Wall clock time and date at job start Tue Mar 31 2020 15:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39713 * 120.01663 * 290.36405 * 3 2 1 5 5 C 1.37667 * 120.01166 * 180.23264 * 4 3 2 6 6 C 1.39685 * 120.03720 * 359.49663 * 5 4 3 7 7 C 1.47883 * 119.98635 * 180.27956 * 6 5 4 8 8 O 1.21548 * 119.99764 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00060 * 180.02562 * 7 6 5 10 10 C 1.39378 * 119.99968 * 174.95964 * 9 7 6 11 11 C 1.38621 * 119.57913 * 185.36810 * 10 9 7 12 12 C 1.40811 * 118.78802 * 179.97438 * 11 10 9 13 13 C 1.41549 * 120.99018 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99456 * 151.71354 * 13 12 11 15 15 C 1.40025 * 120.00130 * 331.71130 * 13 12 11 16 16 N 1.30739 * 120.00281 * 350.22041 * 15 13 12 17 17 Si 1.86804 * 120.00089 * 170.21712 * 15 13 12 18 18 H 1.48501 * 109.46758 * 60.00309 * 17 15 13 19 19 H 1.48499 * 109.47064 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47331 * 300.00679 * 17 15 13 21 21 C 1.41175 * 118.01207 * 359.97438 * 12 11 10 22 22 C 1.37583 * 119.01806 * 359.97438 * 21 12 11 23 23 N 1.32079 * 121.11483 * 359.74824 * 22 21 12 24 24 C 1.39580 * 120.03279 * 0.25362 * 6 5 4 25 25 C 1.37915 * 119.98334 * 359.97438 * 24 6 5 26 26 Cl 1.73598 * 120.02018 * 180.02562 * 25 24 6 27 27 H 1.08003 * 119.99469 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.98293 * 179.77944 * 5 4 3 29 29 H 0.97002 * 120.00354 * 354.95276 * 9 7 6 30 30 H 1.08001 * 120.60949 * 0.02562 * 11 10 9 31 31 H 0.97002 * 120.00067 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.49116 * 180.02562 * 21 12 11 33 33 H 1.08007 * 119.44434 * 179.97438 * 22 21 12 34 34 H 1.07992 * 120.00861 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 -0.4200 1.1341 5 6 4.6438 -0.4148 1.1357 6 6 5.3428 0.0009 0.0000 7 6 6.8216 0.0002 0.0008 8 8 7.4286 -0.3617 0.9897 9 7 7.4962 0.4018 -1.0946 10 6 8.8860 0.5014 -1.0595 11 6 9.5626 1.0210 -2.1522 12 6 10.9666 1.1146 -2.0986 13 6 11.7042 1.6371 -3.1878 14 1 12.6521 2.1246 -3.0137 15 6 11.2051 1.5219 -4.4910 16 7 10.1614 0.7709 -4.7273 17 14 12.0305 2.4414 -5.8920 18 1 13.4437 2.0003 -6.0088 19 1 11.3162 2.1537 -7.1617 20 1 11.9884 3.9005 -5.6193 21 6 11.6164 0.6717 -0.9262 22 6 10.8593 0.1714 0.1080 23 7 9.5431 0.1054 0.0206 24 6 4.6461 0.4166 -1.1358 25 6 3.2669 0.4163 -1.1370 26 17 2.3995 0.9325 -2.5493 27 1 2.7275 -0.7462 2.0110 28 1 5.1838 -0.7367 2.0139 29 1 7.0147 0.6214 -1.9075 30 1 9.0227 1.3488 -3.0283 31 1 9.8154 0.6914 -5.6301 32 1 12.6917 0.7255 -0.8420 33 1 11.3494 -0.1697 1.0080 34 1 5.1868 0.7384 -2.0135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547959245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:54 Heat of formation + Delta-G solvation = 40.384268 kcal Electronic energy + Delta-G solvation = -23005.819941 eV Core-core repulsion = 19315.239385 eV Total energy + Delta-G solvation = -3690.580557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.69202 -40.47609 -39.34018 -37.71611 -37.54367 -36.15898 -35.57777 -33.05116 -32.37788 -32.07982 -30.33744 -27.88849 -26.43229 -24.11100 -23.86021 -23.23420 -21.62186 -20.35135 -19.47206 -19.24398 -17.69771 -17.19553 -16.72800 -16.46475 -16.28553 -16.04153 -15.90928 -15.48293 -15.40736 -15.28111 -14.85577 -14.40750 -14.34654 -14.25918 -14.05384 -13.88910 -13.49834 -13.17719 -12.85726 -12.67752 -12.64339 -12.61653 -12.27247 -12.08462 -11.90716 -11.50594 -11.18973 -11.16093 -10.33277 -10.03759 -9.88625 -9.63865 -8.87752 -8.57635 -6.54944 -0.92767 -0.06824 0.75044 0.77202 1.02480 1.38767 1.42816 1.44079 1.54335 1.61129 1.97144 2.13211 2.22776 2.52398 2.63019 2.86693 3.37813 3.50311 3.75486 3.87053 3.96618 4.06128 4.23464 4.50991 4.62061 4.74641 4.83332 4.88374 4.94162 5.07967 5.11155 5.26003 5.34744 5.48695 5.62063 5.93951 6.13609 6.23432 6.44718 6.56757 6.80663 6.86609 7.17065 7.80294 8.31961 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.003033 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.598628 B = 9228.099424 C =10995.117634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.270 3.730 3 C 0.001 3.999 4 C -0.041 4.041 5 C -0.052 4.052 6 C -0.089 4.089 7 C 0.540 3.460 8 O -0.506 6.506 9 N -0.645 5.645 10 C 0.332 3.668 11 C -0.250 4.250 12 C 0.114 3.886 13 C -0.486 4.486 14 H 0.082 0.918 15 C 0.040 3.960 16 N -0.817 5.817 17 Si 0.986 3.014 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.292 4.292 22 C 0.113 3.887 23 N -0.573 5.573 24 C -0.074 4.074 25 C -0.003 4.003 26 Cl -0.048 7.048 27 H 0.186 0.814 28 H 0.162 0.838 29 H 0.422 0.578 30 H 0.127 0.873 31 H 0.291 0.709 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 -0.154 3.321 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.045 4.045 3 C -0.003 4.003 4 C -0.061 4.061 5 C -0.071 4.071 6 C -0.093 4.093 7 C 0.327 3.673 8 O -0.379 6.379 9 N -0.292 5.292 10 C 0.106 3.894 11 C -0.276 4.276 12 C 0.105 3.895 13 C -0.517 4.517 14 H 0.101 0.899 15 C -0.177 4.177 16 N -0.443 5.443 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.316 4.316 22 C -0.041 4.041 23 N -0.292 5.292 24 C -0.094 4.094 25 C -0.032 4.032 26 Cl -0.019 7.019 27 H 0.203 0.797 28 H 0.179 0.821 29 H 0.261 0.739 30 H 0.145 0.855 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.170 0.830 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.888 -0.792 4.451 15.559 hybrid contribution 1.207 0.772 -2.077 2.523 sum -13.681 -0.020 2.374 13.885 Atomic orbital electron populations 1.81281 1.12653 1.08596 1.07780 1.25394 0.92302 0.93476 0.93353 1.16003 0.84192 1.04932 0.95173 1.21429 0.92901 0.94858 0.96890 1.21466 0.93697 0.94323 0.97602 1.20011 0.91215 1.02102 0.96003 1.18770 0.87702 0.77836 0.82969 1.90860 1.69813 1.43896 1.33342 1.43313 1.04261 1.65824 1.15815 1.18339 0.83974 0.95718 0.91328 1.21594 0.95073 1.12004 0.98882 1.18014 0.91856 0.87321 0.92268 1.19816 1.06166 1.34308 0.91380 0.89947 1.26730 0.94887 0.93677 1.02398 1.69758 1.20969 1.29275 1.24325 0.85188 0.79025 0.79189 0.75963 1.18706 1.19143 1.18437 1.22146 0.99931 1.11649 0.97880 1.22236 0.88633 0.95459 0.97724 1.67333 1.10152 1.26060 1.25699 1.21216 0.91618 0.97780 0.98754 1.20747 0.92087 1.01545 0.88813 1.98432 1.76069 1.88822 1.38533 0.79693 0.82088 0.73869 0.85536 0.89786 0.86605 0.82998 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.67 18.54 19.00 0.35 -9.32 16 2 C 0.27 4.92 14.36 88.33 1.27 6.19 16 3 C 0.00 0.02 5.74 -21.30 -0.12 -0.10 16 4 C -0.04 -0.47 9.73 22.49 0.22 -0.25 16 5 C -0.05 -0.86 9.57 22.48 0.22 -0.64 16 6 C -0.09 -1.94 5.88 -20.05 -0.12 -2.06 16 7 C 0.54 17.76 7.73 86.80 0.67 18.43 16 8 O -0.51 -20.64 14.58 -3.87 -0.06 -20.70 16 9 N -0.64 -22.79 5.33 -311.25 -1.66 -24.45 16 10 C 0.33 15.17 7.41 132.79 0.98 16.16 16 11 C -0.25 -12.18 8.59 22.99 0.20 -11.98 16 12 C 0.11 5.81 5.58 -21.11 -0.12 5.70 16 13 C -0.49 -24.26 9.13 23.52 0.21 -24.04 16 14 H 0.08 3.94 7.87 -2.91 -0.02 3.92 16 15 C 0.04 1.82 5.30 85.29 0.45 2.27 16 16 N -0.82 -38.51 10.83 21.84 0.24 -38.28 16 17 Si 0.99 34.94 29.57 68.60 2.03 36.97 16 18 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 19 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 C -0.29 -13.84 9.90 22.84 0.23 -13.61 16 22 C 0.11 5.15 11.15 84.50 0.94 6.09 16 23 N -0.57 -27.58 7.85 -193.58 -1.52 -29.10 16 24 C -0.07 -1.35 9.30 22.52 0.21 -1.14 16 25 C 0.00 -0.04 6.34 22.57 0.14 0.10 16 26 Cl -0.05 -0.86 28.01 -2.72 -0.08 -0.94 16 27 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 28 H 0.16 2.59 7.64 -2.91 -0.02 2.57 16 29 H 0.42 11.92 6.73 -92.71 -0.62 11.30 16 30 H 0.13 6.11 6.27 -2.91 -0.02 6.09 16 31 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16 32 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 34 H 0.16 2.52 6.39 -2.91 -0.02 2.50 16 Total: -1.00 -65.35 329.09 5.27 -60.08 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.58 Total: 24.61 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 5.39 Total: 1.12 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -2.59 Total: -101.14 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -65.35 5.27 -60.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547959245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.468 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds