.54901 2.69136 2.90173 3.28768 3.53700 3.73198 3.74608 3.92581 3.93909 3.99347 4.04759 4.31838 4.38294 4.50047 4.54884 4.72087 4.73637 4.97486 4.99928 5.04586 5.19343 5.20038 5.29247 5.47239 5.54216 5.58719 5.78076 6.39770 6.86304 7.16796 7.24650 8.64170 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.003320 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.449113 B = 8431.526820 C = 8681.179497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.154 4.154 3 C 0.228 3.772 4 N -0.824 5.824 5 C -0.295 4.295 6 H 0.112 0.888 7 C 0.001 3.999 8 N -0.850 5.850 9 Si 0.979 3.021 10 H -0.274 1.274 11 H -0.279 1.279 12 H -0.265 1.265 13 S 2.524 3.476 14 O -1.001 7.001 15 O -1.007 7.007 16 C -0.634 4.634 17 C -0.074 4.074 18 C -0.075 4.075 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.050 4.050 22 Cl -0.070 7.070 23 C -0.110 4.110 24 C -0.113 4.113 25 H 0.232 0.768 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.274 0.726 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -9.923 5.083 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.156 4.156 3 C 0.102 3.898 4 N -0.648 5.648 5 C -0.436 4.436 6 H 0.130 0.870 7 C -0.207 4.207 8 N -0.489 5.489 9 Si 0.803 3.197 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.189 1.189 13 S 2.624 3.376 14 O -0.992 6.992 15 O -0.997 6.997 16 C -0.759 4.759 17 C -0.112 4.112 18 C -0.076 4.076 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.077 4.077 22 Cl -0.041 7.041 23 C -0.128 4.128 24 C -0.131 4.131 25 H 0.248 0.752 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.956 -10.463 4.991 13.519 hybrid contribution -0.908 0.951 0.446 1.388 sum -7.864 -9.512 5.437 13.487 Atomic orbital electron populations 1.25112 0.96245 1.04900 1.00730 1.23790 0.95179 0.96892 0.99728 1.18582 0.84305 1.03207 0.83662 1.54593 1.74032 1.19651 1.16524 1.19936 1.39081 0.84677 0.99894 0.87027 1.25991 0.95861 1.00976 0.97838 1.70320 1.25939 1.24926 1.27718 0.85145 0.78355 0.77028 0.79163 1.19911 1.20482 1.18927 1.10538 0.80213 0.73433 0.73397 1.93375 1.60493 1.84354 1.60937 1.93367 1.85214 1.72483 1.48681 1.30919 1.26893 1.05526 1.12529 1.20379 0.96195 0.93350 1.01304 1.19949 0.96168 0.97105 0.94344 1.21274 0.97398 0.99673 0.94893 1.21242 0.93105 0.97525 1.01020 1.21080 0.89677 1.02340 0.94595 1.98360 1.33151 1.87977 1.84658 1.21249 0.97735 1.00390 0.93428 1.21273 0.93275 0.97750 1.00802 0.75173 0.87075 0.89559 0.91537 0.86373 0.86319 0.89318 0.89168 0.83951 0.83258 0.83137 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.59 19.25 74.32 1.43 -8.16 16 2 C -0.15 -6.60 11.69 31.12 0.36 -6.24 16 3 C 0.23 10.17 5.43 84.57 0.46 10.63 16 4 N -0.82 -38.29 2.81 -352.52 -0.99 -39.28 16 5 C -0.30 -14.42 9.37 84.03 0.79 -13.63 16 6 H 0.11 5.46 7.26 -2.91 -0.02 5.44 16 7 C 0.00 0.06 4.98 84.86 0.42 0.48 16 8 N -0.85 -40.53 9.04 21.65 0.20 -40.33 16 9 Si 0.98 38.18 29.63 68.60 2.03 40.21 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 S 2.52 107.84 5.38 -56.49 -0.30 107.53 16 14 O -1.00 -47.94 16.81 -127.65 -2.15 -50.09 16 15 O -1.01 -45.79 16.54 -127.65 -2.11 -47.90 16 16 C -0.63 -21.79 6.16 71.98 0.44 -21.35 16 17 C -0.07 -2.13 5.35 29.85 0.16 -1.97 16 18 C -0.07 -1.93 5.13 -19.86 -0.10 -2.04 16 19 C -0.11 -2.72 9.70 22.26 0.22 -2.50 16 20 C -0.11 -2.38 9.83 22.29 0.22 -2.16 16 21 C -0.05 -1.09 6.32 22.32 0.14 -0.95 16 22 Cl -0.07 -1.37 28.96 -2.72 -0.08 -1.45 16 23 C -0.11 -2.32 9.83 22.29 0.22 -2.10 16 24 C -0.11 -2.63 9.70 22.26 0.22 -2.42 16 25 H 0.23 6.80 7.80 -4.42 -0.03 6.76 16 26 H 0.11 5.22 6.03 -2.39 -0.01 5.21 16 27 H 0.09 3.62 6.84 -2.39 -0.02 3.61 16 28 H 0.27 12.43 8.31 -92.71 -0.77 11.66 16 29 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 30 H 0.12 4.09 8.14 -2.39 -0.02 4.08 16 31 H 0.09 2.42 8.09 -2.39 -0.02 2.40 16 32 H 0.09 2.41 8.08 -2.38 -0.02 2.39 16 33 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -59.16 344.17 2.67 -56.49 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 1.09 Total: 27.22 kcal Atomic # 6 Polarization: -57.38 SS G_CDS: 4.98 Total: -52.40 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -0.80 Total: -79.61 kcal Atomic # 8 Polarization: -93.74 SS G_CDS: -4.26 Total: -97.99 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: 107.84 SS G_CDS: -0.30 Total: 107.53 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -59.16 2.67 -56.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491633797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.268 kcal (2) G-P(sol) polarization free energy of solvation -59.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds