Wall clock time and date at job start Tue Mar 31 2020 14:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39768 * 125.83976 * 2 1 4 4 C 1.36166 * 107.81372 * 180.16508 * 3 2 1 5 5 N 1.39210 * 126.22112 * 179.85187 * 4 3 2 6 6 S 1.65599 * 120.00154 * 351.89117 * 5 4 3 7 7 O 1.42100 * 106.40246 * 182.72216 * 6 5 4 8 8 O 1.42096 * 106.39752 * 49.80677 * 6 5 4 9 9 C 1.76198 * 107.21952 * 296.26495 * 6 5 4 10 10 C 1.38426 * 122.53984 * 275.98930 * 9 6 5 11 11 C 1.33388 * 114.91925 * 179.97438 * 10 9 6 12 12 S 1.75886 * 109.59553 * 359.75468 * 11 10 9 13 13 C 1.33387 * 122.53699 * 95.96118 * 9 6 5 14 14 N 1.35254 * 107.56094 * 359.58676 * 4 3 2 15 15 C 1.46494 * 126.04943 * 180.26059 * 14 4 3 16 16 C 1.50703 * 109.47195 * 89.99749 * 15 14 4 17 17 H 1.08005 * 119.99772 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00201 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99812 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47398 * 89.99360 * 20 18 16 22 22 H 1.48500 * 109.46982 * 210.00116 * 20 18 16 23 23 H 1.48505 * 109.47044 * 329.99499 * 20 18 16 24 24 N 1.30840 * 125.83508 * 179.70319 * 2 1 3 25 25 H 1.08994 * 109.47286 * 270.27832 * 1 2 3 26 26 H 1.09002 * 109.46810 * 30.27504 * 1 2 3 27 27 H 1.08993 * 109.47036 * 150.26873 * 1 2 3 28 28 H 1.08001 * 126.09322 * 0.02562 * 3 2 1 29 29 H 0.97003 * 119.99667 * 171.89914 * 5 4 3 30 30 H 1.08001 * 122.53986 * 359.95373 * 10 9 6 31 31 H 1.07998 * 125.20023 * 180.02562 * 11 10 9 32 32 H 1.07996 * 125.20581 * 0.02562 * 13 9 6 33 33 H 1.08995 * 109.47867 * 210.00126 * 15 14 4 34 34 H 1.09007 * 109.46706 * 330.00632 * 15 14 4 35 35 H 0.97007 * 120.00054 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3254 1.1330 0.0000 4 6 3.6203 0.7117 -0.0037 5 7 4.7500 1.5251 -0.0079 6 16 4.5918 3.1609 -0.2110 7 8 5.9097 3.6919 -0.2326 8 8 3.5979 3.5854 0.7117 9 6 3.9227 3.4246 -1.8195 10 6 4.7112 3.4651 -2.9565 11 6 4.0466 3.6731 -4.0942 12 16 2.3277 3.8247 -3.7540 13 6 2.6178 3.5997 -2.0338 14 7 3.6093 -0.6408 0.0033 15 6 4.7867 -1.5124 0.0078 16 6 5.1905 -1.8039 1.4302 17 1 4.6262 -1.3823 2.2489 18 6 6.2803 -2.6087 1.6863 19 7 6.6323 -2.8634 2.9276 20 14 7.2567 -3.3372 0.2703 21 1 8.3479 -2.4046 -0.1102 22 1 7.8399 -4.6373 0.6884 23 1 6.3585 -3.5490 -0.8931 24 7 2.2731 -1.0607 0.0055 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5181 27 1 -0.3633 -0.8923 -0.5096 28 1 1.9905 2.1598 0.0004 29 1 5.6299 1.1335 0.1080 30 1 5.7832 3.3382 -2.9247 31 1 4.4950 3.7344 -5.0748 32 1 1.8556 3.5991 -1.2688 33 1 4.5493 -2.4466 -0.5011 34 1 5.6083 -1.0159 -0.5086 35 1 7.3993 -3.4293 3.1079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552017557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:39 Heat of formation + Delta-G solvation = 19.422062 kcal Electronic energy + Delta-G solvation = -23523.443141 eV Core-core repulsion = 19969.441253 eV Total energy + Delta-G solvation = -3554.001888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24937 -38.85910 -38.58714 -37.21248 -36.56507 -35.69837 -34.00181 -31.09344 -30.89194 -29.59186 -28.00310 -25.74762 -24.41006 -22.44129 -21.81162 -21.19325 -19.86762 -19.37940 -19.27615 -18.54711 -18.26928 -17.78934 -16.69369 -16.39124 -16.22025 -15.79793 -15.27146 -15.00519 -14.53439 -14.36313 -14.28026 -14.08132 -13.93483 -13.73411 -13.64444 -13.52513 -13.43383 -13.27133 -13.16385 -13.02682 -12.70728 -12.58984 -12.42351 -12.00061 -11.85289 -11.71475 -11.39462 -10.93397 -10.22718 -9.72755 -9.70769 -9.23739 -8.44054 -6.56416 -1.04716 -0.33737 0.54845 0.82034 0.98048 1.09105 1.31355 1.33208 1.43344 1.53587 1.84445 1.98751 2.22824 2.50170 2.87593 3.15289 3.59544 3.72245 3.86421 4.13155 4.35439 4.39533 4.47136 4.53340 4.66607 4.74459 4.83930 4.95509 4.98962 5.13501 5.16491 5.16810 5.22768 5.45870 5.85696 5.93440 6.28367 6.48638 6.91782 7.08172 8.72454 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.004709 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.003570 B = 5944.283946 C = 6611.512937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.080 3.920 3 C -0.335 4.335 4 C 0.329 3.671 5 N -1.030 6.030 6 S 2.728 3.272 7 O -0.964 6.964 8 O -0.959 6.959 9 C -0.692 4.692 10 C -0.097 4.097 11 C -0.220 4.220 12 S 0.209 5.791 13 C -0.093 4.093 14 N -0.361 5.361 15 C 0.235 3.765 16 C -0.556 4.556 17 H 0.026 0.974 18 C 0.023 3.977 19 N -0.934 5.934 20 Si 0.947 3.053 21 H -0.250 1.250 22 H -0.277 1.277 23 H -0.242 1.242 24 N -0.328 5.328 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.175 0.825 29 H 0.433 0.567 30 H 0.158 0.842 31 H 0.201 0.799 32 H 0.199 0.801 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 14.304 -17.899 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.368 4.368 4 C 0.104 3.896 5 N -0.780 5.780 6 S 2.819 3.181 7 O -0.955 6.955 8 O -0.949 6.949 9 C -0.797 4.797 10 C -0.125 4.125 11 C -0.356 4.356 12 S 0.472 5.528 13 C -0.233 4.233 14 N -0.145 5.145 15 C 0.115 3.885 16 C -0.595 4.595 17 H 0.044 0.956 18 C -0.177 4.177 19 N -0.572 5.572 20 Si 0.767 3.233 21 H -0.174 1.174 22 H -0.203 1.203 23 H -0.166 1.166 24 N -0.152 5.152 25 H 0.101 0.899 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.192 0.808 29 H 0.271 0.729 30 H 0.175 0.825 31 H 0.218 0.782 32 H 0.216 0.784 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.602 13.816 -18.084 24.701 hybrid contribution 2.432 -0.483 0.746 2.590 sum -7.170 13.333 -17.338 23.017 Atomic orbital electron populations 1.20331 0.83465 1.04755 1.03946 1.22739 0.98698 0.89347 0.97771 1.21164 0.88297 1.01562 1.25762 1.17829 0.88016 0.83494 1.00281 1.53115 1.13176 1.26596 1.85098 1.00926 0.72969 0.70009 0.74225 1.93584 1.38534 1.75443 1.87919 1.93571 1.61173 1.79185 1.60986 1.29393 1.03746 1.24185 1.22390 1.19852 1.01714 1.01031 0.89857 1.26173 0.96771 1.09075 1.03540 1.84129 1.05917 1.65077 0.97689 1.26247 0.98070 0.96020 1.02941 1.48803 1.06261 1.02886 1.56530 1.19766 0.80804 0.90855 0.97067 1.21277 1.14161 1.32825 0.91192 0.95587 1.25838 0.97622 0.95314 0.98967 1.70034 1.27817 1.37892 1.21472 0.85741 0.79550 0.78869 0.79110 1.17443 1.20252 1.16577 1.77353 0.85892 1.23710 1.28257 0.89862 0.87446 0.90395 0.80823 0.72924 0.82463 0.78247 0.78398 0.92573 0.91702 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.44 71.24 0.74 -0.76 16 2 C 0.08 2.77 7.21 43.08 0.31 3.08 16 3 C -0.33 -11.35 8.90 22.16 0.20 -11.15 16 4 C 0.33 12.70 7.56 131.42 0.99 13.69 16 5 N -1.03 -34.90 5.86 -55.50 -0.33 -35.22 16 6 S 2.73 80.98 5.40 -56.49 -0.30 80.67 16 7 O -0.96 -31.88 17.77 -128.00 -2.28 -34.16 16 8 O -0.96 -31.79 15.43 -128.00 -1.97 -33.77 16 9 C -0.69 -16.10 5.62 21.22 0.12 -15.98 16 10 C -0.10 -1.95 9.76 21.22 0.21 -1.74 16 11 C -0.22 -3.31 11.23 66.72 0.75 -2.56 16 12 S 0.21 2.88 23.34 -56.49 -1.32 1.57 16 13 C -0.09 -1.78 9.58 66.72 0.64 -1.14 16 14 N -0.36 -16.02 3.60 -348.91 -1.26 -17.28 16 15 C 0.24 10.96 5.04 85.64 0.43 11.39 16 16 C -0.56 -31.63 9.94 25.60 0.25 -31.37 16 17 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 18 C 0.02 1.28 5.47 84.65 0.46 1.74 16 19 N -0.93 -56.70 13.96 21.45 0.30 -56.40 16 20 Si 0.95 40.28 27.47 68.60 1.88 42.17 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 24 N -0.33 -14.12 12.56 -47.44 -0.60 -14.72 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.17 4.84 4.46 -2.91 -0.01 4.83 16 29 H 0.43 14.36 8.19 -96.74 -0.79 13.57 16 30 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.20 3.16 6.50 -2.91 -0.02 3.14 16 33 H 0.06 2.59 7.20 -2.39 -0.02 2.57 16 34 H 0.07 2.65 7.03 -2.38 -0.02 2.63 16 35 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -77.82 327.20 -0.45 -78.27 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.31 Total: 23.67 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 5.11 Total: -34.81 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -1.88 Total: -123.62 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -4.25 Total: -67.93 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.17 kcal Atomic # 16 Polarization: 83.86 SS G_CDS: -1.62 Total: 82.24 kcal Total: -77.82 -0.45 -78.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552017557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.696 kcal (2) G-P(sol) polarization free energy of solvation -77.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds