Wall clock time and date at job start Tue Mar 31 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39768 * 125.83976 * 2 1 4 4 C 1.36166 * 107.81372 * 180.16508 * 3 2 1 5 5 N 1.39210 * 126.22112 * 179.85187 * 4 3 2 6 6 S 1.65599 * 120.00154 * 351.89117 * 5 4 3 7 7 O 1.42100 * 106.40246 * 182.72216 * 6 5 4 8 8 O 1.42096 * 106.39752 * 49.80677 * 6 5 4 9 9 C 1.76198 * 107.21952 * 296.26495 * 6 5 4 10 10 C 1.38426 * 122.53984 * 275.98930 * 9 6 5 11 11 C 1.33388 * 114.91925 * 179.97438 * 10 9 6 12 12 S 1.75886 * 109.59553 * 359.75468 * 11 10 9 13 13 C 1.33387 * 122.53699 * 95.96118 * 9 6 5 14 14 N 1.35254 * 107.56094 * 359.58676 * 4 3 2 15 15 C 1.46494 * 126.04943 * 180.26059 * 14 4 3 16 16 C 1.50703 * 109.47195 * 89.99749 * 15 14 4 17 17 H 1.08005 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00201 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99812 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47398 * 89.99360 * 20 18 16 22 22 H 1.48500 * 109.46982 * 210.00116 * 20 18 16 23 23 H 1.48505 * 109.47044 * 329.99499 * 20 18 16 24 24 N 1.30840 * 125.83508 * 179.70319 * 2 1 3 25 25 H 1.08994 * 109.47286 * 270.27832 * 1 2 3 26 26 H 1.09002 * 109.46810 * 30.27504 * 1 2 3 27 27 H 1.08993 * 109.47036 * 150.26873 * 1 2 3 28 28 H 1.08001 * 126.09322 * 0.02562 * 3 2 1 29 29 H 0.97003 * 119.99667 * 171.89914 * 5 4 3 30 30 H 1.08001 * 122.53986 * 359.95373 * 10 9 6 31 31 H 1.07998 * 125.20023 * 180.02562 * 11 10 9 32 32 H 1.07996 * 125.20581 * 0.02562 * 13 9 6 33 33 H 1.08995 * 109.47867 * 210.00126 * 15 14 4 34 34 H 1.09007 * 109.46706 * 330.00632 * 15 14 4 35 35 H 0.97007 * 120.00054 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6203 0.7117 -0.0037 5 7 4.7500 1.5251 -0.0079 6 16 4.5918 3.1609 -0.2110 7 8 5.9097 3.6919 -0.2326 8 8 3.5979 3.5854 0.7117 9 6 3.9227 3.4246 -1.8195 10 6 4.7112 3.4651 -2.9565 11 6 4.0466 3.6731 -4.0942 12 16 2.3277 3.8247 -3.7540 13 6 2.6178 3.5997 -2.0338 14 7 3.6093 -0.6408 0.0033 15 6 4.7867 -1.5124 0.0078 16 6 5.1905 -1.8039 1.4302 17 1 4.6262 -1.3823 2.2489 18 6 6.2803 -2.6087 1.6863 19 7 6.6323 -2.8634 2.9276 20 14 7.2567 -3.3372 0.2703 21 1 8.3479 -2.4046 -0.1102 22 1 7.8399 -4.6373 0.6884 23 1 6.3585 -3.5490 -0.8931 24 7 2.2731 -1.0607 0.0055 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8923 -0.5096 28 1 1.9905 2.1598 0.0004 29 1 5.6299 1.1335 0.1080 30 1 5.7832 3.3382 -2.9247 31 1 4.4950 3.7344 -5.0748 32 1 1.8556 3.5991 -1.2688 33 1 4.5493 -2.4466 -0.5011 34 1 5.6083 -1.0159 -0.5086 35 1 7.3993 -3.4293 3.1079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552017557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:40 Heat of formation + Delta-G solvation = 44.719359 kcal Electronic energy + Delta-G solvation = -23522.346168 eV Core-core repulsion = 19969.441253 eV Total energy + Delta-G solvation = -3552.904915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78405 -38.04868 -37.34126 -35.96527 -35.18811 -33.88726 -32.22081 -30.09734 -29.58002 -28.15673 -26.40629 -24.91050 -22.61981 -21.10160 -20.68967 -19.90525 -18.66305 -18.54132 -17.23451 -17.20375 -16.90228 -16.82185 -15.22059 -14.89775 -14.82469 -14.43127 -14.13570 -13.61686 -13.50151 -13.16166 -12.95201 -12.84840 -12.80802 -12.61756 -12.29753 -12.20376 -12.10617 -11.99390 -11.83804 -11.72664 -11.52688 -11.03554 -10.86939 -10.76170 -10.30974 -9.96255 -9.76580 -9.44382 -8.99768 -8.86872 -8.16119 -7.78770 -6.33980 -4.39013 0.08403 0.48757 1.30677 1.58368 1.94526 2.45989 2.79136 3.07582 3.15696 3.16869 3.21085 3.42397 3.64465 4.13728 4.26989 4.63036 4.84838 4.89951 4.95763 5.10994 5.16266 5.50149 5.64044 5.73504 5.88631 5.89895 5.93356 5.95753 6.12866 6.22747 6.33807 6.66730 6.78999 7.17000 7.22194 7.65562 8.20334 8.38660 8.71791 9.20000 10.78172 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004709 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.003570 B = 5944.283946 C = 6611.512937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.074 3.926 3 C -0.335 4.335 4 C 0.336 3.664 5 N -1.026 6.026 6 S 2.719 3.281 7 O -0.944 6.944 8 O -0.936 6.936 9 C -0.685 4.685 10 C -0.070 4.070 11 C -0.223 4.223 12 S 0.147 5.853 13 C -0.075 4.075 14 N -0.332 5.332 15 C 0.227 3.773 16 C -0.549 4.549 17 H 0.084 0.916 18 C 0.081 3.919 19 N -0.881 5.881 20 Si 0.870 3.130 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 N -0.281 5.281 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.434 0.566 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.188 0.812 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 13.329 -14.471 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C -0.369 4.369 4 C 0.110 3.890 5 N -0.778 5.778 6 S 2.805 3.195 7 O -0.934 6.934 8 O -0.926 6.926 9 C -0.786 4.786 10 C -0.099 4.099 11 C -0.359 4.359 12 S 0.410 5.590 13 C -0.214 4.214 14 N -0.116 5.116 15 C 0.108 3.892 16 C -0.587 4.587 17 H 0.102 0.898 18 C -0.124 4.124 19 N -0.517 5.517 20 Si 0.696 3.304 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.188 1.188 24 N -0.106 5.106 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.272 0.728 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.205 0.795 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.610 12.820 -14.688 21.313 hybrid contribution 2.300 -0.321 -0.303 2.342 sum -6.310 12.499 -14.991 20.513 Atomic orbital electron populations 1.20080 0.87166 1.02516 1.02701 1.21842 0.96508 0.90242 1.00579 1.20768 0.89014 1.00408 1.26715 1.17439 0.86683 0.84085 1.00805 1.52964 1.13688 1.26323 1.84821 1.01495 0.73589 0.70910 0.73473 1.93617 1.37257 1.75407 1.87133 1.93614 1.60892 1.79069 1.58984 1.29896 1.02858 1.21732 1.24090 1.19709 1.01183 0.99410 0.89593 1.25739 0.96160 1.11103 1.02868 1.84280 1.06999 1.67225 1.00514 1.25928 0.98365 0.96480 1.00654 1.48940 1.06341 1.02120 1.54213 1.20022 0.79240 0.89977 0.99953 1.21184 1.14451 1.32829 0.90224 0.89833 1.24812 0.96569 0.95213 0.95794 1.69867 1.26738 1.36603 1.18521 0.86944 0.80898 0.79798 0.82778 1.19530 1.20297 1.18782 1.77407 0.85687 1.21661 1.25816 0.90761 0.91049 0.91232 0.83331 0.72773 0.82845 0.81079 0.79492 0.92539 0.94321 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.44 36.01 0.38 -0.45 16 2 C 0.07 1.31 7.21 -82.44 -0.59 0.72 16 3 C -0.34 -5.85 8.90 -39.75 -0.35 -6.20 16 4 C 0.34 6.44 7.56 -153.40 -1.16 5.28 16 5 N -1.03 -17.12 5.86 31.11 0.18 -16.94 16 6 S 2.72 40.33 5.40 -107.50 -0.58 39.75 16 7 O -0.94 -15.41 17.77 -57.17 -1.02 -16.42 16 8 O -0.94 -15.52 15.43 -57.17 -0.88 -16.40 16 9 C -0.69 -8.47 5.62 -41.21 -0.23 -8.70 16 10 C -0.07 -0.78 9.76 -41.21 -0.40 -1.18 16 11 C -0.22 -2.05 11.23 29.04 0.33 -1.73 16 12 S 0.15 1.29 23.34 -107.50 -2.51 -1.22 16 13 C -0.08 -0.81 9.58 29.04 0.28 -0.53 16 14 N -0.33 -7.27 3.60 -61.64 -0.22 -7.49 16 15 C 0.23 5.24 5.04 -5.20 -0.03 5.21 16 16 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 16 17 H 0.08 2.59 8.06 -52.48 -0.42 2.16 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 19 N -0.88 -25.73 13.96 55.43 0.77 -24.95 16 20 Si 0.87 19.59 27.47 -169.99 -4.67 14.92 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 24 N -0.28 -6.01 12.56 33.65 0.42 -5.59 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.15 2.20 4.46 -52.49 -0.23 1.97 16 29 H 0.43 6.97 8.19 -34.47 -0.28 6.68 16 30 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.19 1.74 6.50 -52.49 -0.34 1.39 16 33 H 0.06 1.31 7.20 -51.93 -0.37 0.94 16 34 H 0.04 0.80 7.03 -51.93 -0.37 0.44 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -34.20 327.20 -9.10 -43.30 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.30 Total: 6.88 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -2.23 Total: -20.76 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 1.16 Total: -54.97 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.90 Total: -32.82 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.92 kcal Atomic # 16 Polarization: 41.62 SS G_CDS: -3.09 Total: 38.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.20 -9.10 -43.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552017557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds